Cacnb4 (calcium channel, voltage-dependent, beta 4 subunit) - Rat Genome Database

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Gene: Cacnb4 (calcium channel, voltage-dependent, beta 4 subunit) Mus musculus
Analyze
Symbol: Cacnb4
Name: calcium channel, voltage-dependent, beta 4 subunit
RGD ID: 68559
MGI Page MGI
Description: Enables voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels. Involved in regulation of synaptic vesicle exocytosis. Acts upstream of or within several processes, including adult walking behavior; cellular response to leukemia inhibitory factor; and hematopoietic or lymphoid organ development. Part of voltage-gated calcium channel complex. Is active in glutamatergic synapse. Is expressed in brain; heart; and urinary system. Human ortholog(s) of this gene implicated in dilated cardiomyopathy; episodic ataxia; episodic ataxia type 5; and idiopathic generalized epilepsy 9. Orthologous to human CACNB4 (calcium voltage-gated channel auxiliary subunit beta 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3110038O15Rik; CAB4; calcium channel voltage-dependent subunit beta 4; Cchb4; lethargic; lh; MGC31529; voltage-dependent L-type calcium channel subunit beta-4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39252,318,332 - 52,566,816 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl252,318,337 - 52,566,843 (-)EnsemblGRCm39 Ensembl
GRCm38252,428,320 - 52,676,609 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl252,428,320 - 52,676,831 (-)EnsemblGRCm38mm10GRCm38
MGSCv37252,283,840 - 52,532,101 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36252,250,329 - 52,498,591 (-)NCBIMGSCv36mm8
Celera254,158,343 - 54,407,154 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map229.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal behavior  (IEA)
abnormal brain wave pattern  (IAGP)
abnormal CD4-positive, alpha-beta T cell physiology  (IAGP)
abnormal CNS synaptic transmission  (IAGP)
abnormal eye electrophysiology  (IAGP)
abnormal fear/anxiety-related behavior  (IEA)
abnormal gait  (IEA)
abnormal head movements  (IEA)
abnormal interleukin secretion  (IAGP)
abnormal locomotor activation  (IEA)
abnormal locomotor behavior  (IEA)
abnormal lymph node morphology  (IAGP)
abnormal motor capabilities/coordination/movement  (IAGP)
abnormal motor neuron morphology  (IAGP)
abnormal nerve conduction  (IAGP)
abnormal neuromuscular synapse morphology  (IAGP)
abnormal Peyer's patch germinal center morphology  (IAGP)
abnormal posture  (IAGP)
abnormal thymus involution  (IAGP)
absent corpus luteum  (IEA)
absent thymus corticomedullary boundary  (IAGP)
ataxia  (IAGP)
cachexia  (IAGP)
circling  (IAGP)
clonic seizures  (IAGP)
convulsive seizures  (IEA)
decreased body size  (IEA)
decreased double-positive T cell number  (IAGP)
decreased interferon-gamma secretion  (IAGP)
decreased interleukin-2 secretion  (IAGP)
decreased locomotor activity  (IAGP)
decreased lymphocyte cell number  (IAGP)
decreased nerve conduction velocity  (IAGP)
decreased Peyer's patch number  (IAGP)
diarrhea  (IAGP)
enlarged lymph nodes  (IAGP)
facial muscle spasm  (IAGP)
impaired behavioral response to xenobiotic  (IAGP)
impaired coordination  (IAGP)
impaired limb coordination  (IEA)
impaired righting response  (IAGP)
increased IgG1 level  (IAGP)
increased length of allograft survival  (IAGP)
lethargy  (IEA)
male infertility  (IEA)
pituitary gland hyperplasia  (IEA)
postnatal growth retardation  (IEA)
premature death  (IEA)
reduced fertility  (IEA)
seizures  (IAGP)
small Peyer's patches  (IAGP)
small spleen  (IAGP)
small thymus  (IAGP)
tonic seizures  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Voltage-gated calcium channels. Catterall WA Cold Spring Harb Perspect Biol. 2011 Aug 1;3(8):a003947. doi: 10.1101/cshperspect.a003947.
2. Coding and noncoding variation of the human calcium-channel beta4-subunit gene CACNB4 in patients with idiopathic generalized epilepsy and episodic ataxia. Escayg A, etal., Am J Hum Genet 2000 May;66(5):1531-9. Epub 2000 Apr 4.
