TAF15 (TATA-box binding protein associated factor 15) - Rat Genome Database

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Gene: TAF15 (TATA-box binding protein associated factor 15) Sus scrofa
Analyze
Symbol: TAF15
Name: TATA-box binding protein associated factor 15
RGD ID: 14292594
Description: ENCODES a protein that exhibits metal ion binding (inferred); mRNA 3'-UTR binding (inferred); RNA binding (inferred); INVOLVED IN gene expression (ortholog); mRNA stabilization (ortholog); RNA splicing (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH chondrosarcoma (ortholog); Disease Progression (ortholog); extraskeletal myxoid chondrosarcoma (ortholog); FOUND IN nucleolus (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: TATA-binding protein-associated factor 2N
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1239,686,884 - 39,724,769 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11239,687,171 - 39,716,761 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,256,375 - 41,277,359 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleolus  (ISO)
nucleoplasm  (IEA)
nucleus  (IBA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22143032   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TAF15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1239,686,884 - 39,724,769 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11239,687,171 - 39,716,761 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,256,375 - 41,277,359 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAF15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381735,809,484 - 35,847,242 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1735,809,482 - 35,864,615 (+)EnsemblGRCh38hg38GRCh38
GRCh371734,136,488 - 34,174,246 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361731,160,601 - 31,198,351 (+)NCBINCBI36Build 36hg18NCBI36
Build 341731,160,600 - 31,198,350NCBI
Celera1731,046,770 - 31,084,502 (+)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1730,321,649 - 30,359,382 (+)NCBIHuRef
CHM1_11734,201,011 - 34,238,813 (+)NCBICHM1_1
T2T-CHM13v2.01736,757,395 - 36,795,152 (+)NCBIT2T-CHM13v2.0
Taf15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,363,897 - 83,397,569 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,363,912 - 83,397,569 (+)EnsemblGRCm39 Ensembl
GRCm381183,473,073 - 83,506,743 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,473,086 - 83,506,743 (+)EnsemblGRCm38mm10GRCm38
MGSCv371183,286,610 - 83,320,242 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,289,303 - 83,322,935 (+)NCBIMGSCv36mm8
Celera1193,074,869 - 93,108,290 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1150.49NCBI
Taf15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81068,770,408 - 68,802,458 (+)NCBIGRCr8
mRatBN7.21068,272,921 - 68,304,951 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1068,272,969 - 68,304,949 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1072,892,923 - 72,924,953 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01072,398,306 - 72,430,336 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01067,862,356 - 67,894,386 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01070,689,863 - 70,721,892 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1070,689,863 - 70,721,892 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01070,322,901 - 70,355,480 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01071,151,887 - 71,181,718 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41071,555,890 - 71,587,919 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11844,371,798 - 44,373,458 (+)NCBI
Celera1067,214,411 - 67,246,332 (+)NCBICelera
Cytogenetic Map10q26NCBI
Taf15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495548110,252,393 - 10,274,860 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495548110,242,839 - 10,274,961 (+)NCBIChiLan1.0ChiLan1.0
TAF15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21928,629,863 - 28,667,617 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11730,509,133 - 30,546,872 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01720,948,186 - 20,985,925 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11721,243,270 - 21,280,464 (-)NCBIpanpan1.1PanPan1.1panPan2
TAF15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1937,842,772 - 37,873,302 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl937,842,772 - 37,873,094 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha937,067,221 - 37,097,519 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0938,654,725 - 38,685,035 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl938,654,496 - 38,684,850 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1937,437,520 - 37,467,783 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0937,723,060 - 37,753,279 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0937,810,490 - 37,840,775 (-)NCBIUU_Cfam_GSD_1.0
Taf15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560236,844,860 - 36,875,859 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936490199,201 - 230,244 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936490199,226 - 230,190 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11629,284,769 - 29,322,601 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1629,284,770 - 29,322,703 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666075652,014 - 690,022 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248753,278,055 - 3,311,915 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TAF15
1207 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 3 3 5 2 23 2 3 3
Low 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000019273   ⟹   ENSSSCP00000018762
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1239,686,884 - 39,724,769 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000074923   ⟹   ENSSSCP00000070444
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1239,686,884 - 39,716,961 (-)Ensembl
RefSeq Acc Id: NM_001315764   ⟹   NP_001302693
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11239,687,171 - 39,716,761 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001302693 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AEQ61461 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000018762.4
  ENSSSCP00000070444
  ENSSSCP00000070444.1
  ENSSSCP00060011877.1
  ENSSSCP00065047385.1
RefSeq Acc Id: NP_001302693   ⟸   NM_001315764
- UniProtKB: A0A8D2BCE6 (UniProtKB/TrEMBL),   A0A8X9AEW3 (UniProtKB/TrEMBL),   A0A8D2A829 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000018762   ⟸   ENSSSCT00000019273
RefSeq Acc Id: ENSSSCP00000070444   ⟸   ENSSSCT00000074923
Protein Domains
RanBP2-type   RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017707 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00060020447 UniProtKB/TrEMBL
  ENSSSCG00065077054 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019273.4 UniProtKB/TrEMBL
  ENSSSCT00000074923 ENTREZGENE
  ENSSSCT00000074923.2 UniProtKB/TrEMBL
  ENSSSCT00060027753.1 UniProtKB/TrEMBL
  ENSSSCT00065106527.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  Zinc finger, RanBP2-type UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  TET_fam UniProtKB/TrEMBL
  Znf_RanBP2 UniProtKB/TrEMBL
  Znf_RanBP2_sf UniProtKB/TrEMBL
KEGG Report ssc:100518332 UniProtKB/TrEMBL
NCBI Gene TAF15 ENTREZGENE
PANTHER PTHR23238 UniProtKB/TrEMBL
  PTHR23238:SF25 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PRINTS EGGSHELL UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
  ZF_RANBP2_1 UniProtKB/TrEMBL
  ZF_RANBP2_2 UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
  ZnF_RBZ UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
  SSF90209 UniProtKB/TrEMBL
UniProt A0A5G2RGR9_PIG UniProtKB/TrEMBL
  A0A8D2A829 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2BCE6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8X9AEW3 ENTREZGENE, UniProtKB/TrEMBL
  F1S187_PIG UniProtKB/TrEMBL
UniProt Secondary G8ENL3 UniProtKB/TrEMBL
VGNC ID VGNC:93711 ENTREZGENE