Taf15 (TATA-box binding protein associated factor 15)

Gene: Taf15 (TATA-box binding protein associated factor 15) Ictidomys tridecemlineatus

Analyze

Symbol:

Taf15

Name:

TATA-box binding protein associated factor 15

RGD ID:

12628825

Description:

ENCODES a protein that exhibits metal ion binding (inferred); mRNA 3'-UTR binding (inferred); RNA binding (inferred); INVOLVED IN gene expression (ortholog); mRNA stabilization (ortholog); RNA splicing (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH chondrosarcoma (ortholog); Disease Progression (ortholog); extraskeletal myxoid chondrosarcoma (ortholog); FOUND IN nucleolus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

TATA-binding protein-associated factor 2N

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	36,844,860 - 36,875,859 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	199,201 - 230,244 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	199,226 - 230,190 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chondrosarcoma (ISO)

Disease Progression (ISO)

extraskeletal myxoid chondrosarcoma (ISO)

genetic disease (ISO)

osteosarcoma (ISO)

Stomach Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

gene expression (IEA,ISO)

mRNA stabilization (IEA,ISO)

regulation of DNA-templated transcription (IEA)

RNA splicing (IEA,ISO)

Cellular Component

cytoplasm (IEA)

nucleolus (ISO)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

metal ion binding (IEA)

mRNA 3'-UTR binding (IEA)

protein binding (ISO)

RNA binding (IEA)

transcription coregulator activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription initiation pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Taf15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	36,844,860 - 36,875,859 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	199,201 - 230,244 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	199,226 - 230,190 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TAF15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	35,809,484 - 35,847,242 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	35,809,482 - 35,864,615 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	34,136,488 - 34,174,246 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	31,160,601 - 31,198,351 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	31,160,600 - 31,198,350	NCBI
Celera	17	31,046,770 - 31,084,502 (+)	NCBI		Celera
Cytogenetic Map	17	q12	NCBI
HuRef	17	30,321,649 - 30,359,382 (+)	NCBI		HuRef
CHM1_1	17	34,201,011 - 34,238,813 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	36,757,395 - 36,795,152 (+)	NCBI		T2T-CHM13v2.0

Taf15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	83,363,897 - 83,397,569 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	83,363,912 - 83,397,569 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	83,473,073 - 83,506,743 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	83,473,086 - 83,506,743 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	83,286,610 - 83,320,242 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	83,289,303 - 83,322,935 (+)	NCBI		MGSCv36	mm8
Celera	11	93,074,869 - 93,108,290 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	50.49	NCBI

Taf15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	68,770,408 - 68,802,458 (+)	NCBI		GRCr8
mRatBN7.2	10	68,272,921 - 68,304,951 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	68,272,969 - 68,304,949 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	72,892,923 - 72,924,953 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	72,398,306 - 72,430,336 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	67,862,356 - 67,894,386 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	70,689,863 - 70,721,892 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	70,689,863 - 70,721,892 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	70,322,901 - 70,355,480 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	10	71,151,887 - 71,181,718 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	71,555,890 - 71,587,919 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	44,371,798 - 44,373,458 (+)	NCBI
Celera	10	67,214,411 - 67,246,332 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

Taf15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	10,252,393 - 10,274,860 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	10,242,839 - 10,274,961 (+)	NCBI	ChiLan1.0	ChiLan1.0

TAF15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	28,629,863 - 28,667,617 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	30,509,133 - 30,546,872 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	20,948,186 - 20,985,925 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	21,243,270 - 21,280,464 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

TAF15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	37,842,772 - 37,873,302 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	37,842,772 - 37,873,094 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	37,067,221 - 37,097,519 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	38,654,725 - 38,685,035 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	38,654,496 - 38,684,850 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	37,437,520 - 37,467,783 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	37,723,060 - 37,753,279 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	37,810,490 - 37,840,775 (-)	NCBI		UU_Cfam_GSD_1.0

