Glt8d1 (glycosyltransferase 8 domain containing 1) - Rat Genome Database

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Gene: Glt8d1 (glycosyltransferase 8 domain containing 1) Heterocephalus glaber
Analyze
Symbol: Glt8d1
Name: glycosyltransferase 8 domain containing 1
RGD ID: 18904217
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); transferase activity (inferred); UDP-glycosyltransferase activity (inferred); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); congenital disorder of glycosylation In (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycosyltransferase 8 domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248224,506,395 - 4,521,704 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248224,506,275 - 4,520,151 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Glt8d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248224,506,395 - 4,521,704 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248224,506,275 - 4,520,151 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GLT8D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38352,694,486 - 52,705,791 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl352,694,486 - 52,706,032 (-)EnsemblGRCh38hg38GRCh38
GRCh37352,728,502 - 52,739,807 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,703,544 - 52,715,088 (-)NCBINCBI36Build 36hg18NCBI36
Build 34352,703,544 - 52,712,662NCBI
Celera352,707,215 - 52,718,759 (-)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef352,790,354 - 52,801,626 (-)NCBIHuRef
CHM1_1352,680,576 - 52,692,270 (-)NCBICHM1_1
T2T-CHM13v2.0352,727,397 - 52,738,983 (-)NCBIT2T-CHM13v2.0
Glt8d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,723,137 - 30,733,948 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,723,357 - 30,733,948 (+)EnsemblGRCm39 Ensembl
GRCm381431,001,197 - 31,012,441 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,001,400 - 31,011,991 (+)EnsemblGRCm38mm10GRCm38
MGSCv371431,814,579 - 31,825,627 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361429,830,713 - 29,840,994 (+)NCBIMGSCv36mm8
Celera1427,259,208 - 27,270,258 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.09NCBI
Glt8d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,198,152 - 6,213,671 (+)NCBIGRCr8
mRatBN7.2166,192,269 - 6,207,227 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,192,300 - 6,207,229 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx166,204,136 - 6,219,074 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,349,598 - 7,364,538 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,211,305 - 6,226,236 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0167,082,450 - 7,097,405 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,082,450 - 7,097,401 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,011,033 - 7,025,989 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,429,357 - 6,444,262 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,429,354 - 6,444,259 (+)NCBI
Celera168,982,084 - 8,997,063 (-)NCBICelera
Cytogenetic Map16p16NCBI
Glt8d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554302,678,166 - 2,690,555 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554302,678,166 - 2,690,555 (-)NCBIChiLan1.0ChiLan1.0
GLT8D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2252,688,109 - 52,699,781 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1352,692,875 - 52,704,528 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0352,634,996 - 52,646,702 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1353,862,812 - 53,873,900 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,862,812 - 53,873,900 (-)Ensemblpanpan1.1panPan2
GLT8D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,093,826 - 37,103,213 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,093,653 - 37,103,211 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,075,552 - 37,085,237 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02037,444,317 - 37,454,006 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2037,447,602 - 37,454,004 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12036,807,880 - 36,817,553 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,216,508 - 37,226,173 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02037,493,970 - 37,503,657 (+)NCBIUU_Cfam_GSD_1.0
Glt8d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,345,374 - 170,357,203 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364733,483,948 - 3,495,773 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364733,483,948 - 3,495,611 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLT8D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,828,604 - 34,839,794 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,828,601 - 34,839,854 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21338,028,635 - 38,039,461 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GLT8D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12214,068,377 - 14,078,064 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2214,068,718 - 14,077,775 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041152,822,225 - 152,831,715 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000027383   ⟹   ENSHGLP00000027142
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248224,506,395 - 4,521,704 (+)Ensembl
RefSeq Acc Id: XM_004864384   ⟹   XP_004864441
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248224,506,275 - 4,519,095 (+)NCBI
RefSeq Acc Id: XM_004864385   ⟹   XP_004864442
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248224,506,275 - 4,520,151 (+)NCBI
RefSeq Acc Id: XM_021244067   ⟹   XP_021099726
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248224,506,733 - 4,519,095 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004864441 (Get FASTA)   NCBI Sequence Viewer  
  XP_004864442 (Get FASTA)   NCBI Sequence Viewer  
  XP_021099726 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027142
  ENSHGLP00000030194
  ENSHGLP00100021330
GenBank Protein JAO01001 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004864442   ⟸   XM_004864385
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004864441   ⟸   XM_004864384
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JB82 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099726   ⟸   XM_021244067
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JB82 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000027142   ⟸   ENSHGLT00000027383


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019305 Ensembl, ENTREZGENE
  ENSHGLG00000031909 UniProtKB/TrEMBL
  ENSHGLG00100015705 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000027383 ENTREZGENE
  ENSHGLT00000089074 UniProtKB/TrEMBL
  ENSHGLT00100021555 UniProtKB/TrEMBL
InterPro Glyco_trans_8 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report hgl:101699179 UniProtKB/TrEMBL
NCBI Gene Glt8d1 ENTREZGENE
PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam Glyco_transf_8 UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A0P6JB82 ENTREZGENE, UniProtKB/TrEMBL