MSANTD1 (Myb/SANT DNA binding domain containing 1) - Rat Genome Database

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Gene: MSANTD1 (Myb/SANT DNA binding domain containing 1) Chlorocebus sabaeus
Analyze
Symbol: MSANTD1
Name: Myb/SANT DNA binding domain containing 1
RGD ID: 18770852
Description: INVOLVED IN positive regulation of DNA-templated transcription (inferred); ASSOCIATED WITH cherubism (ortholog); Ellis-Van Creveld syndrome (ortholog); FOUND IN nuclear body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myb/SANT-like DNA-binding domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12745,480,897 - 45,490,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2745,480,545 - 45,491,188 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660511,839,654 - 1,852,085 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear body  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MSANTD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12745,480,897 - 45,490,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2745,480,545 - 45,491,188 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660511,839,654 - 1,852,085 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MSANTD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3843,244,273 - 3,256,613 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl43,244,369 - 3,271,738 (+)EnsemblGRCh38hg38GRCh38
GRCh3743,246,096 - 3,258,340 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3643,220,565 - 3,235,638 (+)NCBINCBI36Build 36hg18NCBI36
Celera43,162,291 - 3,169,866 (+)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef43,189,248 - 3,196,823 (+)NCBIHuRef
CHM1_143,248,522 - 3,256,097 (+)NCBICHM1_1
T2T-CHM13v2.043,243,031 - 3,255,371 (+)NCBIT2T-CHM13v2.0
Msantd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39535,071,581 - 35,084,333 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl535,065,356 - 35,081,183 (+)EnsemblGRCm39 Ensembl
GRCm38534,914,593 - 34,926,989 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl534,908,012 - 34,923,839 (+)EnsemblGRCm38mm10GRCm38
MGSCv37535,258,564 - 35,266,488 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36535,232,772 - 35,240,696 (+)NCBIMGSCv36mm8
Celera532,389,812 - 32,397,737 (+)NCBICelera
Cytogenetic Map5B2NCBI
cM Map517.94NCBI
Msantd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81480,059,985 - 80,070,336 (-)NCBIGRCr8
mRatBN7.21475,832,368 - 75,845,687 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1475,835,380 - 75,844,183 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1480,288,354 - 80,294,546 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01481,529,009 - 81,535,201 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01477,974,245 - 77,980,437 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01481,091,675 - 81,105,065 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1481,090,858 - 81,100,803 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01481,780,150 - 81,793,570 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41481,476,972 - 81,483,164 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1474,761,454 - 74,767,646 (-)NCBICelera
Cytogenetic Map14q21NCBI
Msantd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555142,037,891 - 2,053,746 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555142,037,891 - 2,053,746 (+)NCBIChiLan1.0ChiLan1.0
MSANTD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v233,587,575 - 3,615,269 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan143,520,980 - 3,548,660 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v043,393,646 - 3,408,820 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.143,292,754 - 3,307,786 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl43,290,354 - 3,305,139 (+)Ensemblpanpan1.1panPan2
MSANTD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1361,058,993 - 61,076,816 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl361,064,335 - 61,075,072 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha363,642,759 - 63,665,797 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0361,534,630 - 61,557,671 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl361,536,790 - 61,550,600 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1361,026,239 - 61,049,273 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0361,230,547 - 61,253,592 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0361,596,177 - 61,613,334 (-)NCBIUU_Cfam_GSD_1.0
Msantd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528566,730,271 - 66,741,262 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647720,431,861 - 20,440,848 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647720,431,866 - 20,438,330 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MSANTD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl81,938,397 - 1,947,985 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.181,934,960 - 1,944,754 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.281,590,769 - 1,596,940 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Msantd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475524,590,334 - 24,597,869 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475524,590,378 - 24,602,806 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 12
Low 20 12 48
Below cutoff 15 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008018063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000013967   ⟹   ENSCSAP00000011948
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2745,480,545 - 45,491,188 (-)Ensembl
RefSeq Acc Id: XM_008018063   ⟹   XP_008016254
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12745,480,897 - 45,490,192 (-)NCBI
Vero_WHO_p1.0NW_0236660511,839,654 - 1,852,085 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008016254 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011948.1
Reference Protein Sequences
RefSeq Acc Id: XP_008016254   ⟸   XM_008018063
- UniProtKB: A0A0D9RTK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000011948   ⟸   ENSCSAT00000013967


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015872 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013967.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Myb/SANT-like_DNA-bd_dom_prot UniProtKB/TrEMBL
  Myb_DNA-bind_4 UniProtKB/TrEMBL
NCBI Gene MSANTD1 ENTREZGENE
PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR22666 UniProtKB/TrEMBL
Pfam Myb_DNA-bind_4 UniProtKB/TrEMBL
UniProt A0A0D9RTK9 ENTREZGENE, UniProtKB/TrEMBL