Kctd17 (potassium channel tetramerisation domain containing 17) - Rat Genome Database

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Gene: Kctd17 (potassium channel tetramerisation domain containing 17) Mus musculus
Analyze
Symbol: Kctd17
Name: potassium channel tetramerisation domain containing 17
RGD ID: 1623939
MGI Page MGI
Description: Predicted to enable cullin family protein binding activity; identical protein binding activity; and ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in endoplasmic reticulum calcium ion homeostasis; positive regulation of cilium assembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in myoclonic dystonia 26. Orthologous to human KCTD17 (potassium channel tetramerization domain containing 17).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2900008M13Rik; AA414907; AW742389; BTB/POZ domain-containing protein KCTD17; N28155
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,312,578 - 78,323,503 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,312,764 - 78,323,503 (+)EnsemblGRCm39 Ensembl
GRCm381578,428,564 - 78,439,303 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,428,564 - 78,439,303 (+)EnsemblGRCm38mm10GRCm38
MGSCv371578,259,058 - 78,269,733 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,255,883 - 78,266,558 (+)NCBIMGSCv36mm8
Celera1579,891,317 - 79,902,007 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.49NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:21677750  
PMID:21873635   PMID:28859855   PMID:28923932   PMID:36402191   PMID:36868076   PMID:38355793  


Genomics

Comparative Map Data
Kctd17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,312,578 - 78,323,503 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,312,764 - 78,323,503 (+)EnsemblGRCm39 Ensembl
GRCm381578,428,564 - 78,439,303 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,428,564 - 78,439,303 (+)EnsemblGRCm38mm10GRCm38
MGSCv371578,259,058 - 78,269,733 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,255,883 - 78,266,558 (+)NCBIMGSCv36mm8
Celera1579,891,317 - 79,902,007 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.49NCBI
KCTD17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,051,742 - 37,063,390 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,051,739 - 37,063,390 (+)EnsemblGRCh38hg38GRCh38
GRCh372237,447,782 - 37,459,430 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,777,562 - 35,789,376 (+)NCBINCBI36Build 36hg18NCBI36
Build 342235,772,115 - 35,783,930NCBI
Celera2221,249,109 - 21,260,760 (+)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2220,413,006 - 20,424,657 (+)NCBIHuRef
CHM1_12237,407,284 - 37,418,934 (+)NCBICHM1_1
T2T-CHM13v2.02237,511,340 - 37,522,988 (+)NCBIT2T-CHM13v2.0
Kctd17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,859,556 - 111,891,869 (+)NCBIGRCr8
mRatBN7.27109,979,060 - 110,009,091 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,979,060 - 110,008,927 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,729,303 - 111,740,076 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,952,841 - 113,963,614 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,920,919 - 113,931,693 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,647,301 - 119,658,148 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,647,375 - 119,658,148 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,637,805 - 119,667,724 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47116,379,781 - 116,390,554 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17116,409,146 - 116,424,232 (+)NCBI
Celera7106,317,169 - 106,328,014 (+)NCBICelera
Cytogenetic Map7q34NCBI
Kctd17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,567,865 - 23,578,292 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,568,540 - 23,578,292 (+)NCBIChiLan1.0ChiLan1.0
KCTD17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,907,981 - 46,919,637 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,596,538 - 49,608,191 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,965,397 - 17,977,048 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,801,371 - 35,813,005 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,801,379 - 35,813,005 (+)Ensemblpanpan1.1panPan2
KCTD17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,439,280 - 27,447,961 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,443,180 - 27,447,712 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,393,902 - 27,403,731 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,231,431 - 28,241,252 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11027,953,014 - 27,962,841 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,261,611 - 28,271,437 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,439,515 - 28,449,334 (-)NCBIUU_Cfam_GSD_1.0
Kctd17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,839,758 - 10,849,359 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364923,850,848 - 3,859,768 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364923,850,172 - 3,859,786 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCTD17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,707,354 - 10,718,959 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1510,707,351 - 10,718,968 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,307,135 - 8,318,307 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,757,249 - 19,769,252 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045106,059,859 - 106,079,168 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kctd17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475210,729,344 - 10,738,428 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475210,728,872 - 10,738,429 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kctd17
451 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2236
Count of miRNA genes:613
Interacting mature miRNAs:749
Transcripts:ENSMUST00000089414, ENSMUST00000159771, ENSMUST00000160916, ENSMUST00000161016, ENSMUST00000162321, ENSMUST00000162517, ENSMUST00000162605, ENSMUST00000162808, ENSMUST00000166142
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157237245979899178Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
13442492Mecth2_mmechanosensation threshold 2 (mouse)157466284979387201Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
15092080Igly7_mIgG glycosylation 7, GP10 (mouse)157779491982674156Mouse

