SHISA9 (shisa family member 9) - Rat Genome Database

Name: SHISA9
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SHISA9 (shisa family member 9) Chlorocebus sabaeus

Analyze

Symbol:

SHISA9

Name:

shisa family member 9

RGD ID:

18796016

Description:

ENCODES a protein that exhibits PDZ domain binding (ortholog); INVOLVED IN regulation of short-term neuronal synaptic plasticity (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); dendritic spine membrane (ortholog); glutamatergic synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

protein shisa-9

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SHISA9 (shisa family member 9)	NCBI	Ortholog
Mus musculus (house mouse):	Shisa9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Shisa9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Shisa9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SHISA9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SHISA9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Shisa9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SHISA9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Shisa9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	12,347,832 - 12,687,382 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666068	17,384,857 - 17,755,670 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of short-term neuronal synaptic plasticity (ISO)

Cellular Component

AMPA glutamate receptor complex (ISO)

dendritic spine membrane (ISO)

glutamatergic synapse (ISO)

ionotropic glutamate receptor complex (ISO)

postsynaptic density (ISO)

postsynaptic density membrane (ISO)

postsynaptic membrane (ISO)

synapse (ISO)

Molecular Function

PDZ domain binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SHISA9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	12,347,832 - 12,687,382 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666068	17,384,857 - 17,755,670 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

SHISA9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	12,901,598 - 13,563,017 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	12,901,598 - 13,240,416 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	12,995,455 - 13,334,273 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	13,083,744 - 13,236,767 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	13,170,353 - 13,509,146 (+)	NCBI		Celera
Cytogenetic Map	16	p13.12	NCBI
HuRef	16	12,912,276 - 13,251,427 (+)	NCBI		HuRef
CHM1_1	16	12,995,403 - 13,332,162 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	12,938,717 - 13,600,679 (+)	NCBI		T2T-CHM13v2.0

Shisa9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	11,801,457 - 12,088,768 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	11,801,977 - 12,088,766 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	11,983,593 - 12,270,904 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	11,984,113 - 12,270,902 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	11,984,206 - 12,270,997 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	11,897,726 - 12,183,527 (+)	NCBI		MGSCv36	mm8
Celera	16	12,611,680 - 12,899,218 (+)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	6.89	NCBI

Shisa9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	3,842,625 - 4,135,618 (-)	NCBI		GRCr8
mRatBN7.2	10	3,335,616 - 3,629,334 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	3,337,979 - 3,627,773 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	2,777,675 - 3,072,842 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	1,658,327 - 1,940,603 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	3,152,124 - 3,177,530 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	2,370,352 - 2,661,832 (-)	NCBI		Celera
Cytogenetic Map	10	q11	NCBI

Shisa9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	5,540,779 - 5,816,865 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	5,537,372 - 5,817,076 (-)	NCBI	ChiLan1.0	ChiLan1.0

SHISA9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	13,441,011 - 14,105,824 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	17,211,861 - 17,880,067 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	11,833,062 - 12,494,972 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	13,258,949 - 13,596,352 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	13,258,945 - 13,591,356 (+)	Ensembl	panpan1.1		panPan2

SHISA9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	29,801,919 - 30,083,397 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	29,801,904 - 30,083,420 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	31,166,674 - 31,453,618 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	29,968,383 - 30,255,994 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	29,971,854 - 30,256,117 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	29,783,451 - 30,070,591 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	29,658,618 - 29,945,558 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	30,080,489 - 30,368,103 (-)	NCBI		UU_Cfam_GSD_1.0

Shisa9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	113,397,030 - 113,643,014 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	1,494,885 - 1,737,439 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	1,491,869 - 1,738,118 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SHISA9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	29,969,122 - 30,272,943 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	29,966,481 - 30,272,800 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	31,242,556 - 31,253,704 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Shisa9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624782	5,214,341 - 5,500,967 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624782	5,210,878 - 5,501,438 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007986095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007986103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007986111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_007986095 ⟹ XP_007984286

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	5	12,347,832 - 12,687,382 (+)	NCBI
Vero_WHO_p1.0	NW_023666068	17,384,857 - 17,755,670 (-)	NCBI