3. Genetic mapping of the peripheral sodium channel genes, Scn9a and Scn10a, in the mouse. Kozak CA and Sangameswaran L, Mamm Genome 1996 Oct;7(10):787-8.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans. Xu H, etal., J Pers Med. 2018 Feb 26;8(1). pii: jpm8010011. doi: 10.3390/jpm8010011.
Additional References at PubMed
PMID:13525   PMID:410895   PMID:1321503   PMID:1898718   PMID:5037658   PMID:7261997   PMID:7472490   PMID:7490102   PMID:7562514   PMID:7595494   PMID:8388308   PMID:8743987  
PMID:8889548   PMID:8892334   PMID:9039265   PMID:9143501   PMID:9293489   PMID:9530629   PMID:9562526   PMID:9628818   PMID:9685498   PMID:9705268   PMID:10076871   PMID:10322048  
PMID:10328888   PMID:10349636   PMID:10395577   PMID:10407181   PMID:10407195   PMID:10407196   PMID:10446746   PMID:10469844   PMID:10494839   PMID:10515159   PMID:10627593   PMID:10700579  
PMID:11042159   PMID:11076861   PMID:11217851   PMID:11700294   PMID:11980879   PMID:12151514   PMID:12223573   PMID:12477932   PMID:14500989   PMID:15108317   PMID:15175395   PMID:15489334  
PMID:15572359   PMID:16141072   PMID:16141073   PMID:16452087   PMID:16602821   PMID:16636205   PMID:16985003   PMID:17028169   PMID:17114649   PMID:17320843   PMID:17561408   PMID:18250082  
PMID:18287559   PMID:18809727   PMID:19000842   PMID:19723630   PMID:19755851   PMID:19755859   PMID:19966779   PMID:19996312   PMID:20188150   PMID:20439489   PMID:21220418   PMID:21267068  
PMID:21297076   PMID:21386911   PMID:21873635   PMID:22107844   PMID:22737983   PMID:22892567   PMID:24453333   PMID:24457600   PMID:24751537   PMID:24875574   PMID:25798587   PMID:25892515  
PMID:27003325   PMID:27160897   PMID:28671696   PMID:30786075   PMID:30995482   PMID:32325033   PMID:34321999   PMID:36417873   PMID:36808153  


Genomics

Comparative Map Data
Cacnb4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39252,318,332 - 52,566,816 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl252,318,337 - 52,566,843 (-)EnsemblGRCm39 Ensembl
GRCm38252,428,320 - 52,676,609 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl252,428,320 - 52,676,831 (-)EnsemblGRCm38mm10GRCm38
MGSCv37252,283,840 - 52,532,101 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36252,250,329 - 52,498,591 (-)NCBIMGSCv36mm8
Celera254,158,343 - 54,407,154 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map229.98NCBI
CACNB4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382151,832,771 - 152,099,167 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2151,832,771 - 152,099,167 (-)EnsemblGRCh38hg38GRCh38
GRCh372152,689,285 - 152,955,681 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362152,402,382 - 152,663,790 (-)NCBINCBI36Build 36hg18NCBI36
Build 342152,519,650 - 152,655,962NCBI
Celera2146,303,966 - 146,570,260 (-)NCBICelera
Cytogenetic Map2q23.3NCBI
HuRef2144,575,492 - 144,841,767 (-)NCBIHuRef
CHM1_12152,694,863 - 152,961,451 (-)NCBICHM1_1
T2T-CHM13v2.02152,284,205 - 152,568,400 (-)NCBIT2T-CHM13v2.0
Cacnb4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8357,315,900 - 57,578,271 (-)NCBIGRCr8
mRatBN7.2336,906,771 - 37,169,165 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl336,910,427 - 37,168,944 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx340,292,289 - 40,542,372 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0348,877,070 - 49,127,150 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0346,661,653 - 46,912,088 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0337,950,846 - 38,211,478 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl337,955,069 - 38,090,526 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0343,050,530 - 43,312,292 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4333,934,478 - 34,072,070 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1333,830,849 - 34,089,967 (-)NCBI
Celera335,052,892 - 35,186,998 (-)NCBICelera
Cytogenetic Map3q12NCBI
Cacnb4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544017,371,321 - 17,497,616 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544017,364,996 - 17,497,446 (-)NCBIChiLan1.0ChiLan1.0
CACNB4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21354,515,897 - 54,784,064 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B54,530,877 - 54,798,475 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B39,137,777 - 39,399,007 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B156,373,888 - 156,639,471 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B156,379,469 - 156,639,328 (-)Ensemblpanpan1.1panPan2
CACNB4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11952,987,170 - 53,116,410 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1952,993,618 - 53,116,140 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1952,993,618 - 53,116,140 (-)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2628,450,546 - 28,671,051 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01954,498,188 - 54,718,287 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1954,503,946 - 54,718,498 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11953,213,170 - 53,434,776 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01953,283,518 - 53,505,200 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01954,747,989 - 54,969,199 (-)NCBIUU_Cfam_GSD_1.0