TAF15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	39,686,884 - 39,724,769 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	39,687,171 - 39,716,761 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	41,256,375 - 41,277,359 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TAF15
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	29,284,769 - 29,322,601 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	29,284,770 - 29,322,703 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	652,014 - 690,022 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Taf15
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624875	3,278,055 - 3,311,915 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005321493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000002084 ⟹ ENSSTOP00000001856

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936490	207,475 - 229,898 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000037476 ⟹ ENSSTOP00000028403

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936490	199,201 - 230,244 (+)	Ensembl

RefSeq Acc Id:

XM_005321493 ⟹ XP_005321550

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	36,844,860 - 36,875,859 (-)	NCBI
SpeTri2.0	NW_004936490	199,226 - 230,190 (+)	NCBI

Sequence:

show sequence

CCTCAGCCCGCCGCGCCGCGCTCGGAACAGCTCCGGCCGCCGCGCCGCCTGGCTCTTGTATTCC
TTGTTCTCGGCGGGCTCTGGGGGCTCCGCGCCGCGGCCGTTAGTCATGTCGGATTCTGGAAGTT
ACGGTCAATCTGGGGGTGAACAGCAAAGTTACTCTTCCTATGGAAATCAAGGCAACCAAGGCTA
TGGACAAGCACCACAAAGCTATTCTGGCTATGGACAAACGACTGATTCTTCATATGGACAGAAC
TATGGTGGTTACTCCAGTTATGGACAGAACCAATCAGGTTATTCACAGTCCTATGGTGGTTATG
AGAATCAAAAGCCCAGCTCATATGGCCAGCAATCATATAATAACCAAGGACAACAAAACACGGA
ATCATCAGGAGGCCAAGGTGGAAGAGCGCCTTCGTATGACCAGTCAGACTATGGTCAACAAGAT
TCATATGACCAGCAGTCAGGCTATGATCAACAGCAAGGCTCATATAACGAGCAGTCAAATTATG
ATCAGCAACATGATTCCTATAATCAAAACCAGCAGTCATATCATTCCCAAAGGGAAAATTATAG
CCACCACACACAAGATGACCGTCGTGATGTGAGTAGGTATGGAGAAGATAATAGAGGATATGGC
GGGTCACAGGGAGGAGGTAGAGGGCGTGGGGGATATGACAAGGATGGAAGAGGTCCTATGACAG
GATCAAGTGGTGGTGACCGCGGTGGCTTCAAAAATTTTGGTGGTCACAGGGATTATGGACCGAG
ACCAGATGCTGATTCAGAGTCTGATAATTCAGATAACAACACAATCTTTGTGCAAGGACTTGGG
GAGGGTGTGTCTACTGATCAAGTGGGAGAGTTCTTTAAGCAAATAGGTATCATCAAGACAAACA
AGAAGACTGGAAAGCCAATGATAAATCTTTATACAGACAAAGACACAGGAAAACCAAAAGGGGA
GGCAACAGTGTCGTTTGATGATCCTCCTTCAGCTAAGGCAGCTATTGACTGGTTTGATGGAAAG
GAATTCCATGGCAACATCATTAAAGTGTCTTTTGCCACCAGAAGACCTGAATTTATGAGAGGAG
GTGGAAGTGGAGGTGGGCGGCGAGGCCGAGGCGGATATAGAGGCCGTGGAGGCTTTCAGGGAAG
AGGTGGTGACCCCAAAAATGGAGATTGGGTTTGTCCTAATCCGTCATGTGGAAATATGAACTTT
GCTCGAAGGAATTCTTGTAATCAGTGCAATGAACCCAGACCAGAGGATTCTCGTCCCTCAGGAG
GAGATTTCCGGGGGAGAGGCTATGGTGGAGAGAGAGGCTACAGAGGTCGTGGGGGCAGAGGTGG
AGACCGAGGCGGCTATGGTGGAGACAGAAGTGGGGGTGGCTATGGTGGAGACAGAAGTGGTGGC
AGTGGATATGGTGGAGATAGAAGTGGGGGTGGCTATGGTGGAGACAGAAGTGGGGGTGGTTATG
GTGGGGACAGAGGAGGTGGCTATGGTGGAGACCGAGGAGGTAGCTACGGTGGAGACCGAGGAGG
AGGCTACGGTGGAGACCGAGGAGGCTACGGTGGAGACCGAGGTGGCTACGGAGGAGACCGAGGT
GGCTATGGAGGAGACCGAGGTGGCTACGGAGGAGACCGAAGTCGGGGGGGCTATGGAGGAGAAC
GTGGTGGTGGTGGTGGAGGCTATGGTGGAGACCGAAGTGGAGGCTACGGAGGAGACAGGAGTGG
TGGGGGCTATGGAGGAGACCGAGGAGGGGGATATGGAGGAGACCGAGGTGGCTATGGAGGAGAC
CGAGGTGGATATGGAGGCAAAATGGGAGGAAGAAACGACTACAGAAATGATCAGCGCAACCGAC
CGTACTGAGGACTGTTTTGAATGTTTCTTTGTCTCTGACATGATTCATAATGAAATTGCCAGAG
TTTTGCCTGCTGCTTTCCTCGTGGCCTCTTGGGTAGTGAAATTAAGTGACATTTGGATTTTTAT
TTGGGTGGGAGGGCTGGGGCAGTTTTTTTCTTTTAGAAATGTCCATTGAAAATTCCTTTTTTAG
TTTTCCATTCTTCTTCTTCCCAACCCTTGAAGCTAAGTGCATTGTAAAATATTGCCAAAATGGA
AAGTGTTTTGTAATACTGCAATAAAGGCTGCTTGTTTTTGTGGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005321550	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000001856.3
	ENSSTOP00000028403.1
GenBank Protein	KAG3269473	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005321550 ⟸ XM_005321493