Sequence:

show sequence

TCCCCCTTCCCTCCTGCCCTCCCTTCATTCCACAAGTGTCGCTTCGCTCTCTCAGCGCACTTGG
CGAGCTGGAGAGGTGAGAGGGATACTGCGAGAGGGCTCGGGGCGGCCAGTCCGGGGCCGCCGGC
CAAGGCTAGGCGCTGCCAGCCCGATTCTCCCCTGCTCTCCGCCCCCGCCTCCCCCAGTGGCCGG
CCGGACCTGCACCCCGAGCTTGCCCCCGCTCATCCTCCCCCCGCCCGGCCGGGCGCGCTCCTCC
CCGGCCAGCCCCTCGGCGCGCGGCGCGCTGGAGGCGAACGCGGGCTGAGCCGAGCGCAGTGGCC
GCCGACCACCGAGCGCCCCGCGCCGCTCCCTGCATGTGCGGCCCGCGGCGGCTCGCAGCCCCCG
GCAGCAGCCTCGGCAGCTTCGGCCGCGCCTCGAGAGGCGGCCGCAGCGGCTCCAGCGGCGGCCG
AGCGGCCGAGCACGGGCTGGGAGACACCATGCGCCGCGTCCTCCGGCTGCTCCTCGGCTGCTTC
CTCACCGAGCTGTGCGCCCGTGTGTGCCGGGCGCAGGAGCGAGCGGGGCACGGGCAGCTGGCGC
AACTGGGCGGCGTGTTGCTGCTGGCGGGGGGCAACCGCTCCGGGGCCGCCTCAGGAGAGGCCAC
CGAGGGCGCCGAGGCATCCGACGCGCCCCCGACCCGGGCGCCTACGCCGGACTTCTGCCGGGGC
TACTTCGATGTCATGGGCCAGTGGGACCCGCCGTTCAACTGCAGCTCGGGCGACTTCATCTTCT
GCTGCGGGACTTGTGGCTTCCGGTTCTGCTGCACGTTTAAGAAGCGGCGACTGAATCAAAGCAC
CTGCACCAACTACGACACGCCGCTCTGGCTCAACACCGGCAAGCCCCCCGCCCGCAAGGACGAC
CCCTTGCACGACCCCACCAAGGACAAGACCAACCTGATCGTCTACATCATCTGCGGGGTGGTGG
CCGTCATGGTGCTCGTGGGCATCTTCACCAAGCTGGGGCTGGAGAAAGCGCACCGGCCCCAGAG
GGAGCACATGTCCAGGGCCCTTGCGGATGTCATGAGGCCACAGGGCCACTGCAACACTGATCAC
ATGGAGAGAGACCTAAACATCGTTGTCCACGTCCAGCATTATGAGAACATGGACACGAGAACCC
CCATAAATAATCTTCATGCCACCCAGATGAACAACGCAGTGCCCACCTCTCCTCTCCTCCAGCA
GATGGGCCATCCACATTCATACCCAAACCTGGGTCAGATCTCCAACCCCTACGAACAGCAGCCA
CCAGGGAAAGAGCTCAACAAGTACGCCTCCTTAAAGGCAGTCGGAAGTTCTGATGGTGACTGGG
CAGTATCGACACTTAAGTCACCAAAAGCTGACAAGGTCAATGATGACTTCTACACCAAGCGACG
GCACCTGGCTGAGCTGGCTGCTAAGGGGAACCTACCTTTGCACCCCGTAAGAGTGGAGGACGAG
CCCGGGGCCTTCAGCCCTGAGCATGGTCCTGCCAAGCAGAATGGACAGAAGTCCCGCACCAACA
AGATGCCCCCACATCCCCTGGCCTACAACTCTACCACCAACTTTAAGGGCTGGGACCCCAACGA
GCAGTCCCTCCGGCGGCAGGCTTACGGCAACAAGGGCAAGCTTGGTACGGCCGAGACAGGCTCC
AGCGACCCCTTGGGAACTCGCCCCCAGCACTACCCACCCCCACAGCCATACTTCATCACCAATA
GCAAAACAGAAGTGACTGTCTGAGCTTTCACCACAGGGAGCACCCTGGAGACCACACTCAACTG
AGAGAGGCAAAAAACAACCCCGCCCACACCCTCCCTGTCCTCCCCCAACATGTGCGTCCACACA
CTCACTCTCAACAAGAACCAACTCTAAACCTACTGGGGACACGGAGTCGCGTTTTTCCTAGGTC
ATGCCTATAACGTGTCGGCGGGCAGCTGAGAAAGACCGAAGCCTGGACTTTCAGCAATACAGCA
AAGAGGAAAACTGAGGCACACTCTTTCCACTCCGGGACCAAGGTGGCCAACTCACATGCCCACA
CCATGGGGCTGAGTTTTCTTTTCCTCCTAACTTGAAACTGAAATCCATGATGACAAAATATAAA
AGTAGCACAATTTAGAGAAATTGTCCATTTGAGCACATACACTACTTGCCACGTGCTGTCTGTT
TCTAGGTTCCAGAGCCAGGGTGGAAATGGGGAAAGAGAATGAGGGAGGACACAAGAGAAGAGTG
CATTCTGGAAGAGGAGTTGTTCTGGAAGGAATTTGCCCACATCAGAAGCATTTTTCTAATTCCA
AGAAGTGGTGACGTGGATGTAAAATTTTGACAGAGCATGAAACAGTAACTGGACCCCAACCATT
CTATTTATAGTACTTTTCATATCATCCATATTGAACGCAAAAAACAACACACTCTGAAACTCAC
AAAAAATAAATAGACCCTGAACCCACCAACAATGATGGGAAGGAAAAAAACAACAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_007986103 ⟹ XP_007984294

