Ino80d (INO80 complex subunit D) - Rat Genome Database

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Gene: Ino80d (INO80 complex subunit D) Heterocephalus glaber
Analyze
Symbol: Ino80d
Name: INO80 complex subunit D
RGD ID: 18923470
Description: INVOLVED IN chromatin remodeling (ortholog); positive regulation of DNA repair (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH megacolon (ortholog); Neurodevelopmental Disorders (ortholog); primary pulmonary hypertension (ortholog); FOUND IN Ino80 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476510,057,460 - 10,116,802 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476510,040,259 - 10,127,449 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Ino80 complex  (ISO)
nucleus  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Ino80d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476510,057,460 - 10,116,802 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476510,040,259 - 10,127,449 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
INO80D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382205,993,721 - 206,086,174 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2205,993,721 - 206,086,303 (-)EnsemblGRCh38hg38GRCh38
GRCh372206,858,445 - 206,950,898 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362206,566,690 - 206,659,151 (-)NCBINCBI36Build 36hg18NCBI36
Celera2200,615,842 - 200,708,300 (-)NCBICelera
Cytogenetic Map2q33.3NCBI
HuRef2198,706,439 - 198,799,527 (-)NCBIHuRef
CHM1_12206,864,927 - 206,957,389 (-)NCBICHM1_1
T2T-CHM13v2.02206,475,671 - 206,568,063 (-)NCBIT2T-CHM13v2.0
Ino80d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,086,960 - 63,153,693 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl162,997,577 - 63,153,849 (-)EnsemblGRCm39 Ensembl
GRCm38163,047,801 - 63,114,267 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl162,958,418 - 63,114,667 (-)EnsemblGRCm38mm10GRCm38
MGSCv37163,094,375 - 63,160,841 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36162,992,456 - 63,048,605 (-)NCBIMGSCv36mm8
Celera163,558,373 - 63,624,725 (-)NCBICelera
Cytogenetic Map1C2NCBI
cM Map131.89NCBI
Ino80d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8971,940,941 - 72,007,879 (-)NCBIGRCr8
mRatBN7.2964,447,075 - 64,514,013 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl964,457,165 - 64,515,242 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx972,960,222 - 72,998,099 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0978,081,486 - 78,118,813 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0976,387,605 - 76,425,033 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0969,820,520 - 69,887,475 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl969,830,424 - 69,878,706 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0969,629,390 - 69,696,566 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4961,708,910 - 61,746,437 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1961,855,901 - 61,912,107 (-)NCBI
Celera961,875,183 - 61,912,560 (-)NCBICelera
Cytogenetic Map9q32NCBI
Ino80d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554578,924,615 - 8,973,274 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554578,913,625 - 8,983,859 (+)NCBIChiLan1.0ChiLan1.0
INO80D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213108,607,545 - 108,699,850 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B108,622,527 - 108,714,783 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B93,233,672 - 93,325,871 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B211,363,367 - 211,433,124 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B211,373,993 - 211,433,124 (-)Ensemblpanpan1.1panPan2
INO80D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13714,581,531 - 14,647,930 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3714,591,055 - 14,647,936 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3715,458,402 - 15,525,801 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03714,517,057 - 14,584,513 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3714,524,733 - 14,584,303 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13714,471,292 - 14,538,679 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03714,443,555 - 14,510,914 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03714,438,424 - 14,505,831 (-)NCBIUU_Cfam_GSD_1.0
Ino80d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303162,771,091 - 162,839,734 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366312,410,300 - 2,474,811 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366312,405,056 - 2,474,798 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INO80D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15109,307,166 - 109,376,463 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115109,301,753 - 109,376,614 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215120,860,998 - 120,926,506 (-)NCBISscrofa10.2Sscrofa10.2susScr3
INO80D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11091,770,873 - 91,864,797 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1091,781,563 - 91,843,787 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040107,514,063 - 107,608,820 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026263   ⟹   ENSHGLP00000026033
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476510,057,460 - 10,116,802 (+)Ensembl
RefSeq Acc Id: XM_004851159   ⟹   XP_004851216
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476510,057,126 - 10,127,449 (+)NCBI
RefSeq Acc Id: XM_004851160   ⟹   XP_004851217
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476510,054,961 - 10,127,449 (+)NCBI
RefSeq Acc Id: XM_013074535   ⟹   XP_012929989
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476510,040,511 - 10,127,449 (+)NCBI
RefSeq Acc Id: XM_021263569   ⟹   XP_021119228
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476510,040,259 - 10,127,449 (+)NCBI
RefSeq Acc Id: XM_021263570   ⟹   XP_021119229
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476510,040,511 - 10,127,449 (+)NCBI
RefSeq Acc Id: XM_021263571   ⟹   XP_021119230
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476510,055,015 - 10,127,449 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021119228   ⟸   XM_021263569
- Peptide Label: isoform X1
- UniProtKB: G5C5L9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929989   ⟸   XM_013074535
- Peptide Label: isoform X1
- UniProtKB: G5C5L9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021119229   ⟸   XM_021263570
- Peptide Label: isoform X2
- UniProtKB: G5C5L9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004851217   ⟸   XM_004851160
- Peptide Label: isoform X1
- UniProtKB: G5C5L9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021119230   ⟸   XM_021263571
- Peptide Label: isoform X3
- UniProtKB: G5C5L9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004851216   ⟸   XM_004851159
- Peptide Label: isoform X1
- UniProtKB: G5C5L9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000026033   ⟸   ENSHGLT00000026263


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018537 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026263 ENTREZGENE
InterPro Potential_DNA-bd UniProtKB/TrEMBL
NCBI Gene Ino80d ENTREZGENE
PANTHER INO80 COMPLEX SUBUNIT D UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam zf-C3Hc3H UniProtKB/TrEMBL
UniProt G5C5L9 ENTREZGENE, UniProtKB/TrEMBL