- UniProtKB:

A0A287D4C2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSDSGSYGQSGGEQQSYSSYGNQGNQGYGQAPQSYSGYGQTTDSSYGQNYGGYSSYGQNQSGYS
QSYGGYENQKPSSYGQQSYNNQGQQNTESSGGQGGRAPSYDQSDYGQQDSYDQQSGYDQQQGSY
NEQSNYDQQHDSYNQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKD
GRGPMTGSSGGDRGGFKNFGGHRDYGPRPDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQI
GIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRR
PEFMRGGGSGGGRRGRGGYRGRGGFQGRGGDPKNGDWVCPNPSCGNMNFARRNSCNQCNEPRPE
DSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSGGSGYGGDRSGGGYGGD
RSGGGYGGDRGGGYGGDRGGSYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSR
GGYGGERGGGGGGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGGDRGGYGGKMGGRNDYR
NDQRNRPY

hide sequence

RefSeq Acc Id:

ENSSTOP00000001856 ⟸ ENSSTOT00000002084

RefSeq Acc Id:

ENSSTOP00000028403 ⟸ ENSSTOT00000037476

Protein Domains

RanBP2-type RRM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000002081	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000002084.3	UniProtKB/TrEMBL
	ENSSTOT00000037476.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
	Zinc finger, RanBP2-type	UniProtKB/TrEMBL
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
	TET_fam	UniProtKB/TrEMBL
	Znf_RanBP2	UniProtKB/TrEMBL
	Znf_RanBP2_sf	UniProtKB/TrEMBL
NCBI Gene	Taf15	ENTREZGENE
PANTHER	PTHR23238	UniProtKB/TrEMBL
	PTHR23238:SF25	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
PRINTS	EGGSHELL	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
	ZF_RANBP2_1	UniProtKB/TrEMBL
	ZF_RANBP2_2	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
	ZnF_RBZ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
	SSF90209	UniProtKB/TrEMBL
UniProt	A0A287D4C2	ENTREZGENE, UniProtKB/TrEMBL
	I3LZR3_ICTTR	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations