Kif1c (kinesin family member 1C) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Kif1c (kinesin family member 1C) Heterocephalus glaber
Analyze
Symbol: Kif1c
Name: kinesin family member 1C
RGD ID: 18902686
Description: ENCODES a protein that exhibits ATP binding (inferred); cytoskeletal motor activity (inferred); microtubule binding (inferred); INVOLVED IN anterograde neuronal dense core vesicle transport (ortholog); retrograde neuronal dense core vesicle transport (ortholog); retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); congenital myasthenic syndrome 4A (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Kinesin-like protein KIF1C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,845,033 - 8,869,577 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,845,352 - 8,868,681 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Kif1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,845,033 - 8,869,577 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,845,352 - 8,868,681 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KIF1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,997,950 - 5,028,401 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,997,950 - 5,028,401 (+)EnsemblGRCh38hg38GRCh38
GRCh37174,901,245 - 4,931,696 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,841,998 - 4,868,720 (+)NCBINCBI36Build 36hg18NCBI36
Build 34174,841,999 - 4,868,720NCBI
Celera174,916,054 - 4,946,508 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,789,123 - 4,819,525 (+)NCBIHuRef
CHM1_1174,910,557 - 4,941,008 (+)NCBICHM1_1
T2T-CHM13v2.0174,888,274 - 4,918,727 (+)NCBIT2T-CHM13v2.0
Kif1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,591,170 - 70,622,796 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,591,374 - 70,622,790 (+)EnsemblGRCm39 Ensembl
GRCm381170,700,396 - 70,731,970 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,700,548 - 70,731,964 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,514,050 - 70,545,472 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,518,995 - 70,545,074 (+)NCBIMGSCv36mm8
Celera1178,251,472 - 78,282,892 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1143.21NCBI
Kif1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,913,010 - 55,942,220 (+)NCBIGRCr8
mRatBN7.21055,414,412 - 55,444,587 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,415,900 - 55,443,545 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1060,094,995 - 60,124,344 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,583,507 - 59,612,860 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,082,608 - 55,111,959 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,322,259 - 57,352,395 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,322,331 - 57,351,353 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01057,067,764 - 57,097,528 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,580,646 - 57,622,517 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,594,268 - 57,636,139 (+)NCBI
Celera1054,559,969 - 54,589,678 (+)NCBICelera
Cytogenetic Map10q24NCBI
Kif1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,399,768 - 10,422,712 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,399,768 - 10,423,249 (+)NCBIChiLan1.0ChiLan1.0
KIF1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,608,356 - 12,635,096 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,576,729 - 14,603,468 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0175,046,488 - 5,073,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,035,014 - 5,061,957 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,035,014 - 5,061,957 (+)Ensemblpanpan1.1panPan2
KIF1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,613,335 - 31,635,313 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,613,398 - 31,633,736 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,751,844 - 31,773,973 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,717,236 - 31,739,368 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,717,299 - 31,737,640 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,683,805 - 31,705,933 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,643,532 - 31,665,655 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,819,860 - 31,841,999 (-)NCBIUU_Cfam_GSD_1.0
Kif1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,180,016 - 53,204,590 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,696,209 - 2,720,959 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,696,385 - 2,720,959 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,897,494 - 51,924,432 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,899,762 - 51,924,465 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21253,968,351 - 53,993,120 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIF1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,478,315 - 4,502,261 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605917,129,946 - 17,155,908 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000018710   ⟹   ENSHGLP00000018526
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247868,845,033 - 8,869,577 (+)Ensembl
RefSeq Acc Id: XM_004857324   ⟹   XP_004857381
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247868,845,393 - 8,868,681 (+)NCBI
RefSeq Acc Id: XM_004857325   ⟹   XP_004857382
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247868,845,352 - 8,868,681 (+)NCBI
RefSeq Acc Id: XM_021238088   ⟹   XP_021093747
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247868,845,407 - 8,868,681 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004857381 (Get FASTA)   NCBI Sequence Viewer  
  XP_004857382 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093747 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB13549 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018526
GenBank Protein JAO02492 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004857382   ⟸   XM_004857325
- UniProtKB: A0A0P6JY08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004857381   ⟸   XM_004857324
- UniProtKB: A0A0P6JY08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093747   ⟸   XM_021238088
- UniProtKB: A0A0P6JY08 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000018526   ⟸   ENSHGLT00000018710


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013258 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000018710 ENTREZGENE
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
  6.10.250.2520 UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
NCBI Gene Kif1c ENTREZGENE
PANTHER KINESIN-LIKE PROTEIN KIF1C ISOFORM X1 UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 9 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
  Kinesin UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/TrEMBL
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_1 UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/TrEMBL
SMART KISc UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A0P6JY08 ENTREZGENE, UniProtKB/TrEMBL