Cacnb4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303115,871,570 - 116,122,930 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646925,494,883 - 25,740,223 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646925,494,820 - 25,745,783 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNB4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15186,434 - 459,856 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115402,801 - 455,691 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap3q14-q21NCBI
CACNB4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11037,240,749 - 37,518,174 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1037,246,991 - 37,388,059 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040162,034,798 - 162,305,942 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacnb4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248664,973,207 - 5,281,746 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248664,973,087 - 5,287,477 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cacnb4
8842 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7762
Count of miRNA genes:881
Interacting mature miRNAs:1232
Transcripts:ENSMUST00000078324, ENSMUST00000102760, ENSMUST00000102761, ENSMUST00000132322, ENSMUST00000148837, ENSMUST00000178799
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
10449151Hdl8_mhigh density lipoprotein (HDL) level 8 (mouse)23812972567072607Mouse
10449150Pvldlc1_mplasma VLDL-cholesterol 1 (mouse)23812972567072607Mouse
10449145Lanq1_mlanosterol level QTL 1 (mouse)23812972567072607Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)23997166573971811Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
1300645Alcp1_malcohol preference locus 1 (mouse)Not determined24522812867838868Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24813241282132495Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174826974682269934Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24826974682269934Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24826974682269934Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24826974682269934Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25244801986448136Mouse

Markers in Region
RH129575  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38252,428,400 - 52,428,596UniSTSGRCm38
MGSCv37252,283,920 - 52,284,116UniSTSGRCm37
Celera254,158,423 - 54,158,619UniSTS
Cytogenetic Map2C1.1UniSTS
RH118250  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38252,521,327 - 52,521,518UniSTSGRCm38
MGSCv37252,376,847 - 52,377,038UniSTSGRCm37
Celera254,251,154 - 54,251,345UniSTS
Cytogenetic Map2C1.1UniSTS
Whitehead/MRC_RH2807.73UniSTS
UniSTS:234389  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38252,619,885 - 52,620,037UniSTSGRCm38
GRCm381132,284,527 - 132,284,679UniSTSGRCm38
MGSCv37252,475,405 - 52,475,557UniSTSGRCm37
MGSCv371134,181,104 - 134,181,256UniSTSGRCm37
Celera1134,891,773 - 134,891,925UniSTS
Celera254,350,787 - 54,350,939UniSTS
Cytogenetic Map2C1.1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map19C3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB100402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF039417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF061330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF068899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL845467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL928960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB131344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ128061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT978680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U80985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U80986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000078324   ⟹   ENSMUSP00000077438
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl252,318,337 - 52,566,843 (-)Ensembl
GRCm38.p6 Ensembl252,428,325 - 52,676,831 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102760   ⟹   ENSMUSP00000099821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl252,318,337 - 52,448,572 (-)Ensembl
GRCm38.p6 Ensembl252,428,325 - 52,558,560 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102761   ⟹   ENSMUSP00000099822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl252,318,337 - 52,448,579 (-)Ensembl
GRCm38.p6 Ensembl252,428,325 - 52,558,567 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl252,446,199 - 52,446,721 (-)Ensembl
GRCm38.p6 Ensembl252,556,187 - 52,556,709 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148837
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl252,565,739 - 52,566,155 (-)Ensembl
GRCm38.p6 Ensembl252,675,727 - 52,676,143 (-)Ensembl
RefSeq Acc Id: ENSMUST00000178799   ⟹   ENSMUSP00000136811
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl252,318,332 - 52,566,594 (-)Ensembl
GRCm38.p6 Ensembl252,428,320 - 52,676,582 (-)Ensembl
RefSeq Acc Id: NM_001037099   ⟹   NP_001032176
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,318,337 - 52,566,592 (-)NCBI
GRCm38252,428,320 - 52,676,609 (-)NCBI
MGSCv37252,283,840 - 52,532,101 (-)RGD
Celera254,158,343 - 54,407,181 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001285426   ⟹   NP_001272355
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,318,337 - 52,566,105 (-)NCBI
