Taf15 (TATA-box binding protein associated factor 15) - Rat Genome Database

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Gene: Taf15 (TATA-box binding protein associated factor 15) Heterocephalus glaber
Analyze
Symbol: Taf15
Name: TATA-box binding protein associated factor 15
RGD ID: 18931216
Description: ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); INVOLVED IN gene expression (ortholog); mRNA stabilization (ortholog); RNA splicing (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH chondrosarcoma (ortholog); Disease Progression (ortholog); extraskeletal myxoid chondrosarcoma (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TATA-binding protein-associated factor 2N
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248753,278,055 - 3,311,915 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nucleolus  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Taf15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248753,278,055 - 3,311,915 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TAF15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381735,809,484 - 35,847,242 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1735,809,482 - 35,864,615 (+)EnsemblGRCh38hg38GRCh38
GRCh371734,136,488 - 34,174,246 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361731,160,601 - 31,198,351 (+)NCBINCBI36Build 36hg18NCBI36
Build 341731,160,600 - 31,198,350NCBI
Celera1731,046,770 - 31,084,502 (+)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1730,321,649 - 30,359,382 (+)NCBIHuRef
CHM1_11734,201,011 - 34,238,813 (+)NCBICHM1_1
T2T-CHM13v2.01736,757,395 - 36,795,152 (+)NCBIT2T-CHM13v2.0
Taf15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,363,897 - 83,397,569 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,363,912 - 83,397,569 (+)EnsemblGRCm39 Ensembl
GRCm381183,473,073 - 83,506,743 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,473,086 - 83,506,743 (+)EnsemblGRCm38mm10GRCm38
MGSCv371183,286,610 - 83,320,242 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,289,303 - 83,322,935 (+)NCBIMGSCv36mm8
Celera1193,074,869 - 93,108,290 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1150.49NCBI
Taf15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81068,770,408 - 68,802,458 (+)NCBIGRCr8
mRatBN7.21068,272,921 - 68,304,951 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1068,272,969 - 68,304,949 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1072,892,923 - 72,924,953 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01072,398,306 - 72,430,336 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01067,862,356 - 67,894,386 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01070,689,863 - 70,721,892 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1070,689,863 - 70,721,892 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01070,322,901 - 70,355,480 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01071,151,887 - 71,181,718 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41071,555,890 - 71,587,919 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11844,371,798 - 44,373,458 (+)NCBI
Celera1067,214,411 - 67,246,332 (+)NCBICelera
Cytogenetic Map10q26NCBI
Taf15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495548110,252,393 - 10,274,860 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495548110,242,839 - 10,274,961 (+)NCBIChiLan1.0ChiLan1.0
TAF15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21928,629,863 - 28,667,617 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11730,509,133 - 30,546,872 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01720,948,186 - 20,985,925 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11721,243,270 - 21,280,464 (-)NCBIpanpan1.1PanPan1.1panPan2
TAF15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1937,842,772 - 37,873,302 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl937,842,772 - 37,873,094 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha937,067,221 - 37,097,519 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0938,654,725 - 38,685,035 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl938,654,496 - 38,684,850 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1937,437,520 - 37,467,783 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0937,723,060 - 37,753,279 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0937,810,490 - 37,840,775 (-)NCBIUU_Cfam_GSD_1.0
Taf15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560236,844,860 - 36,875,859 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936490199,201 - 230,244 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936490199,226 - 230,190 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1239,686,884 - 39,724,769 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11239,687,171 - 39,716,761 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,256,375 - 41,277,359 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAF15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11629,284,769 - 29,322,601 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1629,284,770 - 29,322,703 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666075652,014 - 690,022 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004870661   ⟹   XP_004870718
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248753,278,055 - 3,311,915 (+)NCBI
RefSeq Acc Id: XM_004870662   ⟹   XP_004870719
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248753,278,055 - 3,311,915 (+)NCBI
RefSeq Acc Id: XM_021248891   ⟹   XP_021104550
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248753,278,058 - 3,311,915 (+)NCBI
RefSeq Acc Id: XM_021248892   ⟹   XP_021104551
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248753,278,055 - 3,311,915 (+)NCBI
RefSeq Acc Id: XM_021248893   ⟹   XP_021104552
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248753,278,060 - 3,311,915 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004870718 (Get FASTA)   NCBI Sequence Viewer  
  XP_004870719 (Get FASTA)   NCBI Sequence Viewer  
  XP_021104550 (Get FASTA)   NCBI Sequence Viewer  
  XP_021104551 (Get FASTA)   NCBI Sequence Viewer  
  XP_021104552 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007268
Reference Protein Sequences
RefSeq Acc Id: XP_004870718   ⟸   XM_004870661
- Peptide Label: isoform X1
- UniProtKB: G5B745 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104551   ⟸   XM_021248892
- Peptide Label: isoform X3
- UniProtKB: G5B745 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004870719   ⟸   XM_004870662
- Peptide Label: isoform X4
- UniProtKB: G5B745 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104550   ⟸   XM_021248891
- Peptide Label: isoform X2
- UniProtKB: G5B745 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104552   ⟸   XM_021248893
- Peptide Label: isoform X5
- UniProtKB: G5B745 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005292 ENTREZGENE
Ensembl Transcript ENSHGLT00000007353 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  Zinc finger, RanBP2-type UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  TET_fam UniProtKB/TrEMBL
  Znf_RanBP2 UniProtKB/TrEMBL
  Znf_RanBP2_sf UniProtKB/TrEMBL
NCBI Gene Taf15 ENTREZGENE
PANTHER RNA BINDING PROTEIN UniProtKB/TrEMBL
  TATA-BINDING PROTEIN-ASSOCIATED FACTOR 2N UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PRINTS EGGSHELL UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
  ZF_RANBP2_1 UniProtKB/TrEMBL
  ZF_RANBP2_2 UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
  ZnF_RBZ UniProtKB/TrEMBL
Superfamily-SCOP Ran binding protein zinc finger-like UniProtKB/TrEMBL
  RNA-binding domain, RBD UniProtKB/TrEMBL
UniProt G5B745 ENTREZGENE, UniProtKB/TrEMBL