Kctd17 (potassium channel tetramerization domain containing 17) - Rat Genome Database

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Gene: Kctd17 (potassium channel tetramerization domain containing 17) Rattus norvegicus
Analyze
Symbol: Kctd17
Name: potassium channel tetramerization domain containing 17
RGD ID: 1311154
Description: Predicted to enable cullin family protein binding activity; identical protein binding activity; and ubiquitin ligase-substrate adaptor activity. Predicted to be involved in endoplasmic reticulum calcium ion homeostasis; positive regulation of cilium assembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in endoplasmic reticulum. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in myoclonic dystonia 26. Orthologous to human KCTD17 (potassium channel tetramerization domain containing 17); INTERACTS WITH bisphenol A; Cuprizon; (1->4)-beta-D-glucan (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BTB/POZ domain-containing protein KCTD17; hypothetical protein LOC300317; LOC300317; potassium channel tetramerisation domain containing 17; RGD1311154; similar to hypothetical protein FLJ12242
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,859,556 - 111,891,869 (+)NCBIGRCr8
mRatBN7.27109,979,060 - 110,009,091 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,979,060 - 110,008,927 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,729,303 - 111,740,076 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,952,841 - 113,963,614 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,920,919 - 113,931,693 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,647,301 - 119,658,148 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,647,375 - 119,658,148 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,637,805 - 119,667,724 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47116,379,781 - 116,390,554 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17116,409,146 - 116,424,232 (+)NCBI
Celera7106,317,169 - 106,328,014 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16189514   PMID:25270598   PMID:25983243  


Genomics

Comparative Map Data
Kctd17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,859,556 - 111,891,869 (+)NCBIGRCr8
mRatBN7.27109,979,060 - 110,009,091 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,979,060 - 110,008,927 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,729,303 - 111,740,076 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,952,841 - 113,963,614 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,920,919 - 113,931,693 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,647,301 - 119,658,148 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,647,375 - 119,658,148 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,637,805 - 119,667,724 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47116,379,781 - 116,390,554 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17116,409,146 - 116,424,232 (+)NCBI
Celera7106,317,169 - 106,328,014 (+)NCBICelera
Cytogenetic Map7q34NCBI
KCTD17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,051,742 - 37,063,390 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,051,739 - 37,063,390 (+)EnsemblGRCh38hg38GRCh38
GRCh372237,447,782 - 37,459,430 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,777,562 - 35,789,376 (+)NCBINCBI36Build 36hg18NCBI36
Build 342235,772,115 - 35,783,930NCBI
Celera2221,249,109 - 21,260,760 (+)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2220,413,006 - 20,424,657 (+)NCBIHuRef
CHM1_12237,407,284 - 37,418,934 (+)NCBICHM1_1
T2T-CHM13v2.02237,511,340 - 37,522,988 (+)NCBIT2T-CHM13v2.0
Kctd17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,312,578 - 78,323,503 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,312,764 - 78,323,503 (+)EnsemblGRCm39 Ensembl
GRCm381578,428,564 - 78,439,303 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,428,564 - 78,439,303 (+)EnsemblGRCm38mm10GRCm38
MGSCv371578,259,058 - 78,269,733 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,255,883 - 78,266,558 (+)NCBIMGSCv36mm8
Celera1579,891,317 - 79,902,007 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.49NCBI
Kctd17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,567,865 - 23,578,292 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,568,540 - 23,578,292 (+)NCBIChiLan1.0ChiLan1.0
KCTD17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,907,981 - 46,919,637 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,596,538 - 49,608,191 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,965,397 - 17,977,048 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,801,371 - 35,813,005 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,801,379 - 35,813,005 (+)Ensemblpanpan1.1panPan2
KCTD17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,439,280 - 27,447,961 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,443,180 - 27,447,712 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,393,902 - 27,403,731 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,231,431 - 28,241,252 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11027,953,014 - 27,962,841 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,261,611 - 28,271,437 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,439,515 - 28,449,334 (-)NCBIUU_Cfam_GSD_1.0
