Ino80d (INO80 complex subunit D) - Rat Genome Database

Name: Ino80d
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Ino80d (INO80 complex subunit D) Ictidomys tridecemlineatus

Analyze

Symbol:

Ino80d

Name:

INO80 complex subunit D

RGD ID:

12711808

Description:

INVOLVED IN chromatin remodeling (inferred); positive regulation of DNA repair (inferred); positive regulation of DNA-templated transcription (inferred); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH megacolon (ortholog); Neurodevelopmental Disorders (ortholog); primary pulmonary hypertension (ortholog); FOUND IN Ino80 complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

INO80 complex subunit D, transcript variant X1; INO80 complex subunit D, transcript variant X2; INO80 complex subunit D, transcript variant X3; INO80 complex subunit D, transcript variant X4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	162,771,091 - 162,839,734 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936631	2,410,300 - 2,474,811 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936631	2,405,056 - 2,474,798 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

megacolon (ISO)

Neurodevelopmental Disorders (ISO)

primary pulmonary hypertension (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IEA)

positive regulation of DNA repair (IEA)

positive regulation of DNA-templated transcription (IEA)

positive regulation of telomere maintenance in response to DNA damage (IEA)

regulation of cell cycle (IEA)

regulation of chromosome organization (IEA)

regulation of DNA repair (IEA)

regulation of DNA replication (IEA)

regulation of DNA strand elongation (IEA)

regulation of embryonic development (IEA)

telomere maintenance (IEA)

Cellular Component

Ino80 complex (IEA,ISO)

nucleus (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

INO80 family mediated chromatin remodeling pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Ino80d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	162,771,091 - 162,839,734 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936631	2,410,300 - 2,474,811 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936631	2,405,056 - 2,474,798 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

INO80D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	205,993,721 - 206,086,174 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	205,993,721 - 206,086,303 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	206,858,445 - 206,950,898 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	206,566,690 - 206,659,151 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	200,615,842 - 200,708,300 (-)	NCBI		Celera
Cytogenetic Map	2	q33.3	NCBI
HuRef	2	198,706,439 - 198,799,527 (-)	NCBI		HuRef
CHM1_1	2	206,864,927 - 206,957,389 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	206,475,671 - 206,568,063 (-)	NCBI		T2T-CHM13v2.0

Ino80d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	63,086,960 - 63,153,693 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	62,997,577 - 63,153,849 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	63,047,801 - 63,114,267 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	62,958,418 - 63,114,667 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	63,094,375 - 63,160,841 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	62,992,456 - 63,048,605 (-)	NCBI		MGSCv36	mm8
Celera	1	63,558,373 - 63,624,725 (-)	NCBI		Celera
Cytogenetic Map	1	C2	NCBI
cM Map	1	31.89	NCBI

Ino80d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	71,940,941 - 72,007,879 (-)	NCBI		GRCr8
mRatBN7.2	9	64,447,075 - 64,514,013 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	64,457,165 - 64,515,242 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	72,960,222 - 72,998,099 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	78,081,486 - 78,118,813 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	76,387,605 - 76,425,033 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	69,820,520 - 69,887,475 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	69,830,424 - 69,878,706 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	69,629,390 - 69,696,566 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	61,708,910 - 61,746,437 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	61,855,901 - 61,912,107 (-)	NCBI
Celera	9	61,875,183 - 61,912,560 (-)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI

Ino80d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	8,924,615 - 8,973,274 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955457	8,913,625 - 8,983,859 (+)	NCBI	ChiLan1.0	ChiLan1.0

INO80D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	108,607,545 - 108,699,850 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	108,622,527 - 108,714,783 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	93,233,672 - 93,325,871 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	211,363,367 - 211,433,124 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	211,373,993 - 211,433,124 (-)	Ensembl	panpan1.1		panPan2

INO80D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	14,581,531 - 14,647,930 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	14,591,055 - 14,647,936 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	15,458,402 - 15,525,801 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	14,517,057 - 14,584,513 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	14,524,733 - 14,584,303 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	14,471,292 - 14,538,679 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	14,443,555 - 14,510,914 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	14,438,424 - 14,505,831 (-)	NCBI		UU_Cfam_GSD_1.0

INO80D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	109,307,166 - 109,376,463 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	109,301,753 - 109,376,614 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	120,860,998 - 120,926,506 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

INO80D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	91,770,873 - 91,864,797 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	91,781,563 - 91,843,787 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	107,514,063 - 107,608,820 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ino80d
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624765	10,057,460 - 10,116,802 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624765	10,040,259 - 10,127,449 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013362785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021733118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021733119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021733120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000010243 ⟹ ENSSTOP00000009191

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936631	2,415,101 - 2,474,811 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000024042 ⟹ ENSSTOP00000020579

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936631	2,410,300 - 2,455,236 (-)	Ensembl

RefSeq Acc Id:

XM_021733118 ⟹ XP_021588793

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	162,780,320 - 162,839,734 (-)	NCBI
SpeTri2.0	NW_004936631	2,415,397 - 2,474,798 (-)	NCBI

Sequence:

show sequence

GCCTAGGAGTGGAGAATGGGCGCCGGCCCCCCTTCCCCCTGGGTGTCTCACAGACGCCCCCCGG
ATTCCGATGAGAGAATTTACCAGATTTGAGCCCCATCACTGATTCCTACCAGAGCCAATGAGTG
ATCTCTACTGCTGCATAAACTATCCTTACCTTTCTAATAAATCAGACAGTTTGCTTCATCTCGA
TTCAGCAGCGTTCCAAACTGTGGTATCCTTGGGGTTTTCTTAACATTGCTATGGTGCAGAAGAT
TTAAAATCAGCTGATGTTCACAAGGAATAGAGTCACGTGATGTATGAAGGGAAACATATACACT
TCTCTGAGGTTGACAATAAGCCCTTGTGCTCGTATAGCCCCAAACTGTGCAAGCAGCGGCGTCT
CAACGGCTACGCTTTCTGTATCAGACACGTTCTGGAGGACAAGACTGCCCCCTTCAAGCAATGT
GAATATGTGGCCAAGTACAACAGCCAGCGCTGCACCAACCCCATCCCCAAATCAGAGGATCGTA
GGTACTGCAACAGCCACTTGCAGGTACTTGGCTTTATCCCGAAAAAAGAGAGGAAGAAAAAGAA
TGATCCTATAGATGAGGTGAAAGTCAGGCACCAGATGGATACCATGGCCTTTAGCTTGACAGTG
CCCACGCTGGCCTTGAAGATGCCCAATGGACTGGATGGAATGTCCCTCTCTCCACCTGGGGCAA
GGGTCCCTCTCCACTACCTGGAAACTGAGTTGGAAGACCCATTTGCTTTCAACGAGGAAGATGA
TGATCTGAAGAAAGGGGCAACTGTGAGAAAGAAGTTGCAGAGCAAATTGGCCCAGAATCGGCAG
CGCCAGAGAGAGACAGAGATTTTAAAAGTTCGACAAGAGCACTTTAGTCCCCCTCCTGCACCTT
CCCAGCAGCAGCCTCCGCAGCAGCACTCCCAACTGTCACCTTTATCCACTTTAAAACCTCCAGC
GCCGCCGCAGGGTTCTGTCTGCAAGTCACCTCAACCTCAGAACACCAGCCTACCAATGCAGGGA
GTGGCCCCCACCACACACACTATAGCACAAGCAAGGCAGTTGTCTCACAAGAGGCCTCTGCCCT
TCCTGCCATCCAGTAGGGCTCCCGTCGTGGACCCCCCCAGGACTGACCGGGTCCTTATGAAAGC
CACAGCCTTCTCTCCACACTTCTCTTGTATAAGTCAGCTGCAGAGACTGGTGAAACTGTGCACA
CAAAAACATCAGTTGGATACTGATCTGTTTCCCCACTTAGGGTTGGACTGGTCTGAAGAAAGCG
GAGAGGAACTGGAGGACTCAGAACAGGCTTCACCATACCAGGTTGCATGGTCTATCCGAGAAAC
CCTCAGATACGAAAGACACACGCCAGATGACGATGATGCGGAGAGTAGGAGCTCCAGGGTGACC
CAACTTTGCACTTACTTTCAGCAGAAATATAAGCACCTCTGCCGCCTGGAAAGGGCAGAATCTC
GTCAAAAGAAATGCCGTCATACATTTAGGAAAGCATTGCTGCAGGCAGCCAGTAAAGAACCGGA
ATGTACTGGTCAGTTAATACAAGAACTTCGGAGAGCAGCATGCACTAGAACCAGTATAAGCCGG
ACCAAGTTGAGGGAGGTGGAACCAGCAGCATGCAGTGGAACCATGAAGGGGGAGCAGTGCACTA
ACAAAGCCCTTCCATTCACCAGACATTGTTTCCAACATATCCTCTTGAACCGCTCTCAGCAGCT
CTTCTCCAGTTGTACCGCCAAGTTTGCAGATGGACAGCAATGCTCTGTGCCAGTTTTTGACATT
ACACACCAGACACCTCTGTGTGAAGAACATGCCAAAAAAATGGATAATTTCTTGAGAGGAGATA
ACTCCCGTAAAGTTCAGCACCAGCAGCAGAGGAAACCCAGGAAAAAAACCAAGCCTCCTGCACT
TACCAAAAAACATAAGAAGAAGAGAAGGCGTGGACCTCGTCGACCCCAAAAGCCCATCCCCCCA
GCAGTCCCCCAAGGGAACCTCAGCATGCCCACCAGCGTCTCACTGCCAGTGGAGGCCTCTCAGA
TCCGGAGCCCATCCACGCCCGAGCTGAGTGCTGATGAGTTGCCGGATGACATTGCCAACGAGAT
CACCGACATTCCACATGATTTGGAATTGAACCAGGAGGACTTTTCAGACGTCCTGCCACGGTTA
CCTGATGACTTACAAGATTTTGATTTTTTTGAAGGAAAGAACGGAGACCTCCTCCCGACGACCG
AAGAGGCTGAGGAGCTTGAACGGGCCCTGCAGGCCGTAACTTCTCTCGAGTGCCTGAGTACCAT
TGGGGTACTTACCCAGTCAGACGGTGTACCAGTCCAGGAGTTGTCAGATAGAGGAATAGGGGTG
TTCTCCACAGGTACTGGAGCTTCAGGAATCCAGTCCTTGAGCCGAGAAGTAAACACGGATCTAG
GGGAGCTATTGAATGGGCGAATAGTACATGATAATTTTTCTAGTCTAGAGCTGGACGAGAACCT
ACTCCGTTCTGCTACCTTGTCTAACCCACCTACACCCCTGGCAGGGCAGATCCAGGGGCAGTTC
TCTGCCCCAGCCAACGTTGGCCTTACTTCTGCCACTCTGATCAGCCAGAGTGCACTTGGGGAGA
GAGCCTTCCCAGGACAGTTTCATGGACTTCATGATGGCAGCCATGCCTCCCAGAGGCCACATCC
TGCCCAGCTGCTGAGCAAGGCAGACGACCTAATCACCTCACGACAGCAATACAGCAGTGATCAT
TCACACTCCTCGCCCCATGGAAGCCATTATGATAGTGAGCACGTGCCGTCTCCCTACAGTGACC
ATATCACCTCTCCCCACACGACATCTTACTCTGGTGATAATATGGCAGCTACCTTTTCAGCAGA
GATGCCCATCATGGCGCAGCACTTGCTCCCAACCCAACTTGAGGTGCCACTTGGAGGAGTGGTA
AACCCTAGAACTCACTGGGGTAATCTCCCTGTCAACCTTGGAGATCCCTCTCCATTTAGCAACC
TTCTCGGCGCAGATGGACATCTTCTTTCCACTTCCCTATCCACGCCACCCACCACTTCGAACTC
AGAGACCACACAGCCTGCCTTCGCCACCGTGACCCCCAGCAGCTCCAGTGTGCTTCCGGGGTTA
CCGCAGACCAGCTTCAGTGGCATGGGGCCTTCTGCTGAACTAATGGCCTCCACCTCTCCCAAGC
AGCAACTCCCTCAGTTCAGCGCAGCCTTCGGCCACCAGCTGAGTTCTCACAGTGGCATTCCTAA
GGACCTGCAGCCCAGCCACAGCTCTATAGCCCCTCCTACAGGCTTCACAGTAACAGGTGCCACA
GCTACAAGTACCAATAATGCATCTTCTCCCTTTCCCTCCCCTAACTGAGCGTGTCTGTGTGTTT
GCAGGCAGGTGGGGAACCCGGTGTTTTCTATCTTTGTTTCCTCTTTAGCACCCCTTCCCCCTTT
TCCAAAAGAAGACTTAAAAATAGCAGATGGGAATTAGAGGGGCACCCCCTTCCCAGCTCAACAG
GTGGCCAGGCAGTGGACCTTGCTGCAGTGTTCACATGTGCTCCTTAGCACTGGTGCTCATTCCC
TCCTGGCAGGTCCACTCGGCCCCTGTGATTTCCTT

hide sequence

RefSeq Acc Id:

XM_021733119 ⟹ XP_021588794

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	162,780,320 - 162,839,545 (-)	NCBI
SpeTri2.0	NW_004936631	2,415,397 - 2,474,632 (-)	NCBI

Sequence:

show sequence

CGGTGAGAAGTCAGGTGCAGCCGCGGCCCGGAAAGTTTCCTTTTAGGCCCGAATTGGGGTCTGC
CCTCTCTTCGGGGAGCCCTGGACCTACCGCCCGGGACCCCCGGGGGCGTGGGGAGAGCACTCGG
CTATTTTGAAACTCTTTGCCAGTTCCTGTCCATTGAAGATGAGAGAATTTACCAGATTTGAGCC
CCATCACTGATTCCTACCAGAGCCAATGAGTGATCTCTACTGCTGCATAAACTATCCTTACCTT
TCTAATAAATCAGACAGTTTGCTTCATCTCGATTCAGCAGCGTTCCAAACTGTGGTATCCTTGG
GGTTTTCTTAACATTGCTATGGTGCAGAAGATTTAAAATCAGCTGATGTTCACAAGGAATAGAG
TCACGTGATGTATGAAGGGAAACATATACACTTCTCTGAGGTTGACAATAAGCCCTTGTGCTCG
TATAGCCCCAAACTGTGCAAGCAGCGGCGTCTCAACGGCTACGCTTTCTGTATCAGACACGTTC
TGGAGGACAAGACTGCCCCCTTCAAGCAATGTGAATATGTGGCCAAGTACAACAGCCAGCGCTG
CACCAACCCCATCCCCAAATCAGAGGATCGTAGGTACTGCAACAGCCACTTGCAGGTACTTGGC
TTTATCCCGAAAAAAGAGAGGAAGAAAAAGAATGATCCTATAGATGAGGTGAAAGTCAGGCACC
AGATGGATACCATGGCCTTTAGCTTGACAGTGCCCACGCTGGCCTTGAAGATGCCCAATGGACT
GGATGGAATGTCCCTCTCTCCACCTGGGGCAAGGGTCCCTCTCCACTACCTGGAAACTGAGTTG
GAAGACCCATTTGCTTTCAACGAGGAAGATGATGATCTGAAGAAAGGGGCAACTGTGAGAAAGA
AGTTGCAGAGCAAATTGGCCCAGAATCGGCAGCGCCAGAGAGAGACAGAGATTTTAAAAGTTCG
ACAAGAGCACTTTAGTCCCCCTCCTGCACCTTCCCAGCAGCAGCCTCCGCAGCAGCACTCCCAA
CTGTCACCTTTATCCACTTTAAAACCTCCAGCGCCGCCGCAGGGTTCTGTCTGCAAGTCACCTC
AACCTCAGAACACCAGCCTACCAATGCAGGGAGTGGCCCCCACCACACACACTATAGCACAAGC
AAGGCAGTTGTCTCACAAGAGGCCTCTGCCCTTCCTGCCATCCAGTAGGGCTCCCGTCGTGGAC
CCCCCCAGGACTGACCGGGTCCTTATGAAAGCCACAGCCTTCTCTCCACACTTCTCTTGTATAA
GTCAGCTGCAGAGACTGGTGAAACTGTGCACACAAAAACATCAGTTGGATACTGATCTGTTTCC
CCACTTAGGGTTGGACTGGTCTGAAGAAAGCGGAGAGGAACTGGAGGACTCAGAACAGGCTTCA
CCATACCAGGTTGCATGGTCTATCCGAGAAACCCTCAGATACGAAAGACACACGCCAGATGACG
ATGATGCGGAGAGTAGGAGCTCCAGGGTGACCCAACTTTGCACTTACTTTCAGCAGAAATATAA
GCACCTCTGCCGCCTGGAAAGGGCAGAATCTCGTCAAAAGAAATGCCGTCATACATTTAGGAAA
GCATTGCTGCAGGCAGCCAGTAAAGAACCGGAATGTACTGGTCAGTTAATACAAGAACTTCGGA
GAGCAGCATGCACTAGAACCAGTATAAGCCGGACCAAGTTGAGGGAGGTGGAACCAGCAGCATG
CAGTGGAACCATGAAGGGGGAGCAGTGCACTAACAAAGCCCTTCCATTCACCAGACATTGTTTC
CAACATATCCTCTTGAACCGCTCTCAGCAGCTCTTCTCCAGTTGTACCGCCAAGTTTGCAGATG
GACAGCAATGCTCTGTGCCAGTTTTTGACATTACACACCAGACACCTCTGTGTGAAGAACATGC
CAAAAAAATGGATAATTTCTTGAGAGGAGATAACTCCCGTAAAGTTCAGCACCAGCAGCAGAGG
AAACCCAGGAAAAAAACCAAGCCTCCTGCACTTACCAAAAAACATAAGAAGAAGAGAAGGCGTG
GACCTCGTCGACCCCAAAAGCCCATCCCCCCAGCAGTCCCCCAAGGGAACCTCAGCATGCCCAC
CAGCGTCTCACTGCCAGTGGAGGCCTCTCAGATCCGGAGCCCATCCACGCCCGAGCTGAGTGCT
GATGAGTTGCCGGATGACATTGCCAACGAGATCACCGACATTCCACATGATTTGGAATTGAACC
AGGAGGACTTTTCAGACGTCCTGCCACGGTTACCTGATGACTTACAAGATTTTGATTTTTTTGA
AGGAAAGAACGGAGACCTCCTCCCGACGACCGAAGAGGCTGAGGAGCTTGAACGGGCCCTGCAG
GCCGTAACTTCTCTCGAGTGCCTGAGTACCATTGGGGTACTTACCCAGTCAGACGGTGTACCAG
TCCAGGAGTTGTCAGATAGAGGAATAGGGGTGTTCTCCACAGGTACTGGAGCTTCAGGAATCCA
GTCCTTGAGCCGAGAAGTAAACACGGATCTAGGGGAGCTATTGAATGGGCGAATAGTACATGAT
AATTTTTCTAGTCTAGAGCTGGACGAGAACCTACTCCGTTCTGCTACCTTGTCTAACCCACCTA
CACCCCTGGCAGGGCAGATCCAGGGGCAGTTCTCTGCCCCAGCCAACGTTGGCCTTACTTCTGC
CACTCTGATCAGCCAGAGTGCACTTGGGGAGAGAGCCTTCCCAGGACAGTTTCATGGACTTCAT
GATGGCAGCCATGCCTCCCAGAGGCCACATCCTGCCCAGCTGCTGAGCAAGGCAGACGACCTAA
TCACCTCACGACAGCAATACAGCAGTGATCATTCACACTCCTCGCCCCATGGAAGCCATTATGA
TAGTGAGCACGTGCCGTCTCCCTACAGTGACCATATCACCTCTCCCCACACGACATCTTACTCT
GGTGATAATATGGCAGCTACCTTTTCAGCAGAGATGCCCATCATGGCGCAGCACTTGCTCCCAA
CCCAACTTGAGGTGCCACTTGGAGGAGTGGTAAACCCTAGAACTCACTGGGGTAATCTCCCTGT
CAACCTTGGAGATCCCTCTCCATTTAGCAACCTTCTCGGCGCAGATGGACATCTTCTTTCCACT
TCCCTATCCACGCCACCCACCACTTCGAACTCAGAGACCACACAGCCTGCCTTCGCCACCGTGA
CCCCCAGCAGCTCCAGTGTGCTTCCGGGGTTACCGCAGACCAGCTTCAGTGGCATGGGGCCTTC
TGCTGAACTAATGGCCTCCACCTCTCCCAAGCAGCAACTCCCTCAGTTCAGCGCAGCCTTCGGC
CACCAGCTGAGTTCTCACAGTGGCATTCCTAAGGACCTGCAGCCCAGCCACAGCTCTATAGCCC
CTCCTACAGGCTTCACAGTAACAGGTGCCACAGCTACAAGTACCAATAATGCATCTTCTCCCTT
TCCCTCCCCTAACTGAGCGTGTCTGTGTGTTTGCAGGCAGGTGGGGAACCCGGTGTTTTCTATC
TTTGTTTCCTCTTTAGCACCCCTTCCCCCTTTTCCAAAAGAAGACTTAAAAATAGCAGATGGGA
ATTAGAGGGGCACCCCCTTCCCAGCTCAACAGGTGGCCAGGCAGTGGACCTTGCTGCAGTGTTC
ACATGTGCTCCTTAGCACTGGTGCTCATTCCCTCCTGGCAGGTCCACTCGGCCCCTGTGATTTC
CTT

hide sequence

RefSeq Acc Id:

XM_040294781 ⟹ XP_040150715

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	162,776,443 - 162,839,734 (-)	NCBI

RefSeq Acc Id:

XM_040294782 ⟹ XP_040150716

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	162,780,320 - 162,839,545 (-)	NCBI

RefSeq Acc Id:

XM_040294783 ⟹ XP_040150717

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	162,780,320 - 162,839,666 (-)	NCBI

RefSeq Acc Id:

XM_040294784 ⟹ XP_040150718

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	162,780,320 - 162,838,279 (-)	NCBI

RefSeq Acc Id:

XM_040294785 ⟹ XP_040150719

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	162,771,091 - 162,839,734 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_021588793	(Get FASTA)	NCBI Sequence Viewer
	XP_021588794	(Get FASTA)	NCBI Sequence Viewer
	XP_040150715	(Get FASTA)	NCBI Sequence Viewer
	XP_040150716	(Get FASTA)	NCBI Sequence Viewer
	XP_040150717	(Get FASTA)	NCBI Sequence Viewer
	XP_040150718	(Get FASTA)	NCBI Sequence Viewer
	XP_040150719	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009191.3
	ENSSTOP00000020579.2
GenBank Protein	KAG3275061	(Get FASTA)	NCBI Sequence Viewer
	KAG3275062	(Get FASTA)	NCBI Sequence Viewer
	KAG3275063	(Get FASTA)	NCBI Sequence Viewer
	KAG3275064	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021588793 ⟸ XM_021733118
- Peptide Label:	isoform X1
- UniProtKB:	I3MF42 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYEGKHIHFSEVDNKPLCSYSPKLCKQRRLNGYAFCIRHVLEDKTAPFKQCEYVAKYNSQRCTN PIPKSEDRRYCNSHLQVLGFIPKKERKKKNDPIDEVKVRHQMDTMAFSLTVPTLALKMPNGLDG MSLSPPGARVPLHYLETELEDPFAFNEEDDDLKKGATVRKKLQSKLAQNRQRQRETEILKVRQE HFSPPPAPSQQQPPQQHSQLSPLSTLKPPAPPQGSVCKSPQPQNTSLPMQGVAPTTHTIAQARQ LSHKRPLPFLPSSRAPVVDPPRTDRVLMKATAFSPHFSCISQLQRLVKLCTQKHQLDTDLFPHL GLDWSEESGEELEDSEQASPYQVAWSIRETLRYERHTPDDDDAESRSSRVTQLCTYFQQKYKHL CRLERAESRQKKCRHTFRKALLQAASKEPECTGQLIQELRRAACTRTSISRTKLREVEPAACSG TMKGEQCTNKALPFTRHCFQHILLNRSQQLFSSCTAKFADGQQCSVPVFDITHQTPLCEEHAKK MDNFLRGDNSRKVQHQQQRKPRKKTKPPALTKKHKKKRRRGPRRPQKPIPPAVPQGNLSMPTSV SLPVEASQIRSPSTPELSADELPDDIANEITDIPHDLELNQEDFSDVLPRLPDDLQDFDFFEGK NGDLLPTTEEAEELERALQAVTSLECLSTIGVLTQSDGVPVQELSDRGIGVFSTGTGASGIQSL SREVNTDLGELLNGRIVHDNFSSLELDENLLRSATLSNPPTPLAGQIQGQFSAPANVGLTSATL ISQSALGERAFPGQFHGLHDGSHASQRPHPAQLLSKADDLITSRQQYSSDHSHSSPHGSHYDSE HVPSPYSDHITSPHTTSYSGDNMAATFSAEMPIMAQHLLPTQLEVPLGGVVNPRTHWGNLPVNL GDPSPFSNLLGADGHLLSTSLSTPPTTSNSETTQPAFATVTPSSSSVLPGLPQTSFSGMGPSAE LMASTSPKQQLPQFSAAFGHQLSSHSGIPKDLQPSHSSIAPPTGFTVTGATATSTNNASSPFPS PN hide sequence

