Kif3c (kinesin family member 3C) - Rat Genome Database

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Gene: Kif3c (kinesin family member 3C) Heterocephalus glaber
Analyze
Symbol: Kif3c
Name: kinesin family member 3C
RGD ID: 18915391
Description: ENCODES a protein that exhibits kinesin binding (ortholog); microtubule binding (ortholog); INVOLVED IN positive regulation of neuron projection development (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); atrial fibrillation (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); growth cone (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kinesin-like protein KIF3C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247388,127,797 - 8,171,697 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247388,128,594 - 8,171,638 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kif3c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247388,127,797 - 8,171,697 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247388,128,594 - 8,171,638 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KIF3C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38225,926,598 - 25,982,497 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl225,926,598 - 25,982,749 (-)EnsemblGRCh38hg38GRCh38
GRCh37226,149,467 - 26,205,366 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36226,002,959 - 26,058,947 (-)NCBINCBI36Build 36hg18NCBI36
Build 34226,061,118 - 26,117,054NCBI
Celera225,989,739 - 26,045,730 (-)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef225,886,207 - 25,942,013 (-)NCBIHuRef
CHM1_1226,079,044 - 26,135,487 (-)NCBICHM1_1
T2T-CHM13v2.0225,961,945 - 26,017,861 (-)NCBIT2T-CHM13v2.0
Kif3c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39123,415,132 - 3,456,494 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl123,415,132 - 3,456,494 (+)EnsemblGRCm39 Ensembl
GRCm38123,365,132 - 3,406,494 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl123,365,132 - 3,406,494 (+)EnsemblGRCm38mm10GRCm38
MGSCv37123,365,132 - 3,406,494 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36123,365,132 - 3,406,494 (+)NCBIMGSCv36mm8
Celera123,292,187 - 3,333,551 (+)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map121.77NCBI
Kif3c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8632,086,879 - 32,125,812 (+)NCBIGRCr8
mRatBN7.2626,367,092 - 26,406,033 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl626,366,531 - 26,406,130 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx626,659,683 - 26,698,621 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,975,571 - 27,014,501 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0626,453,926 - 26,492,858 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0627,768,943 - 27,815,611 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,768,943 - 27,815,611 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0637,579,445 - 37,625,883 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4626,342,388 - 26,381,233 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1626,345,340 - 26,384,186 (+)NCBI
Celera625,843,783 - 25,882,712 (+)NCBICelera
Cytogenetic Map6q14NCBI
Kif3c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554697,958,481 - 8,001,738 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554697,960,224 - 8,001,161 (-)NCBIChiLan1.0ChiLan1.0
KIF3C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212100,536,872 - 100,591,788 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A100,540,100 - 100,595,754 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A25,927,039 - 25,982,715 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A26,020,025 - 26,074,961 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A26,020,025 - 26,074,961 (-)Ensemblpanpan1.1panPan2
KIF3C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11720,090,374 - 20,128,703 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1720,091,759 - 20,128,562 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1719,986,149 - 20,024,501 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01720,411,768 - 20,450,554 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1720,411,774 - 20,451,095 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11720,098,664 - 20,136,938 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01720,109,348 - 20,147,627 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01720,155,378 - 20,193,906 (-)NCBIUU_Cfam_GSD_1.0
Kif3c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629264,402,587 - 64,442,970 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364936,396,276 - 6,435,266 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364936,396,606 - 6,435,266 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF3C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,966,804 - 113,014,624 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13112,963,424 - 113,014,632 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,943,241 - 119,968,158 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KIF3C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11481,666,884 - 81,717,489 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1481,666,793 - 81,717,508 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604530,438,707 - 30,491,806 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000025950   ⟹   ENSHGLP00000025722
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247388,127,797 - 8,171,697 (-)Ensembl
RefSeq Acc Id: XM_004839124   ⟹   XP_004839181
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247388,128,594 - 8,171,638 (-)NCBI
RefSeq Acc Id: XM_004839125   ⟹   XP_004839182
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247388,128,594 - 8,171,638 (-)NCBI
RefSeq Acc Id: XR_002392812
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247388,128,594 - 8,171,638 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004839181 (Get FASTA)   NCBI Sequence Viewer  
  XP_004839182 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025722
Reference Protein Sequences
RefSeq Acc Id: XP_004839181   ⟸   XM_004839124
- Peptide Label: isoform X1
- UniProtKB: G5CBL0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004839182   ⟸   XM_004839125
- Peptide Label: isoform X2
- UniProtKB: G5CBL0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000025722   ⟸   ENSHGLT00000025950


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018310 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000025950 ENTREZGENE
Gene3D-CATH Kinesin motor domain UniProtKB/TrEMBL
InterPro Kinesin-like_fam UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Kif3c ENTREZGENE
PANTHER CENTROMERE PROTEIN E UniProtKB/TrEMBL
  KINESIN-LIKE PROTEIN UniProtKB/TrEMBL
Pfam Kinesin UniProtKB/TrEMBL
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_1 UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/TrEMBL
SMART KISc UniProtKB/TrEMBL
Superfamily-SCOP P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL
UniProt G5CBL0 ENTREZGENE, UniProtKB/TrEMBL