Markers in Region
AW742389  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381578,438,053 - 78,438,308UniSTSGRCm38
MGSCv371578,268,483 - 78,268,738UniSTSGRCm37
Celera1579,900,757 - 79,901,012UniSTS
Cytogenetic Map15E1UniSTS
Whitehead/MRC_RH15694.67UniSTS
RH124537  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371578,269,304 - 78,269,504UniSTSGRCm37
Celera1579,901,578 - 79,901,778UniSTS
Cytogenetic Map15E1UniSTS
RH125066  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381578,439,057 - 78,439,276UniSTSGRCm38
MGSCv371578,269,487 - 78,269,706UniSTSGRCm37
Celera1579,901,761 - 79,901,980UniSTS
Cytogenetic Map15E1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001289671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_110357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK013500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL590144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000089414   ⟹   ENSMUSP00000086835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,312,828 - 78,323,109 (+)Ensembl
GRCm38.p6 Ensembl1578,428,628 - 78,438,909 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159771   ⟹   ENSMUSP00000125574
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,312,862 - 78,323,043 (+)Ensembl
GRCm38.p6 Ensembl1578,428,662 - 78,438,843 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160916
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,317,187 - 78,321,934 (+)Ensembl
GRCm38.p6 Ensembl1578,432,987 - 78,437,734 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,312,891 - 78,320,060 (+)Ensembl
GRCm38.p6 Ensembl1578,428,691 - 78,435,860 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162321   ⟹   ENSMUSP00000125680
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,312,996 - 78,322,847 (+)Ensembl
GRCm38.p6 Ensembl1578,428,796 - 78,438,647 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162517   ⟹   ENSMUSP00000124290
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,312,764 - 78,322,697 (+)Ensembl
GRCm38.p6 Ensembl1578,428,564 - 78,438,497 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162605
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,318,182 - 78,321,779 (+)Ensembl
GRCm38.p6 Ensembl1578,433,982 - 78,437,579 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162808   ⟹   ENSMUSP00000125421
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,314,286 - 78,322,780 (+)Ensembl
GRCm38.p6 Ensembl1578,430,086 - 78,438,580 (+)Ensembl
RefSeq Acc Id: ENSMUST00000166142   ⟹   ENSMUSP00000133210
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,312,764 - 78,323,503 (+)Ensembl
GRCm38.p6 Ensembl1578,428,564 - 78,439,303 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229290   ⟹   ENSMUSP00000155643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,313,890 - 78,322,789 (+)Ensembl
GRCm38.p6 Ensembl1578,429,690 - 78,438,589 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229622   ⟹   ENSMUSP00000155227
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,314,251 - 78,322,827 (+)Ensembl
GRCm38.p6 Ensembl1578,430,051 - 78,438,627 (+)Ensembl
RefSeq Acc Id: NM_001289671   ⟹   NP_001276600
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,312,860 - 78,323,503 (+)NCBI
GRCm381578,428,564 - 78,439,303 (+)NCBI
Celera1579,891,253 - 79,902,007 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001289672   ⟹   NP_001276601
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,312,860 - 78,323,503 (+)NCBI
GRCm381578,428,564 - 78,439,303 (+)NCBI
Celera1579,891,253 - 79,902,007 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001289673   ⟹   NP_001276602
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,312,860 - 78,323,503 (+)NCBI
GRCm381578,428,564 - 78,439,303 (+)NCBI
Celera1579,891,253 - 79,902,007 (+)NCBI
Sequence:
RefSeq Acc Id: NR_110357
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,312,764 - 78,323,503 (+)NCBI
GRCm381578,428,564 - 78,439,303 (+)NCBI
Celera1579,891,253 - 79,902,007 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006521460   ⟹   XP_006521523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,312,578 - 78,323,503 (+)NCBI
GRCm381578,428,607 - 78,439,303 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006521461   ⟹   XP_006521524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,312,578 - 78,323,489 (+)NCBI
GRCm381578,428,607 - 78,439,289 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248792   ⟹   XP_030104652
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,312,578 - 78,323,153 (+)NCBI
GRCm381578,428,599 - 78,438,388 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159611   ⟹   XP_036015504
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,312,578 - 78,323,503 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001781568
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,312,578 - 78,323,489 (+)NCBI
GRCm381578,428,607 - 78,439,289 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001781569
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,312,578 - 78,323,503 (+)NCBI
GRCm381578,428,607 - 78,439,303 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938873
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,312,578 - 78,323,503 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938874
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,312,578 - 78,323,503 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_006521523   ⟸   XM_006521460
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006521524   ⟸   XM_006521461
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001276600   ⟸   NM_001289671
- Peptide Label: isoform 1
- UniProtKB: E0CYD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276601   ⟸   NM_001289672
- Peptide Label: isoform 2
- UniProtKB: F6SYN4 (UniProtKB/TrEMBL),   A6H697 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276602   ⟸   NM_001289673
- Peptide Label: isoform 3
- UniProtKB: E0CZ97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030104652   ⟸   XM_030248792
- Peptide Label: isoform X4
RefSeq Acc Id: ENSMUSP00000125574   ⟸   ENSMUST00000159771
RefSeq Acc Id: ENSMUSP00000133210   ⟸   ENSMUST00000166142
RefSeq Acc Id: ENSMUSP00000086835   ⟸   ENSMUST00000089414
RefSeq Acc Id: ENSMUSP00000125421   ⟸   ENSMUST00000162808
RefSeq Acc Id: ENSMUSP00000125680   ⟸   ENSMUST00000162321
RefSeq Acc Id: ENSMUSP00000124290   ⟸   ENSMUST00000162517
RefSeq Acc Id: ENSMUSP00000155227   ⟸   ENSMUST00000229622
RefSeq Acc Id: ENSMUSP00000155643   ⟸   ENSMUST00000229290
RefSeq Acc Id: XP_036015504   ⟸   XM_036159611
- Peptide Label: isoform X2
Protein Domains
BTB   Potassium channel tetramerisation-type BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E0CYQ0-F1-model_v2 AlphaFold E0CYQ0 1-296 view protein structure

