LOC100988625 (keratin-associated protein 10-11) - Rat Genome Database

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Gene: LOC100988625 (keratin-associated protein 10-11) Pan paniscus
Analyze
Symbol: LOC100988625 (Ensembl: KRTAP10-11)
Name: keratin-associated protein 10-11 (Ensembl:keratin associated protein 10-11)
RGD ID: 11921968
Description: ASSOCIATED WITH autistic disorder (ortholog); autoimmune polyendocrine syndrome type 1 (ortholog); cataract 9 multiple types (ortholog); FOUND IN cytosol (inferred); intermediate filament (inferred); keratin filament (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: keratin-associated protein 10-3
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22240,692,042 - 40,693,834 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12135,562,705 - 35,564,494 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02130,940,722 - 30,942,340 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12144,235,427 - 44,236,612 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2144,235,427 - 44,236,323 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC100988625
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22240,692,042 - 40,693,834 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12135,562,705 - 35,564,494 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02130,940,722 - 30,942,340 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12144,235,427 - 44,236,612 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2144,235,427 - 44,236,323 (+)Ensemblpanpan1.1panPan2
KRTAP10-11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382144,646,414 - 44,647,650 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2144,646,414 - 44,647,650 (+)EnsemblGRCh38hg38GRCh38
GRCh372146,066,331 - 46,067,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362144,890,759 - 44,891,995 (+)NCBINCBI36Build 36hg18NCBI36
Build 342144,890,758 - 44,891,765NCBI
Celera2131,173,967 - 31,175,203 (+)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2131,440,483 - 31,441,719 (+)NCBIHuRef
CHM1_12145,627,180 - 45,628,416 (+)NCBICHM1_1
T2T-CHM13v2.02143,006,870 - 43,008,106 (+)NCBIT2T-CHM13v2.0
Krtap10-22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,606,467 - 77,607,159 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,606,467 - 77,607,159 (-)EnsemblGRCm39 Ensembl
GRCm381077,770,633 - 77,771,325 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,770,633 - 77,771,325 (-)EnsemblGRCm38mm10GRCm38
MGSCv371077,233,378 - 77,234,070 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361077,233,378 - 77,234,070 (-)NCBIMGSCv36mm8
Celera1078,815,598 - 78,816,290 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
LOC102151833
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13138,306,220 - 38,307,536 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3139,078,681 - 39,079,659 (-)NCBIDog10K_Boxer_Tasha
LOC100622826
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113207,403,140 - 207,404,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213217,289,991 - 217,290,963 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000041213   ⟹   ENSPPAP00000018481
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2144,235,427 - 44,236,323 (+)Ensembl
RefSeq Acc Id: XM_057300929   ⟹   XP_057156912
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22240,692,042 - 40,693,834 (+)NCBI
NHGRI_mPanPan12135,562,705 - 35,564,494 (+)NCBI
RefSeq Acc Id: XM_063601459   ⟹   XP_063457529
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22240,692,042 - 40,693,539 (+)NCBI
Protein Sequences
Protein RefSeqs XP_057156912 (Get FASTA)   NCBI Sequence Viewer  
  XP_063457529 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000018481.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000018481   ⟸   ENSPPAT00000041213
RefSeq Acc Id: XP_057156912   ⟸   XM_057300929
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063457529   ⟸   XM_063601459
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032384 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041213.1 UniProtKB/TrEMBL
InterPro KAP UniProtKB/TrEMBL
NCBI Gene LOC100988625 ENTREZGENE
PANTHER KERATIN-ASSOCIATED PROTEIN 10-4-RELATED UniProtKB/TrEMBL
  PTHR23262 UniProtKB/TrEMBL
Pfam Keratin_B2_2 UniProtKB/TrEMBL
UniProt A0A2R9AMA7_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-21 LOC100988625  keratin-associated protein 10-11  LOC100988625  keratin-associated protein 10-3  Symbol and/or name change 5135510 APPROVED
2020-07-01 LOC100988625  keratin-associated protein 10-3  LOC100988625  keratin-associated protein 10-11  Symbol and/or name change 5135510 APPROVED