Glt8d1 (glycosyltransferase 8 domain containing 1) - Rat Genome Database

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Gene: Glt8d1 (glycosyltransferase 8 domain containing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Glt8d1
Name: glycosyltransferase 8 domain containing 1
RGD ID: 12507435
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); UDP-glycosyltransferase activity (inferred); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); congenital disorder of glycosylation In (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycosyltransferase 8 domain containing 1, transcript variant X1; glycosyltransferase 8 domain containing 1, transcript variant X2; glycosyltransferase 8 domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,345,374 - 170,357,203 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364733,483,948 - 3,495,773 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364733,483,948 - 3,495,611 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Glt8d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,345,374 - 170,357,203 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364733,483,948 - 3,495,773 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364733,483,948 - 3,495,611 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLT8D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38352,694,486 - 52,705,791 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl352,694,486 - 52,706,032 (-)EnsemblGRCh38hg38GRCh38
GRCh37352,728,502 - 52,739,807 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,703,544 - 52,715,088 (-)NCBINCBI36Build 36hg18NCBI36
Build 34352,703,544 - 52,712,662NCBI
Celera352,707,215 - 52,718,759 (-)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef352,790,354 - 52,801,626 (-)NCBIHuRef
CHM1_1352,680,576 - 52,692,270 (-)NCBICHM1_1
T2T-CHM13v2.0352,727,397 - 52,738,983 (-)NCBIT2T-CHM13v2.0
Glt8d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,723,137 - 30,733,948 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,723,357 - 30,733,948 (+)EnsemblGRCm39 Ensembl
GRCm381431,001,197 - 31,012,441 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,001,400 - 31,011,991 (+)EnsemblGRCm38mm10GRCm38
MGSCv371431,814,579 - 31,825,627 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361429,830,713 - 29,840,994 (+)NCBIMGSCv36mm8
Celera1427,259,208 - 27,270,258 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.09NCBI
Glt8d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,198,152 - 6,213,671 (+)NCBIGRCr8
mRatBN7.2166,192,269 - 6,207,227 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,192,300 - 6,207,229 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx166,204,136 - 6,219,074 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,349,598 - 7,364,538 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,211,305 - 6,226,236 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0167,082,450 - 7,097,405 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,082,450 - 7,097,401 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,011,033 - 7,025,989 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,429,357 - 6,444,262 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,429,354 - 6,444,259 (+)NCBI
Celera168,982,084 - 8,997,063 (-)NCBICelera
Cytogenetic Map16p16NCBI
Glt8d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554302,678,166 - 2,690,555 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554302,678,166 - 2,690,555 (-)NCBIChiLan1.0ChiLan1.0
GLT8D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2252,688,109 - 52,699,781 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1352,692,875 - 52,704,528 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0352,634,996 - 52,646,702 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1353,862,812 - 53,873,900 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,862,812 - 53,873,900 (-)Ensemblpanpan1.1panPan2
GLT8D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,093,826 - 37,103,213 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,093,653 - 37,103,211 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,075,552 - 37,085,237 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02037,444,317 - 37,454,006 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2037,447,602 - 37,454,004 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12036,807,880 - 36,817,553 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,216,508 - 37,226,173 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02037,493,970 - 37,503,657 (+)NCBIUU_Cfam_GSD_1.0
GLT8D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,828,604 - 34,839,794 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,828,601 - 34,839,854 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21338,028,635 - 38,039,461 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GLT8D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12214,068,377 - 14,078,064 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2214,068,718 - 14,077,775 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041152,822,225 - 152,831,715 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Glt8d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248224,506,395 - 4,521,704 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248224,506,275 - 4,520,151 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000000359   ⟹   ENSSTOP00000000322
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364733,483,948 - 3,495,773 (-)Ensembl
RefSeq Acc Id: XM_005317185   ⟹   XP_005317242
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118170,345,374 - 170,357,203 (-)NCBI
SpeTri2.0NW_0049364733,483,948 - 3,495,547 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013361760   ⟹   XP_013217214
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118170,345,374 - 170,357,203 (-)NCBI
SpeTri2.0NW_0049364733,483,948 - 3,495,611 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040289701   ⟹   XP_040145635
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118170,345,374 - 170,356,856 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005317242 (Get FASTA)   NCBI Sequence Viewer  
  XP_013217214 (Get FASTA)   NCBI Sequence Viewer  
  XP_040145635 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000322.2
GenBank Protein KAG3279326 (Get FASTA)   NCBI Sequence Viewer  
  KAG3279327 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013217214   ⟸   XM_013361760
- UniProtKB: I3LWG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005317242   ⟸   XM_005317185
- UniProtKB: I3LWG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040145635   ⟸   XM_040289701
- UniProtKB: I3LWG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000000322   ⟸   ENSSTOT00000000359


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000360 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000359.3 UniProtKB/TrEMBL
InterPro Glyco_trans_8 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene Glt8d1 ENTREZGENE
PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam Glyco_transf_8 UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt I3LWG7 ENTREZGENE, UniProtKB/TrEMBL