MSANTD1 (Myb/SANT DNA binding domain containing 1)

Gene: MSANTD1 (Myb/SANT DNA binding domain containing 1) Sus scrofa

Analyze

Symbol:

MSANTD1

Name:

Myb/SANT DNA binding domain containing 1

RGD ID:

14037428

Description:

ASSOCIATED WITH cherubism (ortholog); Ellis-Van Creveld syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

myb/SANT-like DNA-binding domain-containing protein 1; uncharacterized protein C4orf44 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	1,938,397 - 1,947,985 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	1,934,960 - 1,944,754 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	1,590,769 - 1,596,940 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cherubism (ISO)

Ellis-Van Creveld syndrome (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

MSANTD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	1,938,397 - 1,947,985 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	1,934,960 - 1,944,754 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	1,590,769 - 1,596,940 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MSANTD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	3,244,273 - 3,256,613 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	3,244,369 - 3,271,738 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	3,246,096 - 3,258,340 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	3,220,565 - 3,235,638 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	3,162,291 - 3,169,866 (+)	NCBI		Celera
Cytogenetic Map	4	p16.3	NCBI
HuRef	4	3,189,248 - 3,196,823 (+)	NCBI		HuRef
CHM1_1	4	3,248,522 - 3,256,097 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	3,243,031 - 3,255,371 (+)	NCBI		T2T-CHM13v2.0

Msantd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	35,071,581 - 35,084,333 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	35,065,356 - 35,081,183 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	34,914,593 - 34,926,989 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	34,908,012 - 34,923,839 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	35,258,564 - 35,266,488 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	35,232,772 - 35,240,696 (+)	NCBI		MGSCv36	mm8
Celera	5	32,389,812 - 32,397,737 (+)	NCBI		Celera
Cytogenetic Map	5	B2	NCBI
cM Map	5	17.94	NCBI

Msantd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	80,059,985 - 80,070,336 (-)	NCBI		GRCr8
mRatBN7.2	14	75,832,368 - 75,845,687 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	75,835,380 - 75,844,183 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	80,288,354 - 80,294,546 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	81,529,009 - 81,535,201 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	77,974,245 - 77,980,437 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	81,091,675 - 81,105,065 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	81,090,858 - 81,100,803 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	81,780,150 - 81,793,570 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	81,476,972 - 81,483,164 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	74,761,454 - 74,767,646 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

Msantd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955514	2,037,891 - 2,053,746 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955514	2,037,891 - 2,053,746 (+)	NCBI	ChiLan1.0	ChiLan1.0

MSANTD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	3,587,575 - 3,615,269 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	3,520,980 - 3,548,660 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	3,393,646 - 3,408,820 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	3,292,754 - 3,307,786 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	3,290,354 - 3,305,139 (+)	Ensembl	panpan1.1		panPan2

MSANTD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	61,058,993 - 61,076,816 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	61,064,335 - 61,075,072 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	63,642,759 - 63,665,797 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	61,534,630 - 61,557,671 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	61,536,790 - 61,550,600 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	61,026,239 - 61,049,273 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	61,230,547 - 61,253,592 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	61,596,177 - 61,613,334 (-)	NCBI		UU_Cfam_GSD_1.0

Msantd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	66,730,271 - 66,741,262 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	20,431,861 - 20,440,848 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936477	20,431,866 - 20,438,330 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MSANTD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	45,480,897 - 45,490,192 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	45,480,545 - 45,491,188 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	1,839,654 - 1,852,085 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Msantd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	24,590,334 - 24,597,869 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624755	24,590,378 - 24,602,806 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in MSANTD1
282 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	endocrine system	hemolymphoid system	nervous system
High
Medium
Low			1	8
Below cutoff	1	1	1	9

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013978508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU929891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000046635 ⟹ ENSSSCP00000053082

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	8	1,938,397 - 1,947,985 (+)	Ensembl

RefSeq Acc Id:

XM_013978508 ⟹ XP_013833962

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	8	1,934,960 - 1,944,754 (+)	NCBI

Sequence:

show sequence

ATGCCTCGCCCAGGGCCTGTGGGCACAGAGCGGGGCTCGCTCTGTGGAGGCACCGAGCCTCGGG
GGGCCTTGACCTCTGAGACCCAGAGAAGGAGGACCTTCTACAGGCAGCAGACGGCAGGGCCCAG
CCTTGACCGGGAACGCTGCTGCCCCGACCAGCTGCACTCCCAGTTCTGGCTGCAGCGGGTGTCA
GGGCGAGCCCGGGGCCCATGGGTGCAGGGTGGGGGCACTTGGGCGGAGACTGAGGGCCGCCTCC
CGTCCCAGGACCAGGGGCAGAGGGGGCGTGACAGCGTCTTCCACGGGGAGCAGCCAGGCCACGT
GCAGCACAGCGGCAGACCCAGCCCTGTCCTGCCTGCCTGGGGTCAAAGCCCAGAGGGTGACCTC
ACCTCTCTGTCCCTCGGGCTCTTCATCTGTAAAATGGCAATGACCCCAGTGCCAGTGGCCCTCA
CAGAAGTACCGCGACCACCGAAGCTGGAGCACCGTGGGCAGCGCTCAGAGTGCCTCTCACCACT
GGCGCCTCTGCAGCTTTTAACTAAATTCCTGCCTGTCAGATGTAGGCCCCATTTTGAGCGAGGA
GCTGCCTTCCGGGAGCGGGGCTCCCACCGAGGTGCGCGGGCCCCGGGCGGGCGGCCGGCCGCGC
GCGCGCGCTTGCACCCCGCGGGTGCCCCTGGCATGGCGGCGGCCGAGGTGCCCGGCTACCTCCC
GTCCCCCCAGACGGAGAAGCACCGGCGGGCCCGCAACTGGACGGACGCCGAAATGCGCGGCCTC
ATGCTCGTCTGGGAGGAGTTCTTCGACGAGCTGAAGCAGACCAAGCGCAACGCCAAGGTGTACG
AGAAGATGGCCAGCAAGCTGCTGGAGATGACGGGCGAGCGCCGGCTGGGCGAGGAGATCAAGAT
CAAGATCACCAACATGACCTTCCAGTACAGGAAATTAAAATGCATGACAGATAGCGAGTCCGTC
CCGCCCGACTGGCCCTATTACCTAGCCATTGATAGGATTCTGGCCAAGGTCCCCGAGTCCTGTG
ATGGCAAACTGCCGGACGGCCAGCAGCCGGGGCCCTCCACGTCCCAGACCGAGGCGTCCCTGTC
GCCGTCCGCTAAGTCCGCCCCTCTGTACTTACCGTATAACCAGTGCTCCTTCGAAGGCCGCTTC
CAGGACGATGGCTCCGACAGCTCCTCCAGCTTACTGTCCCTTAAGTTCAGGTCGGACGAGCGGC
CCGTGAGGAAGCGCAAGGGGCAGGGCGGCCACTTCCAGAGGAAGAAGCTGCGGCTGCTGGAGGC
CATGCTCGGGGAGCAGCGCAAGCTGAGCCGCGCCCTGGAGGAGACCTGCCGCGAGGTGCGCCGC
GTGCTGGACCAGCACCACCTGCTGCAGGTGCAGAGCCTGCAGCTGCAGGAGCGCATGATGAGCC
TGCTCGAGAAGATCATCGCCAAGTCGGGCGTCTAGCCCCGGCCCCCGGCCCCGGGGCGCGCCGC
CTCCTGCCCCTCCGAGGGGCCTCGCAGACCTCCAGGCCTCAGCAGCGGCACGAAAGCCCCTCCC
TGGACACGCGGCCAGGACCCTGGGCCCCTGCAGGGTGCCTCCCGAGTGAGAACATTCCAGAATC
TGCTCTTCTGTCTTGACAATCGAGAATCCTTGAAAGGGCTCTTGGAAGTAAAACTGCCTGGAAG
CGGGGTGCACGGGCGGGGCTTGGGGGCAGCAGAGCAGCCAAGAGCTCAGAGGCAGGTGTGCCCT
GAGACAGCCTCTGGGCCGGGAGACCCCAGCGGCCCGTCCGCCTTCCAGCCCCCCCGCTGTTCCC
CTGCCTGGGCGGCGGGGCCCTGCTGCCTCCTCCGCAACAGCCCTAATAAAAGTGTGGACTCTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_013833962	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013833962 ⟸ XM_013978508

- Sequence:

show sequence

MPRPGPVGTERGSLCGGTEPRGALTSETQRRRTFYRQQTAGPSLDRERCCPDQLHSQFWLQRVS
GRARGPWVQGGGTWAETEGRLPSQDQGQRGRDSVFHGEQPGHVQHSGRPSPVLPAWGQSPEGDL
TSLSLGLFICKMAMTPVPVALTEVPRPPKLEHRGQRSECLSPLAPLQLLTKFLPVRCRPHFERG
AAFRERGSHRGARAPGGRPAARARLHPAGAPGMAAAEVPGYLPSPQTEKHRRARNWTDAEMRGL
MLVWEEFFDELKQTKRNAKVYEKMASKLLEMTGERRLGEEIKIKITNMTFQYRKLKCMTDSESV
PPDWPYYLAIDRILAKVPESCDGKLPDGQQPGPSTSQTEASLSPSAKSAPLYLPYNQCSFEGRF
QDDGSDSSSSLLSLKFRSDERPVRKRKGQGGHFQRKKLRLLEAMLGEQRKLSRALEETCREVRR
VLDQHHLLQVQSLQLQERMMSLLEKIIAKSGV

hide sequence

RefSeq Acc Id:

ENSSSCP00000053082 ⟸ ENSSSCT00000046635

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000040111	Ensembl
NCBI Gene	MSANTD1	ENTREZGENE
VGNC ID	VGNC:98940	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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