Krtap10-22 (keratin associated protein 10-22) - Rat Genome Database

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Gene: Krtap10-22 (keratin associated protein 10-22) Mus musculus
Analyze
Symbol: Krtap10-22 (Ensembl: Gm3238)
Name: keratin associated protein 10-22 (Ensembl:predicted gene 3238)
RGD ID: 2299327
MGI Page MGI
Description: Predicted to enable identical protein binding activity. Orthologous to several human genes including KRTAP10-3 (keratin associated protein 10-3).
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: 100041261; Gm3238; hypothetical protein LOC100041261; keratin associated protein 10-like
RGD Orthologs
Human
Bonobo
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,606,467 - 77,607,159 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,606,467 - 77,607,159 (-)EnsemblGRCm39 Ensembl
GRCm381077,770,633 - 77,771,325 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,770,633 - 77,771,325 (-)EnsemblGRCm38mm10GRCm38
MGSCv371077,233,378 - 77,234,070 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361077,233,378 - 77,234,070 (-)NCBIMGSCv36mm8
Celera1078,815,598 - 78,816,290 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Krtap10-22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,606,467 - 77,607,159 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,606,467 - 77,607,159 (-)EnsemblGRCm39 Ensembl
GRCm381077,770,633 - 77,771,325 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,770,633 - 77,771,325 (-)EnsemblGRCm38mm10GRCm38
MGSCv371077,233,378 - 77,234,070 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361077,233,378 - 77,234,070 (-)NCBIMGSCv36mm8
Celera1078,815,598 - 78,816,290 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
KRTAP10-11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382144,646,414 - 44,647,650 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2144,646,414 - 44,647,650 (+)EnsemblGRCh38hg38GRCh38
GRCh372146,066,331 - 46,067,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362144,890,759 - 44,891,995 (+)NCBINCBI36Build 36hg18NCBI36
Build 342144,890,758 - 44,891,765NCBI
Celera2131,173,967 - 31,175,203 (+)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2131,440,483 - 31,441,719 (+)NCBIHuRef
CHM1_12145,627,180 - 45,628,416 (+)NCBICHM1_1
T2T-CHM13v2.02143,006,870 - 43,008,106 (+)NCBIT2T-CHM13v2.0
LOC100988625
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22240,692,042 - 40,693,834 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12135,562,705 - 35,564,494 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02130,940,722 - 30,942,340 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12144,235,427 - 44,236,612 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2144,235,427 - 44,236,323 (+)Ensemblpanpan1.1panPan2
LOC102151833
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13138,306,220 - 38,307,536 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3139,078,681 - 39,079,659 (-)NCBIDog10K_Boxer_Tasha
LOC100622826
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113207,403,140 - 207,404,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213217,289,991 - 217,290,963 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Krtap10-22
12 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:188
Count of miRNA genes:176
Interacting mature miRNAs:187
Transcripts:ENSMUST00000168298
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7398721682491121Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse

Markers in Region
AA589524  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371077,316,328 - 77,316,416UniSTSGRCm37
Celera1078,899,304 - 78,899,392UniSTS
Cytogenetic Map10C1UniSTS
cM Map10 UniSTS
Whitehead/MRC_RH10878.6UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000168298   ⟹   ENSMUSP00000130008
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,606,467 - 77,607,159 (-)Ensembl
GRCm38.p6 Ensembl1077,770,633 - 77,771,325 (-)Ensembl
RefSeq Acc Id: NM_001101630   ⟹   NP_001095100
RefSeq Status: INFERRED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,606,467 - 77,607,159 (-)NCBI
GRCm381077,770,633 - 77,771,325 (-)ENTREZGENE
MGSCv371077,233,378 - 77,234,070 (-)RGD
Celera1078,815,598 - 78,816,290 (-)RGD
cM Map10 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001095100 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL31785 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000130008
  ENSMUSP00000130008.2
Reference Protein Sequences
RefSeq Acc Id: NP_001095100   ⟸   NM_001101630
- UniProtKB: W4VSP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000130008   ⟸   ENSMUST00000168298

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-W4VSP7-F1-model_v2 AlphaFold W4VSP7 1-230 view protein structure

Promoters
RGD ID:8672442
Promoter ID:EPDNEW_M14252
Type:single initiation site
Name:Gm3238_1
Description:Mus musculus predicted gene 3238 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381077,771,394 - 77,771,454EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3781416 AgrOrtholog
Ensembl Genes ENSMUSG00000095817 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000168298 ENTREZGENE
  ENSMUST00000168298.2 UniProtKB/TrEMBL
InterPro Keratin-assoc UniProtKB/TrEMBL
KEGG Report mmu:100041261 UniProtKB/TrEMBL
MGD MGI:3781416 ENTREZGENE
NCBI Gene 100041261 ENTREZGENE
PANTHER KERATIN-ASSOCIATED PROTEIN 10-6 UniProtKB/TrEMBL
  PTHR23262 UniProtKB/TrEMBL
Pfam Keratin_B2_2 UniProtKB/TrEMBL
PhenoGen Krtap10-22 PhenoGen
UniProt W4VSP7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-02-19 Krtap10-22  keratin associated protein 10-22  Gm3238  predicted gene 3238  Symbol and/or name updated 27372883 PROVISIONAL