GRCm38252,428,320 - 52,676,143 (-)NCBI
Celera254,158,343 - 54,407,181 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001285427   ⟹   NP_001272356
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,318,337 - 52,448,572 (-)NCBI
GRCm38252,428,320 - 52,558,611 (-)NCBI
Celera254,158,343 - 54,407,181 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001285428   ⟹   NP_001272357
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,318,332 - 52,565,871 (-)NCBI
GRCm38252,428,320 - 52,675,859 (-)NCBI
Celera254,158,343 - 54,407,181 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355059   ⟹   NP_001341988
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,318,337 - 52,448,572 (-)NCBI
GRCm38252,428,320 - 52,558,611 (-)NCBI
Sequence:
RefSeq Acc Id: NM_146123   ⟹   NP_666235
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,318,337 - 52,448,572 (-)NCBI
GRCm38252,428,320 - 52,558,611 (-)NCBI
MGSCv37252,283,840 - 52,532,101 (-)RGD
Celera254,158,343 - 54,407,181 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497641   ⟹   XP_006497704
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,321,011 - 52,566,175 (-)NCBI
GRCm38252,430,999 - 52,676,171 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497642   ⟹   XP_006497705
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,321,011 - 52,448,990 (-)NCBI
GRCm38252,430,999 - 52,558,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315163   ⟹   XP_017170652
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,321,011 - 52,448,260 (-)NCBI
GRCm38252,430,999 - 52,558,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247010   ⟹   XP_030102870
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,321,011 - 52,566,172 (-)NCBI
GRCm38252,430,999 - 52,676,168 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157796   ⟹   XP_036013689
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,321,011 - 52,422,639 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157797   ⟹   XP_036013690
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,321,011 - 52,566,358 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157798   ⟹   XP_036013691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,321,011 - 52,566,631 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157799   ⟹   XP_036013692
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,321,011 - 52,566,231 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157800   ⟹   XP_036013693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,321,011 - 52,566,816 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157801   ⟹   XP_036013694
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,321,011 - 52,448,979 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157802   ⟹   XP_036013695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,321,011 - 52,448,979 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157805   ⟹   XP_036013698
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,321,011 - 52,367,823 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157807   ⟹   XP_036013700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,321,011 - 52,422,633 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157808   ⟹   XP_036013701
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39252,321,011 - 52,355,925 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001032176 (Get FASTA)   NCBI Sequence Viewer  
  NP_001272355 (Get FASTA)   NCBI Sequence Viewer  
  NP_001272356 (Get FASTA)   NCBI Sequence Viewer  
  NP_001272357 (Get FASTA)   NCBI Sequence Viewer  
  NP_001341988 (Get FASTA)   NCBI Sequence Viewer  
  NP_666235 (Get FASTA)   NCBI Sequence Viewer  
  XP_006497704 (Get FASTA)   NCBI Sequence Viewer  
  XP_006497705 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170652 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102870 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013689 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013690 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013691 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013692 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013693 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013694 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013695 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013698 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013700 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013701 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB95484 (Get FASTA)   NCBI Sequence Viewer  
  AAC19387 (Get FASTA)   NCBI Sequence Viewer  
  AAC53036 (Get FASTA)   NCBI Sequence Viewer  
  AAC53037 (Get FASTA)   NCBI Sequence Viewer  
  AAH26479 (Get FASTA)   NCBI Sequence Viewer  
  BAC30073 (Get FASTA)   NCBI Sequence Viewer  
  BAC31681 (Get FASTA)   NCBI Sequence Viewer  
  BAC37703 (Get FASTA)   NCBI Sequence Viewer  
  BAC80139 (Get FASTA)   NCBI Sequence Viewer  
  BAE27855 (Get FASTA)   NCBI Sequence Viewer  
  BAE34578 (Get FASTA)   NCBI Sequence Viewer  
  CAX15925 (Get FASTA)   NCBI Sequence Viewer  
  EDL26909 (Get FASTA)   NCBI Sequence Viewer  
  EDL26910 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000077438
  ENSMUSP00000077438.7
  ENSMUSP00000099821
  ENSMUSP00000099821.4
  ENSMUSP00000099822
  ENSMUSP00000099822.3
  ENSMUSP00000136811.2
GenBank Protein Q8R0S4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001032176   ⟸   NM_001037099
- Peptide Label: isoform a
- UniProtKB: Q8BRN6 (UniProtKB/Swiss-Prot),   Q3UHK2 (UniProtKB/Swiss-Prot),   Q8CAJ9 (UniProtKB/Swiss-Prot),   Q8R0S4 (UniProtKB/Swiss-Prot),   A2ATZ8 (UniProtKB/TrEMBL),   J3QK20 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_666235   ⟸   NM_146123
- Peptide Label: isoform b
- UniProtKB: Q3TYI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272357   ⟸   NM_001285428
- Peptide Label: isoform e
- UniProtKB: Q3TYI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272355   ⟸   NM_001285426
- Peptide Label: isoform c
- UniProtKB: Q3TYI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272356   ⟸   NM_001285427
- Peptide Label: isoform d
- UniProtKB: Q3TYI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497704   ⟸   XM_006497641
- Peptide Label: isoform X2
- UniProtKB: Q3TYI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497705   ⟸   XM_006497642
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017170652   ⟸   XM_017315163
- Peptide Label: isoform X2
- UniProtKB: Q3TYI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001341988   ⟸   NM_001355059
- Peptide Label: isoform f
RefSeq Acc Id: XP_030102870   ⟸   XM_030247010
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000136811   ⟸   ENSMUST00000178799
RefSeq Acc Id: ENSMUSP00000077438   ⟸   ENSMUST00000078324
RefSeq Acc Id: ENSMUSP00000099822   ⟸   ENSMUST00000102761
RefSeq Acc Id: ENSMUSP00000099821   ⟸   ENSMUST00000102760
RefSeq Acc Id: XP_036013693   ⟸   XM_036157800
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036013691   ⟸   XM_036157798
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036013690   ⟸   XM_036157797
- Peptide Label: isoform X2
- UniProtKB: Q3TYI5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036013692   ⟸   XM_036157799
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036013694   ⟸   XM_036157801
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036013695   ⟸   XM_036157802
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036013689   ⟸   XM_036157796
- Peptide Label: isoform X1
- UniProtKB: Q3TYI5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036013700   ⟸   XM_036157807
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036013698   ⟸   XM_036157805
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036013701   ⟸   XM_036157808
- Peptide Label: isoform X6
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R0S4-F1-model_v2 AlphaFold Q8R0S4 1-519 view protein structure

Promoters
RGD ID:6830946
Promoter ID:MM_KWN:29214
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000030068
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36252,411,881 - 52,412,381 (-)MPROMDB
RGD ID:6830942
Promoter ID:MM_KWN:29215
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_146123,   UC008JRB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36252,413,931 - 52,414,431 (-)MPROMDB
RGD ID:6877362
Promoter ID:EPDNEW_M2107
Type:initiation region
Name:Cacnb4_2
Description:Mus musculus calcium channel, voltage-dependent, beta 4 subunit, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2108  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38252,558,560 - 52,558,620EPDNEW
RGD ID:6877314
Promoter ID:EPDNEW_M2108
Type:initiation region
Name:Cacnb4_1
Description:Mus musculus calcium channel, voltage-dependent, beta 4 subunit, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2107  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38252,676,093 - 52,676,153EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:103301 AgrOrtholog
Ensembl Genes ENSMUSG00000017412 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000078324 ENTREZGENE
  ENSMUST00000078324.7 UniProtKB/Swiss-Prot
  ENSMUST00000102760 ENTREZGENE
  ENSMUST00000102760.10 UniProtKB/Swiss-Prot
  ENSMUST00000102761 ENTREZGENE
  ENSMUST00000102761.9 UniProtKB/Swiss-Prot
  ENSMUST00000178799.8 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 Domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CAB1-4_N_A-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GK/Ca_channel_bsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCC_L_bsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12298 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:103301 ENTREZGENE
NCBI Gene 12298 ENTREZGENE
PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT L-TYPE CALCIUM CHANNEL SUBUNIT BETA-4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Guanylate_kin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VGCC_beta4Aa_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cacnb4 PhenoGen
PRINTS LCACHANNELB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART GuKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2ATZ8 ENTREZGENE, UniProtKB/TrEMBL
  CACB4_MOUSE UniProtKB/Swiss-Prot
  J3QK20 ENTREZGENE, UniProtKB/TrEMBL
  O54985_MOUSE UniProtKB/TrEMBL
  O88518_MOUSE UniProtKB/TrEMBL
  Q3TYI5 ENTREZGENE, UniProtKB/TrEMBL
  Q3UHK2 ENTREZGENE
  Q8BRN6 ENTREZGENE
  Q8CAJ9 ENTREZGENE
  Q8R0S4 ENTREZGENE
UniProt Secondary Q3UHK2 UniProtKB/Swiss-Prot
  Q8BRN6 UniProtKB/Swiss-Prot
  Q8CAJ9 UniProtKB/Swiss-Prot