Slc34a1 (solute carrier family 34 member 1) - Rat Genome Database

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Pathways
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Gene: Slc34a1 (solute carrier family 34 member 1) Heterocephalus glaber
Analyze
Symbol: Slc34a1
Name: solute carrier family 34 member 1
RGD ID: 18930310
Description: ENCODES a protein that exhibits identical protein binding (ortholog); PDZ domain binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN arsenate ion transmembrane transport (ortholog); bone remodeling (ortholog); calcium ion homeostasis (ortholog); PARTICIPATES IN phosphate transport pathway; ASSOCIATED WITH Acidoses (ortholog); acute kidney failure (ortholog); anti-basement membrane glomerulonephritis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium-dependent phosphate transport protein 2A; solute carrier family 34 (sodium phosphate), member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473312,685,546 - 12,699,901 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473312,685,544 - 12,699,908 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
arsenate ion transmembrane transport  (ISO)
bone remodeling  (ISO)
calcium ion homeostasis  (ISO)
cellular response to metal ion  (ISO)
cellular response to parathyroid hormone stimulus  (ISO)
cellular response to phosphate starvation  (ISO)
cellular response to staurosporine  (ISO)
dentinogenesis  (ISO)
gene expression  (ISO)
gentamycin metabolic process  (ISO)
glycoprotein metabolic process  (ISO)
indole metabolic process  (ISO)
inorganic anion transport  (IEA)
inorganic diphosphate transport  (ISO)
intracellular phosphate ion homeostasis  (IEA)
kidney development  (ISO)
ossification  (ISO)
phosphate ion homeostasis  (IEA)
phosphate ion transmembrane transport  (ISO)
phosphate ion transport  (IEA)
positive regulation of membrane potential  (ISO)
positive regulation of phosphate transmembrane transport  (ISO)
positive regulation of sodium-dependent phosphate transport  (ISO)
response to cadmium ion  (IEA)
response to estradiol  (ISO)
response to growth hormone  (ISO)
response to lead ion  (IEA)
response to magnesium ion  (ISO)
response to mercury ion  (IEA)
response to nutrient  (ISO)
response to parathyroid hormone  (ISO)
response to peptide  (ISO)
response to peptide hormone  (ISO)
response to potassium ion  (ISO)
response to sodium phosphate  (ISO)
response to thyroid hormone  (ISO)
response to vitamin A  (ISO)
response to xenobiotic stimulus  (ISO)
sodium ion import across plasma membrane  (ISO)
sodium ion transmembrane transport  (IEA)
sodium-dependent phosphate transport  (IEA,ISO)
tricarboxylic acid metabolic process  (ISO)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc34a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473312,685,546 - 12,699,901 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473312,685,544 - 12,699,908 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC34A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385177,384,434 - 177,398,848 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5177,379,235 - 177,398,848 (+)EnsemblGRCh38hg38GRCh38
GRCh375176,811,435 - 176,825,849 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365176,744,041 - 176,758,455 (+)NCBINCBI36Build 36hg18NCBI36
Build 345176,744,060 - 176,758,454NCBI
Celera5171,675,605 - 171,689,835 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5171,732,061 - 171,746,276 (+)NCBIHuRef
CHM1_15176,244,481 - 176,258,897 (+)NCBICHM1_1
T2T-CHM13v2.05177,927,652 - 177,942,066 (+)NCBIT2T-CHM13v2.0
Slc34a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391355,547,435 - 55,562,508 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1355,546,000 - 55,563,405 (+)EnsemblGRCm39 Ensembl
GRCm381355,399,622 - 55,414,695 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1355,398,187 - 55,415,592 (+)EnsemblGRCm38mm10GRCm38
MGSCv371355,501,009 - 55,516,056 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361355,409,326 - 55,423,713 (+)NCBIMGSCv36mm8
Celera1356,453,307 - 56,468,818 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1329.81NCBI
Slc34a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,224,010 - 9,238,983 (-)NCBIGRCr8
mRatBN7.2179,218,876 - 9,233,852 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,218,876 - 9,233,852 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx179,234,994 - 9,250,089 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01710,765,022 - 10,780,032 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0179,231,384 - 9,246,479 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,747,766 - 9,762,739 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,747,752 - 9,762,813 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01711,856,946 - 11,872,100 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41715,262,929 - 15,277,902 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11715,262,928 - 15,277,902 (-)NCBI
Celera179,297,383 - 9,312,355 (-)NCBICelera
RH 3.4 Map1781.4RGD
Cytogenetic Map17p14NCBI
Slc34a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540829,626,775 - 29,640,875 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540829,626,775 - 29,640,811 (+)NCBIChiLan1.0ChiLan1.0
SLC34A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24172,468,456 - 172,483,032 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15170,607,995 - 170,622,571 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05172,685,862 - 172,700,440 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15179,748,492 - 179,762,804 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5179,748,492 - 179,762,975 (+)Ensemblpanpan1.1panPan2
SLC34A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1435,961,394 - 35,973,733 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl435,961,958 - 35,973,657 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha435,928,819 - 35,941,165 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0436,327,621 - 36,339,965 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl436,328,185 - 36,339,882 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1436,152,845 - 36,165,191 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0436,339,065 - 36,351,380 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0436,848,297 - 36,860,641 (-)NCBIUU_Cfam_GSD_1.0
Slc34a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213122,642,609 - 122,659,626 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365971,667,569 - 1,684,539 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365971,667,700 - 1,684,533 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC34A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl280,548,232 - 80,563,321 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1280,548,208 - 80,563,380 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC34A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12379,395,923 - 79,410,835 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2379,396,250 - 79,411,695 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607510,585,375 - 10,600,418 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000015035   ⟹   ENSHGLP00000014887
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473312,685,546 - 12,699,901 (-)Ensembl
RefSeq Acc Id: XM_004836260   ⟹   XP_004836317
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473312,685,544 - 12,699,903 (-)NCBI
RefSeq Acc Id: XM_004836261   ⟹   XP_004836318
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473312,686,169 - 12,699,084 (-)NCBI
RefSeq Acc Id: XM_021238831   ⟹   XP_021094490
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473312,685,544 - 12,699,903 (-)NCBI
RefSeq Acc Id: XR_002387125
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473312,689,449 - 12,699,908 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004836317 (Get FASTA)   NCBI Sequence Viewer  
  XP_004836318 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094490 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014887
GenBank Protein JAO02458 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021094490   ⟸   XM_021238831
- Peptide Label: isoform X3
- UniProtKB: G5BQ07 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004836317   ⟸   XM_004836260
- Peptide Label: isoform X1
- UniProtKB: G5BQ07 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004836318   ⟸   XM_004836261
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JDJ1 (UniProtKB/TrEMBL),   G5BQ07 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000014887   ⟸   ENSHGLT00000015035


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010636 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015035 ENTREZGENE
InterPro Na/Pi_transpt UniProtKB/TrEMBL
NCBI Gene Slc34a1 ENTREZGENE
PANTHER PTHR10010 UniProtKB/TrEMBL
  PTHR10010:SF21 UniProtKB/TrEMBL
Pfam Na_Pi_cotrans UniProtKB/TrEMBL
UniProt A0A0P6JDJ1 ENTREZGENE, UniProtKB/TrEMBL
  G5BQ07 ENTREZGENE, UniProtKB/TrEMBL