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	5	12,347,832 - 12,687,382 (+)	NCBI
Vero_WHO_p1.0	NW_023666068	17,384,857 - 17,755,670 (-)	NCBI

Sequence:

show sequence

TCCCCCTTCCCTCCTGCCCTCCCTTCATTCCACAAGTGTCGCTTCGCTCTCTCAGCGCACTTGG
CGAGCTGGAGAGGTGAGAGGGATACTGCGAGAGGGCTCGGGGCGGCCAGTCCGGGGCCGCCGGC
CAAGGCTAGGCGCTGCCAGCCCGATTCTCCCCTGCTCTCCGCCCCCGCCTCCCCCAGTGGCCGG
CCGGACCTGCACCCCGAGCTTGCCCCCGCTCATCCTCCCCCCGCCCGGCCGGGCGCGCTCCTCC
CCGGCCAGCCCCTCGGCGCGCGGCGCGCTGGAGGCGAACGCGGGCTGAGCCGAGCGCAGTGGCC
GCCGACCACCGAGCGCCCCGCGCCGCTCCCTGCATGTGCGGCCCGCGGCGGCTCGCAGCCCCCG
GCAGCAGCCTCGGCAGCTTCGGCCGCGCCTCGAGAGGCGGCCGCAGCGGCTCCAGCGGCGGCCG
AGCGGCCGAGCACGGGCTGGGAGACACCATGCGCCGCGTCCTCCGGCTGCTCCTCGGCTGCTTC
CTCACCGAGCTGTGCGCCCGTGTGTGCCGGGCGCAGGAGCGAGCGGGGCACGGGCAGCTGGCGC
AACTGGGCGGCGTGTTGCTGCTGGCGGGGGGCAACCGCTCCGGGGCCGCCTCAGGAGAGGCCAC
CGAGGGCGCCGAGGCATCCGACGCGCCCCCGACCCGGGCGCCTACGCCGGACTTCTGCCGGGGC
TACTTCGATGTCATGGGCCAGTGGGACCCGCCGTTCAACTGCAGCTCGGGCGACTTCATCTTCT
GCTGCGGGACTTGTGGCTTCCGGTTCTGCTGCACGTTTAAGAAGCGGCGACTGAATCAAAGCAC
CTGCACCAACTACGACACGCCGCTCTGGCTCAACACCGGCAAGCCCCCCGCCCGCAAGGACGAC
CCCTTGCACGACCCCACCAAGGACAAGACCAACCTGATCGTCTACATCATCTGCGGGGTGGTGG
CCGTCATGGTGCTCGTGGGCATCTTCACCAAGCTGGGGCTGGAGAAAGCGCACCGGCCCCAGAG
GGAGCACATGTCCAGGGCCCTTGCGGATGTCATGAGGCCACAGGGCCACTGCAACACTGATCAC
ATGGAGAGAGACCTAAACATCGTTGTCCACGTCCAGCATTATGAGAACATGGACACGAGAACCC
CCATAAATAATCTTCATGCCACCCAGATGAACAACGCAGTGCCCACCTCTCCTCTCCTCCAGCA
GATGGGCCATCCACATTCATACCCAAACCTGGGTCAGATCTCCAACCCCTACGAACAGCAGCCA
CCAGGGAAAGAGCTCAACAAGTACGCCTCCTTAAAGGCAGTCGCTGACAAGGTCAATGATGACT
TCTACACCAAGCGACGGCACCTGGCTGAGCTGGCTGCTAAGGGGAACCTACCTTTGCACCCCGT
AAGAGTGGAGGACGAGCCCGGGGCCTTCAGCCCTGAGCATGGTCCTGCCAAGCAGAATGGACAG
AAGTCCCGCACCAACAAGATGCCCCCACATCCCCTGGCCTACAACTCTACCACCAACTTTAAGG
GCTGGGACCCCAACGAGCAGTCCCTCCGGCGGCAGGCTTACGGCAACAAGGGCAAGCTTGGTAC
GGCCGAGACAGGCTCCAGCGACCCCTTGGGAACTCGCCCCCAGCACTACCCACCCCCACAGCCA
TACTTCATCACCAATAGCAAAACAGAAGTGACTGTCTGAGCTTTCACCACAGGGAGCACCCTGG
AGACCACACTCAACTGAGAGAGGCAAAAAACAACCCCGCCCACACCCTCCCTGTCCTCCCCCAA
CATGTGCGTCCACACACTCACTCTCAACAAGAACCAACTCTAAACCTACTGGGGACACGGAGTC
GCGTTTTTCCTAGGTCATGCCTATAACGTGTCGGCGGGCAGCTGAGAAAGACCGAAGCCTGGAC
TTTCAGCAATACAGCAAAGAGGAAAACTGAGGCACACTCTTTCCACTCCGGGACCAAGGTGGCC
AACTCACATGCCCACACCATGGGGCTGAGTTTTCTTTTCCTCCTAACTTGAAACTGAAATCCAT
GATGACAAAATATAAAAGTAGCACAATTTAGAGAAATTGTCCATTTGAGCACATACACTACTTG
CCACGTGCTGTCTGTTTCTAGGTTCCAGAGCCAGGGTGGAAATGGGGAAAGAGAATGAGGGAGG
ACACAAGAGAAGAGTGCATTCTGGAAGAGGAGTTGTTCTGGAAGGAATTTGCCCACATCAGAAG
CATTTTTCTAATTCCAAGAAGTGGTGACGTGGATGTAAAATTTTGACAGAGCATGAAACAGTAA
CTGGACCCCAACCATTCTATTTATAGTACTTTTCATATCATCCATATTGAACGCAAAAAACAAC
ACACTCTGAAACTCACAAAAAATAAATAGACCCTGAACCCACCAACAATGATGGGAAGGAAAAA
AACAACAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_007986111 ⟹ XP_007984302

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	5	12,347,833 - 12,355,838 (+)	NCBI
Vero_WHO_p1.0	NW_023666068	17,745,762 - 17,755,669 (-)	NCBI

Sequence:

show sequence

CCCCCTTCCCTCCTGCCCTCCCTTCATTCCACAAGTGTCGCTTCGCTCTCTCAGCGCACTTGGC
GAGCTGGAGAGGTGAGAGGGATACTGCGAGAGGGCTCGGGGCGGCCAGTCCGGGGCCGCCGGCC
AAGGCTAGGCGCTGCCAGCCCGATTCTCCCCTGCTCTCCGCCCCCGCCTCCCCCAGTGGCCGGC
CGGACCTGCACCCCGAGCTTGCCCCCGCTCATCCTCCCCCCGCCCGGCCGGGCGCGCTCCTCCC
CGGCCAGCCCCTCGGCGCGCGGCGCGCTGGAGGCGAACGCGGGCTGAGCCGAGCGCAGTGGCCG
CCGACCACCGAGCGCCCCGCGCCGCTCCCTGCATGTGCGGCCCGCGGCGGCTCGCAGCCCCCGG
CAGCAGCCTCGGCAGCTTCGGCCGCGCCTCGAGAGGCGGCCGCAGCGGCTCCAGCGGCGGCCGA
GCGGCCGAGCACGGGCTGGGAGACACCATGCGCCGCGTCCTCCGGCTGCTCCTCGGCTGCTTCC
TCACCGAGCTGTGCGCCCGTGTGTGCCGGGCGCAGGAGCGAGCGGGGCACGGGCAGCTGGCGCA
ACTGGGCGGCGTGTTGCTGCTGGCGGGGGGCAACCGCTCCGGGGCCGCCTCAGGAGAGGCCACC
GAGGGCGCCGAGGCATCCGACGCGCCCCCGACCCGGGCGCCTACGCCGGACTTCTGCCGGGGCT
ACTTCGATGTCATGGGCCAGTGGGACCCGCCGTTCAACTGCAGCTCGGGCGACTTCATCTTCTG
CTGCGGGACTTGTGGCTTCCGGTTCTGCTGCACGTTTAAGAAGCGGCGACTGAATCAAAGCACC
TGCACCAACTACGACACGCCGCTCTGGCTCAACACCGGCAAGCCCCCCGCCCGCAAGGACGACC
CCTTGCACGACCCCACCAAGGACAAGACCAACCTGATCGTCTACATCATCTGCGGGGTGGTGGC
CGTCATGGTGCTCGTGGGCATCTTCACCAAGCTGGGGCTGGAGAAAGCGCACCGGCCCCAGAGG
GAGCACATGTCCAGGCTCTATGACAATCTGCTGTTTACGGAGGCACAGATTTCTTTCCAAGAGG
ATGAACCTGCCCCTGGTGAGTGGAGTGTTGGACTTCAAACCCGAACCGTCTGAGTGCATGGATC
CTTGACCGCTAGGCTGCACTGCATTTGAGTGCAAATCTTCAGGAATTCCATTCTTCTGAGATCA
CAAAGAAGTACGTGATGCCCTGCAAACAACAGTGCATGCATCGGGGCCAGTTCAAGAAGCCACC
ATAAGATGAAGACTAGGAACATTTTCTGTAACGGCCCCGGCAGGCCCAGATGTCTTGGTGGAGG
CGTTGGTGAGAAATGACCTTGGGGACAGAAGCACATGTTTGAAGCTCTCTACACTTGAAGCCAG
TAGGGAACACATGTCATTATTTTGTCCACCTTCAAACAGAATTGGAAATCCAAGTGGCAAGTGG
CAGAGCAGGATCCGGTGTGTTTTAAAAACATGCTTCAGAGGAACTGGCATCCCCTGCAAAGAAA
TAGCAACAAATAATGATAAATGCACCTCCTTCTCTTGCCTTTTCCCTTCCATTTTCTCTCCTGC
CTCCCATCTTTCTATGCATTTGTGGTTATCCTAAGGCTTTGACCAGCTTCCCAGGCTGGAGAAG
TCCATGTGTGCATGCGTCTACTGTTGGCCACGGAAAAGTTTTTATTTTTCTTTGCAGGGTGTGT
TGACTTCTCTTTGCGCACTGAGTCCTTGCATTTTAAAAGCAACTTCATTGAAGTATAATTTACA
CAACAAAATGCACACATTGTAAGTGTATAATTTGATGAGCTTGGACAAATGTCTACACCTGTGC
CACCATTACTGTAGAAAGCTCACTCATGCCCATTGCCTTTGTATTTTTGAGAAATAAATGGTGC
TTCTCGTGTAAGAAGAAGTGCTCAGGAACTCTATTCAAGTGTTTAAAAGTCAACACATAGATTG
GACATTGGGATACCTGGAGACTTTGAAGCAAGATACTGGAAGTCTCAGTTCTGTTTGGAAATAT
TGGTGTCATATATTTATCATTGTAATCGGAAAGAAAAGAGATGCACCATTTTCTTCTTGTTCCT
TGGATAAGCTAAGCTCATTCCCACTTTGGAGCTGTTGCACTGGCCCTTGTGTGGCTGGTCTCT

hide sequence

Protein Sequences


Protein RefSeqs	XP_007984286	(Get FASTA)	NCBI Sequence Viewer
	XP_007984294	(Get FASTA)	NCBI Sequence Viewer
	XP_007984302	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_007984286 ⟸ XM_007986095
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_007984294 ⟸ XM_007986103
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_007984302 ⟸ XM_007986111
- Peptide Label:	isoform X3

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	SHISA9	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar