SHISA9 (shisa family member 9) - Rat Genome Database

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Gene: SHISA9 (shisa family member 9) Sus scrofa
Analyze
Symbol: SHISA9
Name: shisa family member 9
RGD ID: 14249296
Description: ENCODES a protein that exhibits PDZ domain binding (inferred); INVOLVED IN regulation of short-term neuronal synaptic plasticity (inferred); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein shisa-9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl329,969,122 - 30,272,943 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1329,966,481 - 30,272,800 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2331,242,556 - 31,253,704 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SHISA9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl329,969,122 - 30,272,943 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1329,966,481 - 30,272,800 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2331,242,556 - 31,253,704 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SHISA9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381612,901,598 - 13,563,017 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1612,901,598 - 13,240,416 (+)EnsemblGRCh38hg38GRCh38
GRCh371612,995,455 - 13,334,273 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361613,083,744 - 13,236,767 (+)NCBINCBI36Build 36hg18NCBI36
Celera1613,170,353 - 13,509,146 (+)NCBICelera
Cytogenetic Map16p13.12NCBI
HuRef1612,912,276 - 13,251,427 (+)NCBIHuRef
CHM1_11612,995,403 - 13,332,162 (+)NCBICHM1_1
T2T-CHM13v2.01612,938,717 - 13,600,679 (+)NCBIT2T-CHM13v2.0
Shisa9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391611,801,457 - 12,088,768 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1611,801,977 - 12,088,766 (+)EnsemblGRCm39 Ensembl
GRCm381611,983,593 - 12,270,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1611,984,113 - 12,270,902 (+)EnsemblGRCm38mm10GRCm38
MGSCv371611,984,206 - 12,270,997 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361611,897,726 - 12,183,527 (+)NCBIMGSCv36mm8
Celera1612,611,680 - 12,899,218 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map166.89NCBI
Shisa9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8103,842,625 - 4,135,618 (-)NCBIGRCr8
mRatBN7.2103,335,616 - 3,629,334 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl103,337,979 - 3,627,773 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0102,777,675 - 3,072,842 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0101,658,327 - 1,940,603 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4103,152,124 - 3,177,530 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera102,370,352 - 2,661,832 (-)NCBICelera
Cytogenetic Map10q11NCBI
Shisa9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554425,540,779 - 5,816,865 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554425,537,372 - 5,817,076 (-)NCBIChiLan1.0ChiLan1.0
SHISA9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21813,441,011 - 14,105,824 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11617,211,861 - 17,880,067 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01611,833,062 - 12,494,972 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11613,258,949 - 13,596,352 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1613,258,945 - 13,591,356 (+)Ensemblpanpan1.1panPan2
SHISA9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1629,801,919 - 30,083,397 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl629,801,904 - 30,083,420 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha631,166,674 - 31,453,618 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0629,968,383 - 30,255,994 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl629,971,854 - 30,256,117 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1629,783,451 - 30,070,591 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0629,658,618 - 29,945,558 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0630,080,489 - 30,368,103 (-)NCBIUU_Cfam_GSD_1.0
Shisa9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344113,397,030 - 113,643,014 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365011,494,885 - 1,737,439 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365011,491,869 - 1,738,118 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHISA9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1512,347,832 - 12,687,382 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606817,384,857 - 17,755,670 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Shisa9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247825,214,341 - 5,500,967 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247825,210,878 - 5,501,438 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SHISA9
7105 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system nervous system respiratory system
High
Medium 11
Low 1 2 10 2
Below cutoff 1 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000052713   ⟹   ENSSSCP00000039351
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl329,969,122 - 30,272,943 (-)Ensembl
RefSeq Acc Id: XM_021086587   ⟹   XP_020942246
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1329,966,481 - 30,272,800 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086588   ⟹   XP_020942247
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1329,966,481 - 30,272,800 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002342419
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1329,966,481 - 30,272,800 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020942246 (Get FASTA)   NCBI Sequence Viewer  
  XP_020942247 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000039351
  ENSSSCP00000039351.3
  ENSSSCP00005009544.1
Reference Protein Sequences
RefSeq Acc Id: XP_020942247   ⟸   XM_021086588
- Peptide Label: isoform X2
- UniProtKB: A0A8D0I8Q7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942246   ⟸   XM_021086587
- Peptide Label: isoform X1
- UniProtKB: A0A287A5Y4 (UniProtKB/TrEMBL),   A0A8D0I8Q7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000039351   ⟸   ENSSSCT00000052713


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032878 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005010376 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000052713 ENTREZGENE
  ENSSSCT00000052713.3 UniProtKB/TrEMBL
  ENSSSCT00005015975.1 UniProtKB/TrEMBL
InterPro Shisa UniProtKB/TrEMBL
NCBI Gene SHISA9 ENTREZGENE
PANTHER PROTEIN SHISA-9 UniProtKB/TrEMBL
  PTHR31774 UniProtKB/TrEMBL
Pfam Shisa UniProtKB/TrEMBL
UniProt A0A287A5Y4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0I8Q7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:110717 ENTREZGENE