Kctd17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,839,758 - 10,849,359 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364923,850,848 - 3,859,768 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364923,850,172 - 3,859,786 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCTD17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,707,354 - 10,718,959 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1510,707,351 - 10,718,968 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,307,135 - 8,318,307 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,757,249 - 19,769,252 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045106,059,859 - 106,079,168 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kctd17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475210,729,344 - 10,738,428 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475210,728,872 - 10,738,429 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kctd17
165 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:328
Count of miRNA genes:170
Interacting mature miRNAs:207
Transcripts:ENSRNOT00000046563
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 24 4 4 1 4 74 27 32 1
Low 1 19 53 37 18 37 6 9 8 9 10 6
Below cutoff 2 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000046563   ⟹   ENSRNOP00000044649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7109,979,060 - 109,989,833 (+)Ensembl
Rnor_6.0 Ensembl7119,647,375 - 119,658,148 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094378   ⟹   ENSRNOP00000083040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7109,979,060 - 110,008,927 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105459   ⟹   ENSRNOP00000081151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7109,979,060 - 109,989,834 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114366   ⟹   ENSRNOP00000086871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7109,979,060 - 109,989,834 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117512   ⟹   ENSRNOP00000093901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7109,979,060 - 109,989,834 (+)Ensembl
RefSeq Acc Id: NM_001134529   ⟹   NP_001128001
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,556 - 111,870,329 (+)NCBI
mRatBN7.27109,979,060 - 109,989,833 (+)NCBI
Rnor_6.07119,647,375 - 119,658,148 (+)NCBI
Rnor_5.07119,637,805 - 119,667,724 (+)NCBI
RGSC_v3.47116,379,781 - 116,390,554 (+)RGD
Celera7106,317,169 - 106,328,014 (+)RGD
Sequence:
RefSeq Acc Id: NM_001395732   ⟹   NP_001382661
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,556 - 111,870,329 (+)NCBI
mRatBN7.27109,979,060 - 109,989,833 (+)NCBI
RefSeq Acc Id: XM_006241976   ⟹   XP_006242038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,561 - 111,870,319 (+)NCBI
mRatBN7.27109,979,065 - 109,989,175 (+)NCBI
Rnor_6.07119,647,301 - 119,656,565 (+)NCBI
Rnor_5.07119,637,805 - 119,667,724 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006241977   ⟹   XP_006242039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,561 - 111,870,319 (+)NCBI
mRatBN7.27109,979,065 - 109,989,823 (+)NCBI
Rnor_6.07119,647,362 - 119,658,138 (+)NCBI
Rnor_5.07119,637,805 - 119,667,724 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006241978   ⟹   XP_006242040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,585 - 111,870,319 (+)NCBI
mRatBN7.27109,979,084 - 109,988,049 (+)NCBI
Rnor_6.07119,647,358 - 119,656,317 (+)NCBI
Rnor_5.07119,637,805 - 119,667,724 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006241983   ⟹   XP_006242045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,573 - 111,870,319 (+)NCBI
mRatBN7.27109,979,086 - 109,989,823 (+)NCBI
Rnor_6.07119,647,375 - 119,658,138 (+)NCBI
Rnor_5.07119,637,805 - 119,667,724 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039078947   ⟹   XP_038934875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,561 - 111,869,513 (+)NCBI
mRatBN7.27109,979,065 - 109,989,175 (+)NCBI
RefSeq Acc Id: XM_039078948   ⟹   XP_038934876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,561 - 111,869,513 (+)NCBI
mRatBN7.27109,979,065 - 109,989,175 (+)NCBI
RefSeq Acc Id: XM_039078949   ⟹   XP_038934877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,581 - 111,869,513 (+)NCBI
mRatBN7.27109,979,082 - 109,989,175 (+)NCBI
RefSeq Acc Id: XM_039078951   ⟹   XP_038934879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,561 - 111,870,319 (+)NCBI
mRatBN7.27109,979,065 - 109,989,823 (+)NCBI
RefSeq Acc Id: XM_039078952   ⟹   XP_038934880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,582 - 111,870,319 (+)NCBI
mRatBN7.27109,979,083 - 109,989,823 (+)NCBI
RefSeq Acc Id: XM_039078953   ⟹   XP_038934881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,584 - 111,869,558 (+)NCBI
mRatBN7.27109,979,084 - 109,989,823 (+)NCBI
RefSeq Acc Id: XM_039078954   ⟹   XP_038934882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,572 - 111,891,869 (+)NCBI
mRatBN7.27109,979,084 - 110,009,091 (+)NCBI
RefSeq Acc Id: XM_039078955   ⟹   XP_038934883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,586 - 111,875,434 (+)NCBI
mRatBN7.27109,979,086 - 109,995,962 (+)NCBI
RefSeq Acc Id: XM_063263391   ⟹   XP_063119461
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,584 - 111,868,801 (+)NCBI
RefSeq Acc Id: XM_063263392   ⟹   XP_063119462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,584 - 111,868,811 (+)NCBI
RefSeq Acc Id: XM_063263393   ⟹   XP_063119463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,859,586 - 111,868,811 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001128001 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382661 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242038 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242039 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242040 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242045 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934875 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934876 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934877 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934879 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934880 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934881 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934882 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934883 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119461 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119462 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119463 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM15868 (Get FASTA)   NCBI Sequence Viewer  