Promoters
RGD ID:6826122
Promoter ID:MM_KWN:18983
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   MEF_B4
Transcripts:NM_001081367,   UC007WPH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361578,258,919 - 78,259,419 (+)MPROMDB
RGD ID:6847204
Promoter ID:MM_ACW:18599
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day4,   MEF_B4,   MEF_B6
Transcripts:KCTD17.GSEP07,   KCTD17.HSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361578,259,476 - 78,259,976 (+)MPROMDB
RGD ID:8684264
Promoter ID:EPDNEW_M20162
Type:initiation region
Name:Kctd17_1
Description:Mus musculus potassium channel tetramerisation domain containing17 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381578,428,660 - 78,428,720EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920094 AgrOrtholog
Ensembl Genes ENSMUSG00000033287 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000089414.12 UniProtKB/TrEMBL
  ENSMUST00000159771 ENTREZGENE
  ENSMUST00000159771.8 UniProtKB/TrEMBL
  ENSMUST00000162321.8 UniProtKB/TrEMBL
  ENSMUST00000162517 ENTREZGENE
  ENSMUST00000162517.9 UniProtKB/TrEMBL
  ENSMUST00000162808.2 UniProtKB/TrEMBL
  ENSMUST00000166142 ENTREZGENE
  ENSMUST00000166142.11 UniProtKB/TrEMBL
  ENSMUST00000229290.2 UniProtKB/TrEMBL
  ENSMUST00000229622.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.2000 UniProtKB/TrEMBL
  6.10.140.750 UniProtKB/TrEMBL
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/TrEMBL
MGD MGI:1920094 ENTREZGENE
NCBI Gene 72844 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD17 UniProtKB/TrEMBL
  POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam K_tetra UniProtKB/TrEMBL
PhenoGen Kctd17 PhenoGen
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
UniProt A0A2R8VHM0_MOUSE UniProtKB/TrEMBL
  A0A2R8VKL1_MOUSE UniProtKB/TrEMBL
  A6H697 ENTREZGENE, UniProtKB/TrEMBL
  E0CYD2 ENTREZGENE, UniProtKB/TrEMBL
  E0CYQ0_MOUSE UniProtKB/TrEMBL
  E0CZ97 ENTREZGENE, UniProtKB/TrEMBL
  F6SYN4 ENTREZGENE
  F7B6A4_MOUSE UniProtKB/TrEMBL
  F7C1U0_MOUSE UniProtKB/TrEMBL
UniProt Secondary F6SYN4 UniProtKB/TrEMBL