SHISA9 (shisa family member 9) - Rat Genome Database

Name: SHISA9
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SHISA9 (shisa family member 9) Canis lupus familiaris

Analyze

Symbol:

SHISA9

Name:

shisa family member 9

RGD ID:

12162732

Description:

ENCODES a protein that exhibits PDZ domain binding (inferred); INVOLVED IN regulation of short-term neuronal synaptic plasticity (inferred); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SHISA9 (shisa family member 9)	HGNC	HomoloGene, NCBI
Mus musculus (house mouse):	Shisa9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Shisa9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Shisa9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SHISA9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Shisa9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SHISA9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SHISA9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Shisa9 (shisa family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	29,801,919 - 30,083,397 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	29,801,904 - 30,083,420 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	31,166,674 - 31,453,618 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	29,968,383 - 30,255,994 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	29,971,854 - 30,256,117 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	29,783,451 - 30,070,591 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	29,658,618 - 29,945,558 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	30,080,489 - 30,368,103 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of short-term neuronal synaptic plasticity (IEA)

Cellular Component

AMPA glutamate receptor complex (IEA)

cell projection (IEA)

dendritic spine membrane (IEA)

glutamatergic synapse (IEA,ISO)

ionotropic glutamate receptor complex (IEA)

plasma membrane (IEA)

postsynaptic density (IEA)

postsynaptic density membrane (IEA,ISO)

postsynaptic membrane (IEA)

synapse (IEA)

Molecular Function

PDZ domain binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SHISA9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	29,801,919 - 30,083,397 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	29,801,904 - 30,083,420 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	31,166,674 - 31,453,618 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	29,968,383 - 30,255,994 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	29,971,854 - 30,256,117 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	29,783,451 - 30,070,591 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	29,658,618 - 29,945,558 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	30,080,489 - 30,368,103 (-)	NCBI		UU_Cfam_GSD_1.0

SHISA9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	12,901,598 - 13,563,017 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	12,901,598 - 13,240,416 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	12,995,455 - 13,334,273 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	13,083,744 - 13,236,767 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	13,170,353 - 13,509,146 (+)	NCBI		Celera
Cytogenetic Map	16	p13.12	NCBI
HuRef	16	12,912,276 - 13,251,427 (+)	NCBI		HuRef
CHM1_1	16	12,995,403 - 13,332,162 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	12,938,717 - 13,600,679 (+)	NCBI		T2T-CHM13v2.0

Shisa9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	11,801,457 - 12,088,768 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	11,801,977 - 12,088,766 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	11,983,593 - 12,270,904 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	11,984,113 - 12,270,902 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	11,984,206 - 12,270,997 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	11,897,726 - 12,183,527 (+)	NCBI		MGSCv36	mm8
Celera	16	12,611,680 - 12,899,218 (+)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	6.89	NCBI

Shisa9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	3,842,625 - 4,135,618 (-)	NCBI		GRCr8
mRatBN7.2	10	3,335,616 - 3,629,334 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	3,337,979 - 3,627,773 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	2,777,675 - 3,072,842 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	1,658,327 - 1,940,603 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	3,152,124 - 3,177,530 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	2,370,352 - 2,661,832 (-)	NCBI		Celera
Cytogenetic Map	10	q11	NCBI

Shisa9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	5,540,779 - 5,816,865 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	5,537,372 - 5,817,076 (-)	NCBI	ChiLan1.0	ChiLan1.0

SHISA9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	13,441,011 - 14,105,824 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	17,211,861 - 17,880,067 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	11,833,062 - 12,494,972 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	13,258,949 - 13,596,352 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	13,258,945 - 13,591,356 (+)	Ensembl	panpan1.1		panPan2

Shisa9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	113,397,030 - 113,643,014 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	1,494,885 - 1,737,439 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	1,491,869 - 1,738,118 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SHISA9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	29,969,122 - 30,272,943 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	29,966,481 - 30,272,800 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	31,242,556 - 31,253,704 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SHISA9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	12,347,832 - 12,687,382 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666068	17,384,857 - 17,755,670 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Shisa9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624782	5,214,341 - 5,500,967 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624782	5,210,878 - 5,501,438 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SHISA9
2443 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium									6
Low			5		3				5	8		2
Below cutoff	5	5	17	6	3	6	6	6	1		10	4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003434853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005621527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038479094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038479095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038540318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038540319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038604421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038604423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038669123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038669124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000029902 ⟹ ENSCAFP00000027790

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	29,918,629 - 30,083,420 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000044843 ⟹ ENSCAFP00000036580

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	29,801,904 - 30,083,420 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845020572 ⟹ ENSCAFP00845016137

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	29,971,854 - 30,256,117 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845020589 ⟹ ENSCAFP00845016151

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	30,087,364 - 30,256,117 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845020663 ⟹ ENSCAFP00845016208

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	30,254,871 - 30,256,117 (-)	Ensembl

RefSeq Acc Id:

XM_003434853 ⟹ XP_003434901

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	29,801,919 - 30,083,397 (-)	NCBI
Dog10K_Boxer_Tasha	6	31,166,674 - 31,453,618 (-)	NCBI

Sequence:

show sequence

CGCTGGAGGCGAACGCGGGCTGAGCCGCGCGCCGTGGCCGCGACCACCGAGCGCCCCGCGCCGC
CCCCTGCATGTGCGGCCCGCGGCGGCTCGCAGCCCCCGGCAGCAGCCTCGGCAGCTTCGGCCGC
GCCTCGAGAGGCGGCTGCAGCGGCTCCAGCGGCGGCCGAGCGGCCGAGCCCGGGCTGGGAGACA
CGATGCGCCGCGTCCTCCGGCTGCTCCTCGGCTGCTTCCTCACCGAGCTGTGCGCCCGCGTGTG
CCGGGCGCAGGAGCGAGCGGGGCACGGGCAGCTGGCGCAGCTGGGCGGCGTGGTCGTGCTGGCG
GGGGGCAACCGCTCCGGGGCCGCCTCCGGGGAGGCCGGCGAGGGCGCGGGGGTCTCGGACGCGC
CCCCGACCCGGGCGCCCACGCCGGACTTCTGCCGCGGCTACTTCGATGTCATGGGCCAGTGGGA
CCCGCCGTTTAACTGCAGCTCGGGCGACTTTATCTTCTGCTGCGGGACTTGTGGCTTCCGGTTC
TGCTGCACGTTTAAGAAGCGGCGACTGAACCAGAGCACCTGCACCAACTACGACACTCCGCTCT
GGCTCAACACCGGCAAGCCCCCCGCGCGCAAGGACGACCCCCTGCACGACCCCACCAAGGACAA
GACCAACCTGATCGTTTACATCATCTGCGGGGTGGTGGCCGTCATGGTGCTTGTGGGCATCTTC
ACCAAGCTGGGGCTGGAGAAAGCGCACCGGCCCCAAAGGGAGCACATGTCCAGGGCCCTTGCAG
ATGTCATGAGGCCACAGGGCCACTGCAACACTGACCACATGGAGAGGGACCTCAACATTGTGGT
TCATGTCCAGCATTATGAAAACATGGATACCAGAACCCCCATAAATAATCTTCACACGACCCAG
ATGAACAACGCGGTGCCCACCTCCCCCTTGCTCCAGCAGATGGGCCATCCGCATTCGTACCCCA