  EDM15869 (Get FASTA)   NCBI Sequence Viewer  
  EDM15870 (Get FASTA)   NCBI Sequence Viewer  
  EDM15871 (Get FASTA)   NCBI Sequence Viewer  
  EDM15872 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000044649
  ENSRNOP00000044649.3
  ENSRNOP00000081151
  ENSRNOP00000081151.1
  ENSRNOP00000083040
  ENSRNOP00000083040.1
  ENSRNOP00000086871
  ENSRNOP00000086871.1
  ENSRNOP00000093901
  ENSRNOP00000093901.1
Reference Protein Sequences
RefSeq Acc Id: NP_001128001   ⟸   NM_001134529
- Peptide Label: isoform 2
- UniProtKB: A6HSK3 (UniProtKB/TrEMBL),   A6HSK4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242045   ⟸   XM_006241983
- Peptide Label: isoform X13
- UniProtKB: A6HSK1 (UniProtKB/TrEMBL),   A6HSK4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242039   ⟸   XM_006241977
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZRW4 (UniProtKB/TrEMBL),   A6HSK0 (UniProtKB/TrEMBL),   A6HSK4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242038   ⟸   XM_006241976
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AKZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242040   ⟸   XM_006241978
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A664 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000044649   ⟸   ENSRNOT00000046563
RefSeq Acc Id: XP_038934879   ⟸   XM_039078951
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038934875   ⟸   XM_039078947
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038934876   ⟸   XM_039078948
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038934877   ⟸   XM_039078949
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038934880   ⟸   XM_039078952
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038934882   ⟸   XM_039078954
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZZ48 (UniProtKB/TrEMBL),   A6HSK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934881   ⟸   XM_039078953
- Peptide Label: isoform X10
- UniProtKB: A6HSK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934883   ⟸   XM_039078955
- Peptide Label: isoform X14
- UniProtKB: A6HSK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000093901   ⟸   ENSRNOT00000117512
RefSeq Acc Id: ENSRNOP00000086871   ⟸   ENSRNOT00000114366
RefSeq Acc Id: ENSRNOP00000081151   ⟸   ENSRNOT00000105459
RefSeq Acc Id: ENSRNOP00000083040   ⟸   ENSRNOT00000094378
RefSeq Acc Id: NP_001382661   ⟸   NM_001395732
- Peptide Label: isoform 1
- UniProtKB: D3ZYQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119462   ⟸   XM_063263392
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063119461   ⟸   XM_063263391
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063119463   ⟸   XM_063263393
- Peptide Label: isoform X12
Protein Domains
BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZYQ0-F1-model_v2 AlphaFold D3ZYQ0 1-246 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695461
Promoter ID:EPDNEW_R5986
Type:multiple initiation site
Name:Kctd17_1
Description:potassium channel tetramerization domain containing 17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07119,647,425 - 119,647,485EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311154 AgrOrtholog
BioCyc Gene G2FUF-32820 BioCyc
Ensembl Genes ENSRNOG00000000231 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046563 ENTREZGENE
  ENSRNOT00000046563.3 UniProtKB/TrEMBL
  ENSRNOT00000094378.1 UniProtKB/TrEMBL
  ENSRNOT00000105459 ENTREZGENE
  ENSRNOT00000105459.1 UniProtKB/TrEMBL
  ENSRNOT00000114366.1 UniProtKB/TrEMBL
  ENSRNOT00000117512.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.2000 UniProtKB/TrEMBL
  6.10.140.750 UniProtKB/TrEMBL
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv_tetra UniProtKB/TrEMBL
KEGG Report rno:300317 UniProtKB/TrEMBL
NCBI Gene 300317 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD17 UniProtKB/TrEMBL
  POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam K_tetra UniProtKB/TrEMBL
PhenoGen Kctd17 PhenoGen
RatGTEx ENSRNOG00000000231 RatGTEx
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
UniProt A0A8I5ZRW4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZZ48 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A664 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKZ1 ENTREZGENE, UniProtKB/TrEMBL
  A6HSK0 ENTREZGENE, UniProtKB/TrEMBL
  A6HSK1 ENTREZGENE, UniProtKB/TrEMBL
  A6HSK3 ENTREZGENE, UniProtKB/TrEMBL
  A6HSK4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZYQ0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-09 Kctd17  potassium channel tetramerization domain containing 17  Kctd17  potassium channel tetramerisation domain containing 17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Kctd17  potassium channel tetramerisation domain containing 17  RGD1311154  similar to hypothetical protein FLJ12242  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1311154  similar to hypothetical protein FLJ12242   RGD1311154_predicted  similar to hypothetical protein FLJ12242 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1311154_predicted  similar to hypothetical protein FLJ12242 (predicted)  LOC300317_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC300317_predicted  similar to hypothetical protein FLJ12242 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL