RWDD2B (RWD domain containing 2B)

Gene: RWDD2B (RWD domain containing 2B) Chlorocebus sabaeus

Analyze

Symbol:

RWDD2B

Name:

RWD domain containing 2B

RGD ID:

18623840

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

RWD domain-containing protein 2B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	63,206,863 - 63,213,752 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	63,206,876 - 63,216,793 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	5,791,926 - 5,799,949 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

RWDD2B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	63,206,863 - 63,213,752 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	63,206,876 - 63,216,793 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	5,791,926 - 5,799,949 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

RWDD2B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	29,004,384 - 29,019,349 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	29,004,384 - 29,019,360 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	30,376,705 - 30,391,670 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	29,299,951 - 29,313,563 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	21	29,299,952 - 29,313,554	NCBI
Celera	21	15,560,812 - 15,575,163 (-)	NCBI		Celera
Cytogenetic Map	21	q21.3	NCBI
HuRef	21	15,782,744 - 15,798,035 (-)	NCBI		HuRef
CHM1_1	21	29,940,417 - 29,954,042 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	27,367,085 - 27,382,803 (-)	NCBI		T2T-CHM13v2.0

Rwdd2b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	87,230,219 - 87,237,480 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	87,230,295 - 87,237,461 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	87,433,331 - 87,440,592 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	87,433,407 - 87,440,573 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	87,433,576 - 87,440,837 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	87,322,605 - 87,329,742 (-)	NCBI		MGSCv36	mm8
Celera	16	87,625,667 - 87,629,850 (-)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	49.53	NCBI

Rwdd2b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	40,152,139 - 40,166,328 (-)	NCBI		GRCr8
mRatBN7.2	11	26,665,877 - 26,677,986 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	26,665,877 - 26,674,603 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	35,363,925 - 35,372,538 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	28,064,170 - 28,072,783 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	27,253,104 - 27,261,717 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	27,085,708 - 27,094,364 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	27,085,711 - 27,094,364 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	30,711,156 - 30,719,812 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	27,189,244 - 27,197,900 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	27,190,414 - 27,192,840 (-)	NCBI
Celera	11	26,418,325 - 26,426,990 (-)	NCBI		Celera
Cytogenetic Map	11	q11	NCBI

Rwdd2b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	28,359,487 - 28,371,678 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	28,363,476 - 28,371,491 (-)	NCBI	ChiLan1.0	ChiLan1.0

RWDD2B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	25,187,346 - 25,205,772 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	20,046,181 - 20,063,361 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	15,436,922 - 15,451,135 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	28,825,419 - 28,838,801 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	28,825,419 - 28,838,801 (-)	Ensembl	panpan1.1		panPan2

RWDD2B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	24,017,573 - 24,034,230 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	24,018,397 - 24,031,147 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	24,010,513 - 24,027,355 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	24,131,144 - 24,148,011 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	24,131,418 - 24,144,988 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	24,081,547 - 24,098,464 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	24,083,221 - 24,100,166 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	24,554,706 - 24,571,592 (-)	NCBI		UU_Cfam_GSD_1.0

Rwdd2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	24,466,941 - 24,478,806 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	12,991,167 - 13,001,053 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	12,989,064 - 13,000,582 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LTN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	192,363,970 - 192,373,946 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	192,359,972 - 192,374,354 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	202,667,551 - 202,676,583 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Rwdd2b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	16,994,234 - 17,004,549 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624745	16,998,155 - 17,004,825 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	20		20
Low	16	20	40
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007965730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037990644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000007208 ⟹ ENSCSAP00000005395

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	2	63,206,876 - 63,216,793 (+)	Ensembl

RefSeq Acc Id:

XM_007965730 ⟹ XP_007963921

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	2	63,206,863 - 63,213,752 (+)	NCBI
Vero_WHO_p1.0	NW_023666071	5,791,926 - 5,799,949 (+)	NCBI

Sequence:

show sequence

CCGCGCGCCCTGTTTTTTTCTGATAGGCCGCTAGGTGAGGCGGTTTGTGAGTTTTGGGTCGCAG
TATACTAGAATTTTGAGGTTTCCTTCCGGTGAAAATTGAGCTGTTCGTGCAGCCATGGGACCCG
GGTTACAGCAGTGAGGGGGCCGCGACTCAAGAAACTTACACATGTCCAAAAATGATTGAGATAG
AGCAGGCGGAGGCCCAGCTTGCTGAGTTAGACCTGCTAGCCAGTATGTTCCCTGGTGAGAATGA
GCTCATAGTAAATGACCAACTGGCTGTAGCAGAACTGAAAGATTGTATTGAAAAGAAGACAATG
GAGGGGCGATCTTCAAAAGTTTACTTTACTATCAATATGAACCTGGATGTATCTGAGGAAGCAA
TGGCGATGTTTTCTCTGGCCTGTATTCTTCCTTTTAAATACCCAGCAGTTCTGCCTGAAATTAC
TGTCAGATCAGTAATATTGAGTAGATCCCAGCAGACTCAGCTGAACACAGATCTGACTGCATTC
CTGCAAAAACATTGTCATGGAGATGTTTGTATACTGAATGCCACGGAGTGGGTTAGAGAACACG
CGTCTGGCTATGTCAGCAGAGATACTTCATCTTCACCCACCACAGGAAGCACAGTCCAGTCAGT
TGACCTCATCTTCACAAGACTCTGGATCTACAGCCATCATATCTACAACAAATGCAAAAGAAAG
AATATTCTAGAGTGGGCAAAGGAGCTTTCCCTGTCTGGGTTTAGCATGCCTGGAAAACCTGGTG
TTGTTTGTGTGGAAGGCCCACAAAGTGCCTGTGAAGAATTCTGGTCAAGACTCAGAAAATTAAA
CTGGAAGAGAATTTTAATCCGCCATCGAGAAGACGTTCCTTTTGATGGTACAAATGATGAAATG
CAAAGACAAAGGAAATTTTCCATTTTTGAAGAAAAAGTGTTCAGTGTTAATGGAGCCAGGGGAA
ACCACATGGACTTTGGTCAGCTCTATCAGTTCTTAAATGCCAAAGGATGTGGGGATGTTTTCCA
GATGTTTTTTGGTGTAGAAGGACAATGACAGTAAGAGTAGTTGAAAGTATCTTGTCACTGTTGG
CCTTTTGATTTTTTTTTCCCACTTTTTCTTGAAAGATTAAGTAATTTTATTTTAGTTCCATTCT
AGAATGTTGGGGAGTGGGGGACAAGAAAAAATAGTATAGCTGAAATGCATCTGTTAAAAATGTC
ATGATTGAAAGCAGAACTGAGTTTTAAATTACAACCTTAAAATTGTTGTTAGGTATTTCTTCAC
CTATCAGCTGCCCATTTTGAAAAAGAAATGATCCACAAAGGTGATGTTGGTGCTCCAATTTGCC
AGCCATTCCCAACCCCCTTCTCCCTTACCTGCCTTCACTAAAGAACCCAGAAAAGCTAATTGCT
CCCCTTTCAGCCTCTGTTGCAACTAACAACTCTCAGTGGCCTCAGGACACACCTTTGGCCTTGG
GAATTCTGGGAAAACTTTTGCTTCCTGATTAAAGAAACATATGCAGCTAG

hide sequence

RefSeq Acc Id:

XM_037990644 ⟹ XP_037846572

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666071	5,791,926 - 5,798,235 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007963921	(Get FASTA)	NCBI Sequence Viewer
	XP_037846572	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000005395.1

RefSeq Acc Id:	XP_007963921 ⟸ XM_007965730
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9R9V6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000005395 ⟸ ENSCSAT00000007208

RefSeq Acc Id:	XP_037846572 ⟸ XM_037990644
- Peptide Label:	isoform X2

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000009142	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000007208.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.110.10	UniProtKB/TrEMBL
InterPro	DUF1115	UniProtKB/TrEMBL
	RWD-domain	UniProtKB/TrEMBL
	UBQ-conjugating_enzyme/RWD	UniProtKB/TrEMBL
	UCP038021_RWD	UniProtKB/TrEMBL
KEGG Report	csab:103217573	UniProtKB/TrEMBL
NCBI Gene	RWDD2B	ENTREZGENE
PANTHER	PTHR15955	UniProtKB/TrEMBL
	RWD DOMAIN-CONTAINING PROTEIN 2B-RELATED	UniProtKB/TrEMBL
Pfam	DUF1115	UniProtKB/TrEMBL
	RWD	UniProtKB/TrEMBL
PIRSF	UCP038021_RWDD2	UniProtKB/TrEMBL
PROSITE	RWD	UniProtKB/TrEMBL
SMART	RWD	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54495	UniProtKB/TrEMBL
UniProt	A0A0D9R9V6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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