RefSeq Acc Id:	XP_021588794 ⟸ XM_021733119
- Peptide Label:	isoform X1
- UniProtKB:	I3MF42 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYEGKHIHFSEVDNKPLCSYSPKLCKQRRLNGYAFCIRHVLEDKTAPFKQCEYVAKYNSQRCTN PIPKSEDRRYCNSHLQVLGFIPKKERKKKNDPIDEVKVRHQMDTMAFSLTVPTLALKMPNGLDG MSLSPPGARVPLHYLETELEDPFAFNEEDDDLKKGATVRKKLQSKLAQNRQRQRETEILKVRQE HFSPPPAPSQQQPPQQHSQLSPLSTLKPPAPPQGSVCKSPQPQNTSLPMQGVAPTTHTIAQARQ LSHKRPLPFLPSSRAPVVDPPRTDRVLMKATAFSPHFSCISQLQRLVKLCTQKHQLDTDLFPHL GLDWSEESGEELEDSEQASPYQVAWSIRETLRYERHTPDDDDAESRSSRVTQLCTYFQQKYKHL CRLERAESRQKKCRHTFRKALLQAASKEPECTGQLIQELRRAACTRTSISRTKLREVEPAACSG TMKGEQCTNKALPFTRHCFQHILLNRSQQLFSSCTAKFADGQQCSVPVFDITHQTPLCEEHAKK MDNFLRGDNSRKVQHQQQRKPRKKTKPPALTKKHKKKRRRGPRRPQKPIPPAVPQGNLSMPTSV SLPVEASQIRSPSTPELSADELPDDIANEITDIPHDLELNQEDFSDVLPRLPDDLQDFDFFEGK NGDLLPTTEEAEELERALQAVTSLECLSTIGVLTQSDGVPVQELSDRGIGVFSTGTGASGIQSL SREVNTDLGELLNGRIVHDNFSSLELDENLLRSATLSNPPTPLAGQIQGQFSAPANVGLTSATL ISQSALGERAFPGQFHGLHDGSHASQRPHPAQLLSKADDLITSRQQYSSDHSHSSPHGSHYDSE HVPSPYSDHITSPHTTSYSGDNMAATFSAEMPIMAQHLLPTQLEVPLGGVVNPRTHWGNLPVNL GDPSPFSNLLGADGHLLSTSLSTPPTTSNSETTQPAFATVTPSSSSVLPGLPQTSFSGMGPSAE LMASTSPKQQLPQFSAAFGHQLSSHSGIPKDLQPSHSSIAPPTGFTVTGATATSTNNASSPFPS PN hide sequence

RefSeq Acc Id:	XP_040150719 ⟸ XM_040294785
- Peptide Label:	isoform X2
- UniProtKB:	I3N883 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040150715 ⟸ XM_040294781
- Peptide Label:	isoform X1
- UniProtKB:	I3MF42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040150717 ⟸ XM_040294783
- Peptide Label:	isoform X1
- UniProtKB:	I3MF42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040150716 ⟸ XM_040294782
- Peptide Label:	isoform X1
- UniProtKB:	I3MF42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040150718 ⟸ XM_040294784
- Peptide Label:	isoform X1
- UniProtKB:	I3MF42 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000009191 ⟸ ENSSTOT00000010243

RefSeq Acc Id:

ENSSTOP00000020579 ⟸ ENSSTOT00000024042

Protein Domains

Potential DNA-binding

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000028419	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010243.3	UniProtKB/TrEMBL
	ENSSTOT00000024042.2	UniProtKB/TrEMBL
InterPro	Potential_DNA-bd	UniProtKB/TrEMBL
NCBI Gene	Ino80d	ENTREZGENE
PANTHER	INO80 COMPLEX SUBUNIT D	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	zf-C3Hc3H	UniProtKB/TrEMBL
UniProt	I3MF42	ENTREZGENE, UniProtKB/TrEMBL
	I3N883	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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