GCCTGGGCCAGATCTCCAACCCCTATGAGCAGCAGCCACCGGGCAAAGAGCTTAACAAGTATGC
CTCCTTGAAGGCAGTCGGAAGTTCTGATGGTGACTGGGCAGTGGCGACACTTAAGTCACCAAAA
GCCGACAAGGTAAATGATGACTTCTCCTCCAAGCGACGGCACCTGGCCGAGCTGGCCGCCAAGG
GGAACCTACCTCTGCACCCAGTGAGAGTGGATGACGAGCCGCGGGCCTTCAGCCCTGAGCATGG
CCCTGCCAAGCAGAATGGACAGAAGTCCCGCACCAACAAGATGCCCCCACATCCCCTGGCCTAC
AACTCCACCGCCAGCTTCAAGGGCTGGGACCCCAACGAGCATTCCCTCCGGCGGCAGGCTTATG
GTAACAAGGGCAAGCTTGGCACAGCCGAGTCGGGCTCCAGCGACCCCTTGGGGACTCGCACCCA
GCACTACCCACCCCCACAGCCATACTTCATCACTAACAGCAAAACAGAAGTGACTGTCTGAGCT
TTCCCTACAGGGAGCATCCTGGAGACCATACTCATTTGAGAGAGGCAAAAAAATACCCCTGGCC
CACACCCTCCCTGTCCCCCCCACCCCCGACATGCTCCCCCCCACTCCATGACTCCCCGTTCCAA
CCGACGATAAACCTACTGGTGACGCAGAATCACGCTTTTCTTGGGTCATGCCGAACACATGTCA
GCGGGCAGCTGAGCAAGACGGAAGCAGGGACGTTCAGCAATACAGCAAAGGAGAAACTGAGGCA
CGGCTCTTTCGACTTCAGGCCCCAGGTGGCCAACTCACACGCCCACACCGTGGGGCTAATTTTT
CTTTTCCTCCGGACTTACATCGGACGGATAGAATGGAAAGGAACCCATTCCCTCTGTGACTCGG
TGTTAACCAGTGCTAGATCCACGTGCTACTACAAATCGTTTTGCATTTGCCAGTGATGCACAGC
GCATATTTCAGGAAATACGGGGTCTGCTTATCTGTGAGGTTCCCTACAGCTCCAAAGTCCTGTG
AGTCTAGTTTCCCCTTTGGCTCATCCTGCCTCTTGTACTGGACTCACTTCATCTGACCTTTATC
CCAACGCTGATTAAGGACCTTTCTTGGTCTCTGAATCAACAGAATTCTTTCCCACCCCACCCTC
CTCCGTGTTCCTTCTCTTCTGGGTAAACTTCATCCAGTGAGTTTTGTTGTTAGTTGGGGGGTGT
TGGCAGGAAGGTTGCAGCACGCTCAGGAAGATGTGACAGGATGACGGCAGAGGACATTACTTCT
CTGTCTCATGACCTTCCAGTTGGCTTGGTGAACTGGGACCAAGGGGGTGGGGGCTGGACAAGGA
GGTTTATTCTTAGGCCTCCTCCCAGGAGGGTGGATGGGGATGGAACTCATGGTACTGATGGATC
TGTGGCTGCCGTGTATCAACATGAATCCTGTAGCTATGGTGGGGAGCTTAGAAGAGAGAAACCG
GAACAAAGCAGAGAGGCTGTCCCTGTCCCATCCCGTGCCCTGGCACTAGCCTCTACTTTTTGCC
TTTAGCTATCCCCGACTTCCAACCCAATGGGACCAGAGTCTGACTTCCTTTCGCCTTCCCAGAG
CATCTCAGCCTCCATCCCGCCTTGGGCTCTGCCTGGTACCCCCATCTAACTCCCCCCTCCCCAG
TTTTCCGTGTAAATGGAGCATATTTTATGTGCGAATATTTTAGTAACCGTATGTTCTGCAAGTA
AACCTGTGTTAATACTTGTCAACAACTGCAGAGTTTATGATACCAATAATACTTCCTACAATGA
AGAAAAAAAAAAGACATTTGTTTGTTTTCTAAAAATGTTTATTTGTAAACATGTATTCACTATA
TTAATATGAATTTCTTACCTGGCAATAAAACTGATTATATGTGA

