Erc2 (ELKS/RAB6-interacting/CAST family member 2) - Rat Genome Database

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Gene: Erc2 (ELKS/RAB6-interacting/CAST family member 2) Heterocephalus glaber
Analyze
Symbol: Erc2
Name: ELKS/RAB6-interacting/CAST family member 2
RGD ID: 18915204
Description: ENCODES a protein that exhibits PDZ domain binding (ortholog); protein-containing complex binding (ortholog); structural constituent of presynaptic active zone (ortholog); INVOLVED IN maintenance of presynaptic active zone structure (ortholog); regulation of calcium-dependent activation of synaptic vesicle fusion (ortholog); regulation of presynaptic cytosolic calcium ion concentration (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); Golgi-associated vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ERC protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624822756,550 - 1,807,175 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624822756,532 - 1,806,129 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Erc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624822756,550 - 1,807,175 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624822756,532 - 1,806,129 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ERC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38355,508,311 - 56,468,467 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl355,508,311 - 56,469,095 (-)EnsemblGRCh38hg38GRCh38
GRCh37355,542,339 - 56,502,495 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36355,517,376 - 56,477,431 (-)NCBINCBI36Build 36hg18NCBI36
Celera355,509,269 - 56,468,649 (-)NCBICelera
Cytogenetic Map3p14.3NCBI
HuRef355,591,133 - 56,551,243 (-)NCBIHuRef
CHM1_1355,493,671 - 56,453,566 (-)NCBICHM1_1
T2T-CHM13v2.0355,542,510 - 56,508,891 (-)NCBIT2T-CHM13v2.0
Erc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391427,344,232 - 28,200,494 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1427,344,385 - 28,200,494 (+)EnsemblGRCm39 Ensembl
GRCm381427,622,275 - 28,478,537 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1427,622,428 - 28,478,537 (+)EnsemblGRCm38mm10GRCm38
MGSCv371428,435,628 - 29,291,723 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361426,449,326 - 27,305,403 (+)NCBIMGSCv36mm8
Celera1423,854,528 - 24,727,160 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1416.51NCBI
Erc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8162,819,399 - 3,680,258 (+)NCBIGRCr8
mRatBN7.2162,812,712 - 3,673,624 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl162,848,620 - 3,670,776 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx162,819,340 - 3,680,212 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0163,965,020 - 4,825,629 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0162,824,168 - 3,685,138 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0163,258,580 - 4,283,592 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl163,293,599 - 3,679,222 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,260,419 - 4,388,774 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4162,932,781 - 3,596,299 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1162,932,780 - 3,596,297 (+)NCBI
Celera162,811,369 - 3,459,316 (+)NCBICelera
Cytogenetic Map16p16NCBI
Erc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554305,513,662 - 6,308,882 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554305,345,191 - 6,308,909 (-)NCBIChiLan1.0ChiLan1.0
ERC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2255,491,457 - 56,468,006 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1355,496,228 - 56,472,777 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0355,438,875 - 56,417,072 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1356,659,377 - 57,599,384 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl356,836,941 - 57,599,248 (-)Ensemblpanpan1.1panPan2
ERC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12033,842,753 - 34,748,038 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2033,842,753 - 34,746,491 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2033,769,262 - 34,672,553 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02034,114,565 - 35,020,292 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2034,114,216 - 35,020,299 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12033,558,663 - 34,463,362 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02033,918,155 - 34,823,551 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02034,092,812 - 35,039,347 (+)NCBIUU_Cfam_GSD_1.0
Erc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118172,937,212 - 173,811,690 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364736,075,769 - 6,950,263 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364736,075,811 - 6,532,671 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1337,388,517 - 38,367,504 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11337,388,513 - 38,367,512 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21341,281,049 - 41,624,117 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ERC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12216,851,862 - 17,817,504 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2217,034,445 - 17,817,522 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041149,054,724 - 150,028,608 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004864323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004864324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004864325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013065427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013065430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021244028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021244029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021244030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021244031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021244032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021244033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021244034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021244036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002389208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002389209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002389210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002389211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01081056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01081086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000005197   ⟹   ENSHGLP00000005130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624822756,550 - 1,807,175 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000005198   ⟹   ENSHGLP00000005131
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624822756,550 - 1,705,113 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000005199   ⟹   ENSHGLP00000005132
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624822756,550 - 1,654,280 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000005200   ⟹   ENSHGLP00000005133
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624822756,550 - 1,633,334 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000005201   ⟹   ENSHGLP00000005134
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624822756,550 - 1,623,743 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000005202   ⟹   ENSHGLP00000005135
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624822756,550 - 1,622,404 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000005203   ⟹   ENSHGLP00000005136
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624822785,799 - 1,633,334 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000005204   ⟹   ENSHGLP00000005137
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248221,112,573 - 1,633,334 (+)Ensembl
RefSeq Acc Id: XM_004864323   ⟹   XP_004864380
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,533 - 1,806,129 (+)NCBI
RefSeq Acc Id: XM_004864324   ⟹   XP_004864381
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,533 - 1,806,129 (+)NCBI
RefSeq Acc Id: XM_004864325   ⟹   XP_004864382
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,533 - 1,806,129 (+)NCBI
RefSeq Acc Id: XM_013065427   ⟹   XP_012920881
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,532 - 1,806,129 (+)NCBI
RefSeq Acc Id: XM_013065430   ⟹   XP_012920884
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,533 - 1,806,129 (+)NCBI
RefSeq Acc Id: XM_021244028   ⟹   XP_021099687
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,532 - 1,806,129 (+)NCBI
RefSeq Acc Id: XM_021244029   ⟹   XP_021099688
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,532 - 1,806,129 (+)NCBI
RefSeq Acc Id: XM_021244030   ⟹   XP_021099689
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,532 - 1,806,129 (+)NCBI
RefSeq Acc Id: XM_021244031   ⟹   XP_021099690
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,532 - 1,806,129 (+)NCBI
RefSeq Acc Id: XM_021244032   ⟹   XP_021099691
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,533 - 1,806,129 (+)NCBI
RefSeq Acc Id: XM_021244033   ⟹   XP_021099692
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,533 - 1,806,129 (+)NCBI
RefSeq Acc Id: XM_021244034   ⟹   XP_021099693
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,533 - 1,806,129 (+)NCBI
RefSeq Acc Id: XM_021244036   ⟹   XP_021099695
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,532 - 1,803,354 (+)NCBI
RefSeq Acc Id: XR_002389208
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,532 - 1,803,378 (+)NCBI
RefSeq Acc Id: XR_002389209
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,532 - 1,803,330 (+)NCBI
RefSeq Acc Id: XR_002389210
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,532 - 1,803,330 (+)NCBI
RefSeq Acc Id: XR_002389211
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624822756,533 - 1,803,330 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021099687   ⟸   XM_021244028
- Peptide Label: isoform X1
RefSeq Acc Id: XP_012920881   ⟸   XM_013065427
- Peptide Label: isoform X8
RefSeq Acc Id: XP_021099688   ⟸   XM_021244029
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021099690   ⟸   XM_021244031
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021099689   ⟸   XM_021244030
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021099695   ⟸   XM_021244036
- Peptide Label: isoform X13
RefSeq Acc Id: XP_012920884   ⟸   XM_013065430
- Peptide Label: isoform X9
RefSeq Acc Id: XP_021099691   ⟸   XM_021244032
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021099692   ⟸   XM_021244033
- Peptide Label: isoform X6
RefSeq Acc Id: XP_004864380   ⟸   XM_004864323
- Peptide Label: isoform X10
RefSeq Acc Id: XP_004864381   ⟸   XM_004864324
- Peptide Label: isoform X11
RefSeq Acc Id: XP_021099693   ⟸   XM_021244034
- Peptide Label: isoform X7
RefSeq Acc Id: XP_004864382   ⟸   XM_004864325
- Peptide Label: isoform X12
RefSeq Acc Id: ENSHGLP00000005134   ⟸   ENSHGLT00000005201
RefSeq Acc Id: ENSHGLP00000005133   ⟸   ENSHGLT00000005200
RefSeq Acc Id: ENSHGLP00000005137   ⟸   ENSHGLT00000005204
RefSeq Acc Id: ENSHGLP00000005132   ⟸   ENSHGLT00000005199
RefSeq Acc Id: ENSHGLP00000005136   ⟸   ENSHGLT00000005203
RefSeq Acc Id: ENSHGLP00000005135   ⟸   ENSHGLT00000005202
RefSeq Acc Id: ENSHGLP00000005131   ⟸   ENSHGLT00000005198
RefSeq Acc Id: ENSHGLP00000005130   ⟸   ENSHGLT00000005197


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003759 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000005197 ENTREZGENE
  ENSHGLT00000005203 ENTREZGENE
NCBI Gene Erc2 ENTREZGENE