Msantd1 (Myb/SANT DNA binding domain containing 1) - Rat Genome Database

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Gene: Msantd1 (Myb/SANT DNA binding domain containing 1) Heterocephalus glaber
Analyze
Symbol: Msantd1
Name: Myb/SANT DNA binding domain containing 1
RGD ID: 18913644
Description: ENCODES a protein that exhibits DNA binding (inferred); INVOLVED IN positive regulation of DNA-templated transcription (inferred); ASSOCIATED WITH cherubism (ortholog); Ellis-Van Creveld syndrome (ortholog); FOUND IN nuclear body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myb/SANT-like DNA-binding domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475524,590,334 - 24,597,869 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475524,590,378 - 24,602,806 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear body  (IEA)

Molecular Function
DNA binding  (IEA)

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Msantd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475524,590,334 - 24,597,869 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475524,590,378 - 24,602,806 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MSANTD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3843,244,273 - 3,256,613 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl43,244,369 - 3,271,738 (+)EnsemblGRCh38hg38GRCh38
GRCh3743,246,096 - 3,258,340 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3643,220,565 - 3,235,638 (+)NCBINCBI36Build 36hg18NCBI36
Celera43,162,291 - 3,169,866 (+)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef43,189,248 - 3,196,823 (+)NCBIHuRef
CHM1_143,248,522 - 3,256,097 (+)NCBICHM1_1
T2T-CHM13v2.043,243,031 - 3,255,371 (+)NCBIT2T-CHM13v2.0
Msantd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39535,071,581 - 35,084,333 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl535,065,356 - 35,081,183 (+)EnsemblGRCm39 Ensembl
GRCm38534,914,593 - 34,926,989 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl534,908,012 - 34,923,839 (+)EnsemblGRCm38mm10GRCm38
MGSCv37535,258,564 - 35,266,488 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36535,232,772 - 35,240,696 (+)NCBIMGSCv36mm8
Celera532,389,812 - 32,397,737 (+)NCBICelera
Cytogenetic Map5B2NCBI
cM Map517.94NCBI
Msantd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81480,059,985 - 80,070,336 (-)NCBIGRCr8
mRatBN7.21475,832,368 - 75,845,687 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1475,835,380 - 75,844,183 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1480,288,354 - 80,294,546 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01481,529,009 - 81,535,201 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01477,974,245 - 77,980,437 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01481,091,675 - 81,105,065 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1481,090,858 - 81,100,803 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01481,780,150 - 81,793,570 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41481,476,972 - 81,483,164 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1474,761,454 - 74,767,646 (-)NCBICelera
Cytogenetic Map14q21NCBI
Msantd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555142,037,891 - 2,053,746 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555142,037,891 - 2,053,746 (+)NCBIChiLan1.0ChiLan1.0
MSANTD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v233,587,575 - 3,615,269 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan143,520,980 - 3,548,660 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v043,393,646 - 3,408,820 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.143,292,754 - 3,307,786 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl43,290,354 - 3,305,139 (+)Ensemblpanpan1.1panPan2
MSANTD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1361,058,993 - 61,076,816 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl361,064,335 - 61,075,072 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha363,642,759 - 63,665,797 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0361,534,630 - 61,557,671 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl361,536,790 - 61,550,600 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1361,026,239 - 61,049,273 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0361,230,547 - 61,253,592 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0361,596,177 - 61,613,334 (-)NCBIUU_Cfam_GSD_1.0
Msantd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528566,730,271 - 66,741,262 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647720,431,861 - 20,440,848 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647720,431,866 - 20,438,330 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MSANTD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl81,938,397 - 1,947,985 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.181,934,960 - 1,944,754 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.281,590,769 - 1,596,940 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MSANTD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12745,480,897 - 45,490,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2745,480,545 - 45,491,188 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660511,839,654 - 1,852,085 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000021319   ⟹   ENSHGLP00000021116
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475524,590,334 - 24,595,908 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000021320   ⟹   ENSHGLP00000021117
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475524,590,501 - 24,597,869 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000021321   ⟹   ENSHGLP00000021118
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475524,590,501 - 24,595,765 (-)Ensembl
RefSeq Acc Id: XM_004847366   ⟹   XP_004847423
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475524,590,378 - 24,602,806 (-)NCBI
RefSeq Acc Id: XM_021260370   ⟹   XP_021116029
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475524,590,378 - 24,596,394 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004847423 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116029 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB14664 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000021118
GenBank Protein JAN99795 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004847423   ⟸   XM_004847366
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021116029   ⟸   XM_021260370
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000021116   ⟸   ENSHGLT00000021319
RefSeq Acc Id: ENSHGLP00000021118   ⟸   ENSHGLT00000021321
RefSeq Acc Id: ENSHGLP00000021117   ⟸   ENSHGLT00000021320


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015087 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021321 ENTREZGENE
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Myb/SANT-like_DNA-bd_dom_prot UniProtKB/TrEMBL
  Myb_DNA-bind_4 UniProtKB/TrEMBL
KEGG Report hgl:101726748 UniProtKB/TrEMBL
NCBI Gene Msantd1 ENTREZGENE
PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR22666 UniProtKB/TrEMBL
Pfam Myb_DNA-bind_4 UniProtKB/TrEMBL
UniProt A0A0P6J6D2_HETGA UniProtKB/TrEMBL