hide sequence

RefSeq Acc Id:

XM_005621527 ⟹ XP_005621584

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	29,801,919 - 30,083,395 (-)	NCBI
Dog10K_Boxer_Tasha	6	31,166,674 - 31,453,618 (-)	NCBI

Sequence:

show sequence

CTGGAGGCGAACGCGGGCTGAGCCGCGCGCCGTGGCCGCGACCACCGAGCGCCCCGCGCCGCCC
CCTGCATGTGCGGCCCGCGGCGGCTCGCAGCCCCCGGCAGCAGCCTCGGCAGCTTCGGCCGCGC
CTCGAGAGGCGGCTGCAGCGGCTCCAGCGGCGGCCGAGCGGCCGAGCCCGGGCTGGGAGACACG
ATGCGCCGCGTCCTCCGGCTGCTCCTCGGCTGCTTCCTCACCGAGCTGTGCGCCCGCGTGTGCC
GGGCGCAGGAGCGAGCGGGGCACGGGCAGCTGGCGCAGCTGGGCGGCGTGGTCGTGCTGGCGGG
GGGCAACCGCTCCGGGGCCGCCTCCGGGGAGGCCGGCGAGGGCGCGGGGGTCTCGGACGCGCCC
CCGACCCGGGCGCCCACGCCGGACTTCTGCCGCGGCTACTTCGATGTCATGGGCCAGTGGGACC
CGCCGTTTAACTGCAGCTCGGGCGACTTTATCTTCTGCTGCGGGACTTGTGGCTTCCGGTTCTG
CTGCACGTTTAAGAAGCGGCGACTGAACCAGAGCACCTGCACCAACTACGACACTCCGCTCTGG
CTCAACACCGGCAAGCCCCCCGCGCGCAAGGACGACCCCCTGCACGACCCCACCAAGGACAAGA
CCAACCTGATCGTTTACATCATCTGCGGGGTGGTGGCCGTCATGGTGCTTGTGGGCATCTTCAC
CAAGCTGGGGCTGGAGAAAGCGCACCGGCCCCAAAGGGAGCACATGTCCAGGGCCCTTGCAGAT
GTCATGAGGCCACAGGGCCACTGCAACACTGACCACATGGAGAGGGACCTCAACATTGTGGTTC
ATGTCCAGCATTATGAAAACATGGATACCAGAACCCCCATAAATAATCTTCACACGACCCAGAT
GAACAACGCGGTGCCCACCTCCCCCTTGCTCCAGCAGATGGGCCATCCGCATTCGTACCCCAGC
CTGGGCCAGATCTCCAACCCCTATGAGCAGCAGCCACCGGGCAAAGAGCTTAACAAGTATGCCT
CCTTGAAGGCAGTCGCCGACAAGGTAAATGATGACTTCTCCTCCAAGCGACGGCACCTGGCCGA
GCTGGCCGCCAAGGGGAACCTACCTCTGCACCCAGTGAGAGTGGATGACGAGCCGCGGGCCTTC
AGCCCTGAGCATGGCCCTGCCAAGCAGAATGGACAGAAGTCCCGCACCAACAAGATGCCCCCAC
ATCCCCTGGCCTACAACTCCACCGCCAGCTTCAAGGGCTGGGACCCCAACGAGCATTCCCTCCG
GCGGCAGGCTTATGGTAACAAGGGCAAGCTTGGCACAGCCGAGTCGGGCTCCAGCGACCCCTTG
GGGACTCGCACCCAGCACTACCCACCCCCACAGCCATACTTCATCACTAACAGCAAAACAGAAG
TGACTGTCTGAGCTTTCCCTACAGGGAGCATCCTGGAGACCATACTCATTTGAGAGAGGCAAAA
AAATACCCCTGGCCCACACCCTCCCTGTCCCCCCCACCCCCGACATGCTCCCCCCCACTCCATG
ACTCCCCGTTCCAACCGACGATAAACCTACTGGTGACGCAGAATCACGCTTTTCTTGGGTCATG
CCGAACACATGTCAGCGGGCAGCTGAGCAAGACGGAAGCAGGGACGTTCAGCAATACAGCAAAG
GAGAAACTGAGGCACGGCTCTTTCGACTTCAGGCCCCAGGTGGCCAACTCACACGCCCACACCG
TGGGGCTAATTTTTCTTTTCCTCCGGACTTACATCGGACGGATAGAATGGAAAGGAACCCATTC
CCTCTGTGACTCGGTGTTAACCAGTGCTAGATCCACGTGCTACTACAAATCGTTTTGCATTTGC
CAGTGATGCACAGCGCATATTTCAGGAAATACGGGGTCTGCTTATCTGTGAGGTTCCCTACAGC
TCCAAAGTCCTGTGAGTCTAGTTTCCCCTTTGGCTCATCCTGCCTCTTGTACTGGACTCACTTC
ATCTGACCTTTATCCCAACGCTGATTAAGGACCTTTCTTGGTCTCTGAATCAACAGAATTCTTT
CCCACCCCACCCTCCTCCGTGTTCCTTCTCTTCTGGGTAAACTTCATCCAGTGAGTTTTGTTGT
TAGTTGGGGGGTGTTGGCAGGAAGGTTGCAGCACGCTCAGGAAGATGTGACAGGATGACGGCAG
AGGACATTACTTCTCTGTCTCATGACCTTCCAGTTGGCTTGGTGAACTGGGACCAAGGGGGTGG
GGGCTGGACAAGGAGGTTTATTCTTAGGCCTCCTCCCAGGAGGGTGGATGGGGATGGAACTCAT
GGTACTGATGGATCTGTGGCTGCCGTGTATCAACATGAATCCTGTAGCTATGGTGGGGAGCTTA
GAAGAGAGAAACCGGAACAAAGCAGAGAGGCTGTCCCTGTCCCATCCCGTGCCCTGGCACTAGC
CTCTACTTTTTGCCTTTAGCTATCCCCGACTTCCAACCCAATGGGACCAGAGTCTGACTTCCTT
TCGCCTTCCCAGAGCATCTCAGCCTCCATCCCGCCTTGGGCTCTGCCTGGTACCCCCATCTAAC
TCCCCCCTCCCCAGTTTTCCGTGTAAATGGAGCATATTTTATGTGCGAATATTTTAGTAACCGT
ATGTTCTGCAAGTAAACCTGTGTTAATACTTGTCAACAACTGCAGAGTTTATGATACCAATAAT
ACTTCCTACAATGAAGAAAAAAAAAAGACATTTGTTTGTTTTCTAAAAATGTTTATTTGTAAAC
ATGTATTCACTATATTAATATGAATTTCTTACCTGGCAATAAAACTGATTATATGTGA

hide sequence

RefSeq Acc Id:

XM_038479094 ⟹ XP_038335022

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	29,783,451 - 30,070,591 (-)	NCBI

RefSeq Acc Id:

XM_038479095 ⟹ XP_038335023

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	29,783,451 - 30,070,591 (-)	NCBI

RefSeq Acc Id:

XM_038540318 ⟹ XP_038396246

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	30,080,489 - 30,368,103 (-)	NCBI

RefSeq Acc Id:

XM_038540319 ⟹ XP_038396247

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	30,080,489 - 30,368,103 (-)	NCBI

RefSeq Acc Id:

XM_038604421 ⟹ XP_038460349

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	29,658,618 - 29,945,558 (-)	NCBI

RefSeq Acc Id:

XM_038604423 ⟹ XP_038460351

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	29,658,618 - 29,945,558 (-)	NCBI

RefSeq Acc Id:

XM_038669123 ⟹ XP_038525051

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	29,968,383 - 30,255,994 (-)	NCBI

RefSeq Acc Id:

XM_038669124 ⟹ XP_038525052

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	29,968,383 - 30,255,994 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003434901	(Get FASTA)	NCBI Sequence Viewer
	XP_005621584	(Get FASTA)	NCBI Sequence Viewer
	XP_038335022	(Get FASTA)	NCBI Sequence Viewer
	XP_038335023	(Get FASTA)	NCBI Sequence Viewer
	XP_038396246	(Get FASTA)	NCBI Sequence Viewer
	XP_038396247	(Get FASTA)	NCBI Sequence Viewer
	XP_038460349	(Get FASTA)	NCBI Sequence Viewer
	XP_038460351	(Get FASTA)	NCBI Sequence Viewer
	XP_038525051	(Get FASTA)	NCBI Sequence Viewer
	XP_038525052	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000027790.3
	ENSCAFP00000036580.2
	ENSCAFP00000069606.1
	ENSCAFP00030021972.1
	ENSCAFP00030021995.1
	ENSCAFP00040005921.1
	ENSCAFP00040005930.1
	ENSCAFP00845016137
	ENSCAFP00845016137.1
	ENSCAFP00845016151.1
	ENSCAFP00845016208.1

RefSeq Acc Id:

XP_005621584 ⟸ XM_005621527

- Peptide Label:

isoform X2

- Sequence:

show sequence

MCGPRRLAAPGSSLGSFGRASRGGCSGSSGGRAAEPGLGDTMRRVLRLLLGCFLTELCARVCRA
QERAGHGQLAQLGGVVVLAGGNRSGAASGEAGEGAGVSDAPPTRAPTPDFCRGYFDVMGQWDPP
FNCSSGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKDDPLHDPTKDKTN
LIVYIICGVVAVMVLVGIFTKLGLEKAHRPQREHMSRALADVMRPQGHCNTDHMERDLNIVVHV
QHYENMDTRTPINNLHTTQMNNAVPTSPLLQQMGHPHSYPSLGQISNPYEQQPPGKELNKYASL
KAVADKVNDDFSSKRRHLAELAAKGNLPLHPVRVDDEPRAFSPEHGPAKQNGQKSRTNKMPPHP
LAYNSTASFKGWDPNEHSLRRQAYGNKGKLGTAESGSSDPLGTRTQHYPPPQPYFITNSKTEVT
V

hide sequence

RefSeq Acc Id:	XP_003434901 ⟸ XM_003434853
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0PYU9 (UniProtKB/TrEMBL), A0A8P0SRI3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCGPRRLAAPGSSLGSFGRASRGGCSGSSGGRAAEPGLGDTMRRVLRLLLGCFLTELCARVCRA QERAGHGQLAQLGGVVVLAGGNRSGAASGEAGEGAGVSDAPPTRAPTPDFCRGYFDVMGQWDPP FNCSSGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKDDPLHDPTKDKTN LIVYIICGVVAVMVLVGIFTKLGLEKAHRPQREHMSRALADVMRPQGHCNTDHMERDLNIVVHV QHYENMDTRTPINNLHTTQMNNAVPTSPLLQQMGHPHSYPSLGQISNPYEQQPPGKELNKYASL KAVGSSDGDWAVATLKSPKADKVNDDFSSKRRHLAELAAKGNLPLHPVRVDDEPRAFSPEHGPA KQNGQKSRTNKMPPHPLAYNSTASFKGWDPNEHSLRRQAYGNKGKLGTAESGSSDPLGTRTQHY PPPQPYFITNSKTEVTV hide sequence

RefSeq Acc Id:

ENSCAFP00000036580 ⟸ ENSCAFT00000044843

RefSeq Acc Id:

ENSCAFP00000027790 ⟸ ENSCAFT00000029902

RefSeq Acc Id:	XP_038335023 ⟸ XM_038479095
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038335022 ⟸ XM_038479094
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038460351 ⟸ XM_038604423
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038460349 ⟸ XM_038604421
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038525052 ⟸ XM_038669124
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038525051 ⟸ XM_038669123
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0N5W3 (UniProtKB/TrEMBL), A0A8I3NFV7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038396247 ⟸ XM_038540319
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038396246 ⟸ XM_038540318
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0N5W3 (UniProtKB/TrEMBL), A0A8I3NFV7 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845016137 ⟸ ENSCAFT00845020572

RefSeq Acc Id:

ENSCAFP00845016151 ⟸ ENSCAFT00845020589

RefSeq Acc Id:

ENSCAFP00845016208 ⟸ ENSCAFT00845020663

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000018839	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030013607	UniProtKB/TrEMBL
	ENSCAFG00040003586	UniProtKB/TrEMBL
	ENSCAFG00845011592	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000029902.5	UniProtKB/TrEMBL
	ENSCAFT00000044843.3	UniProtKB/TrEMBL
	ENSCAFT00000095025.1	UniProtKB/TrEMBL
	ENSCAFT00030025168.1	UniProtKB/TrEMBL
	ENSCAFT00030025192.1	UniProtKB/TrEMBL
	ENSCAFT00040006828.1	UniProtKB/TrEMBL
	ENSCAFT00040006839.1	UniProtKB/TrEMBL
	ENSCAFT00845020572	ENTREZGENE
	ENSCAFT00845020572.1	UniProtKB/TrEMBL
	ENSCAFT00845020589.1	UniProtKB/TrEMBL
	ENSCAFT00845020663.1	UniProtKB/TrEMBL
InterPro	Shisa	UniProtKB/TrEMBL
NCBI Gene	SHISA9	ENTREZGENE
PANTHER	PROTEIN SHISA-9	UniProtKB/TrEMBL
	PTHR31774	UniProtKB/TrEMBL
Pfam	Shisa	UniProtKB/TrEMBL
UniProt	A0A8C0N5W3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0PYU9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0Q3F5_CANLF	UniProtKB/TrEMBL
	A0A8I3NFV7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NIJ3_CANLF	UniProtKB/TrEMBL
	A0A8I3NJC7_CANLF	UniProtKB/TrEMBL
	A0A8P0SRI3	ENTREZGENE
	A0A8P0TM87_CANLF	UniProtKB/TrEMBL
UniProt Secondary	A0A8P0SRI3	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar