Ppfia3 (protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3) - Rat Genome Database

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Gene: Ppfia3 (protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3) Mus musculus
Analyze
Symbol: Ppfia3
Name: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
RGD ID: 1623894
MGI Page MGI
Description: Involved in synaptic vesicle docking. Located in acrosomal vesicle. Is active in glutamatergic synapse and presynaptic active zone cytoplasmic component. Is expressed in nervous system; nose; and retina layer. Orthologous to human PPFIA3 (PTPRF interacting protein alpha 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2410127E16Rik; liprin-alpha-3; Liprin-alpha3; protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-3; PTPRF-interacting protein alpha-3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,988,550 - 45,016,443 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,988,546 - 45,016,443 (-)EnsemblGRCm39 Ensembl
GRCm38745,339,126 - 45,367,019 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,339,122 - 45,367,019 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,594,496 - 52,622,389 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,207,315 - 45,234,968 (-)NCBIMGSCv36mm8
Celera740,795,384 - 40,839,554 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16186258  
PMID:16452087   PMID:16512683   PMID:16959763   PMID:19013515   PMID:19026994   PMID:21267068   PMID:21618221   PMID:21873635   PMID:22442722   PMID:22794259   PMID:23124857   PMID:25911102  
PMID:27889896   PMID:28671696   PMID:29439199   PMID:32005855   PMID:32325033   PMID:32581705   PMID:33378226   PMID:33601422   PMID:34031393   PMID:34321999   PMID:34767769   PMID:36417873  
PMID:38355793  


Genomics

Comparative Map Data
Ppfia3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,988,550 - 45,016,443 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,988,546 - 45,016,443 (-)EnsemblGRCm39 Ensembl
GRCm38745,339,126 - 45,367,019 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,339,122 - 45,367,019 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,594,496 - 52,622,389 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,207,315 - 45,234,968 (-)NCBIMGSCv36mm8
Celera740,795,384 - 40,839,554 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.26NCBI
PPFIA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,119,544 - 49,151,026 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,119,544 - 49,151,026 (+)EnsemblGRCh38hg38GRCh38
GRCh371949,622,801 - 49,654,283 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,314,475 - 54,346,095 (+)NCBINCBI36Build 36hg18NCBI36
Build 341954,314,474 - 54,346,090NCBI
Celera1946,489,883 - 46,521,507 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1945,998,810 - 46,030,520 (+)NCBIHuRef
CHM1_11949,624,758 - 49,656,397 (+)NCBICHM1_1
T2T-CHM13v2.01952,114,278 - 52,145,758 (+)NCBIT2T-CHM13v2.0
Ppfia3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,953,598 - 104,982,373 (-)NCBIGRCr8
mRatBN7.2195,817,110 - 95,845,950 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,817,110 - 95,845,798 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1101,202,552 - 101,231,232 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,675,227 - 109,703,909 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,965,627 - 102,994,309 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,328,547 - 101,357,391 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,327,998 - 101,351,879 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,392,070 - 102,421,097 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,808,898 - 95,837,739 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,890,235 - 95,915,719 (-)NCBI
Celera190,073,489 - 90,102,099 (-)NCBICelera
Cytogenetic Map1q22NCBI
Ppfia3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,587,638 - 1,610,064 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,587,633 - 1,610,065 (-)NCBIChiLan1.0ChiLan1.0
PPFIA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22055,234,484 - 55,265,941 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,153,939 - 57,185,473 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,130,396 - 46,162,065 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,056,824 - 55,089,124 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,056,824 - 55,089,124 (+)Ensemblpanpan1.1panPan2
PPFIA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,308,903 - 107,327,300 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,319,427 - 107,331,463 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,896,610 - 106,908,657 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,833,772 - 107,856,380 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,833,777 - 107,856,389 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,501,869 - 107,524,288 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01107,148,102 - 107,170,513 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,983,689 - 108,006,115 (-)NCBIUU_Cfam_GSD_1.0
Ppfia3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,445,428 - 21,469,838 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,063,564 - 3,089,481 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,063,607 - 3,088,031 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPFIA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,313,981 - 54,337,338 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,313,981 - 54,337,345 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,991,058 - 50,014,411 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPFIA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,342,791 - 42,372,598 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl642,350,203 - 42,371,720 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607322,235,101 - 22,265,781 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppfia3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,941,766 - 4,964,602 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,941,760 - 4,964,615 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ppfia3
694 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2991
Count of miRNA genes:648
Interacting mature miRNAs:815
Transcripts:ENSMUST00000003961, ENSMUST00000107779, ENSMUST00000127948, ENSMUST00000130143, ENSMUST00000131154, ENSMUST00000137578, ENSMUST00000151970
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse

Markers in Region
UniSTS:490506  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38745,367,233 - 45,367,765UniSTSGRCm38
MGSCv37752,622,603 - 52,623,135UniSTSGRCm37
Celera740,823,260 - 40,823,792UniSTS
Cytogenetic Map7B4UniSTS
RH125108  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38745,381,417 - 45,381,531UniSTSGRCm38
MGSCv37752,636,787 - 52,636,901UniSTSGRCm37
Celera740,837,443 - 40,837,557UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.0UniSTS
BE114951  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38745,376,543 - 45,376,698UniSTSGRCm38
MGSCv37752,631,913 - 52,632,068UniSTSGRCm37
Celera740,832,569 - 40,832,724UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.0UniSTS
Snrp70  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38745,382,083 - 45,382,662UniSTSGRCm38
MGSCv37752,637,453 - 52,638,032UniSTSGRCm37
Celera740,838,109 - 40,838,688UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_029741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006541273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB516303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC150897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC151602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW060329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU568871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000003961   ⟹   ENSMUSP00000003961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,988,551 - 45,016,225 (-)Ensembl
GRCm38.p6 Ensembl745,339,127 - 45,366,801 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209424
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,013,480 - 45,016,388 (-)Ensembl
GRCm38.p6 Ensembl745,364,056 - 45,366,964 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210248   ⟹   ENSMUSP00000147584
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,988,699 - 45,009,537 (-)Ensembl
GRCm38.p6 Ensembl745,339,275 - 45,360,113 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210479
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,988,546 - 45,011,246 (-)Ensembl
GRCm38.p6 Ensembl745,339,122 - 45,361,822 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210586
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,988,697 - 45,016,443 (-)Ensembl
GRCm38.p6 Ensembl745,339,273 - 45,367,019 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,988,705 - 44,990,186 (-)Ensembl
GRCm38.p6 Ensembl745,339,281 - 45,340,762 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211067   ⟹   ENSMUSP00000148200
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,988,550 - 45,016,138 (-)Ensembl
GRCm38.p6 Ensembl745,339,126 - 45,366,714 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211098
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,988,551 - 44,990,584 (-)Ensembl
GRCm38.p6 Ensembl745,339,127 - 45,341,160 (-)Ensembl
RefSeq Acc Id: NM_029741   ⟹   NP_084017
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,988,550 - 45,016,443 (-)NCBI
GRCm38745,339,126 - 45,367,019 (-)NCBI
MGSCv37752,594,496 - 52,622,389 (-)RGD
Celera740,795,384 - 40,822,968 (-)NCBI
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006541273   ⟹   XP_006541336
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,988,697 - 45,016,438 (-)NCBI
GRCm38745,339,273 - 45,367,019 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250912   ⟹   XP_011249214
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,988,697 - 45,016,411 (-)NCBI
GRCm38745,339,273 - 45,366,988 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250914   ⟹   XP_011249216
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,988,697 - 45,016,438 (-)NCBI
GRCm38745,339,273 - 45,367,019 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250915   ⟹   XP_011249217
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,988,697 - 45,002,904 (-)NCBI
GRCm38745,339,273 - 45,353,483 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153551   ⟹   XP_036009444
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,988,697 - 45,016,438 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153552   ⟹   XP_036009445
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,988,697 - 45,016,438 (-)NCBI
Sequence:
RefSeq Acc Id: NP_084017   ⟸   NM_029741
- UniProtKB: B8QI35 (UniProtKB/Swiss-Prot),   P60469 (UniProtKB/Swiss-Prot),   C7G3P1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006541336   ⟸   XM_006541273
- Peptide Label: isoform X1
- UniProtKB: B8QI35 (UniProtKB/Swiss-Prot),   P60469 (UniProtKB/Swiss-Prot),   C7G3P1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011249216   ⟸   XM_011250914
- Peptide Label: isoform X2
- UniProtKB: C7G3P1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011249214   ⟸   XM_011250912
- Peptide Label: isoform X1
- UniProtKB: B8QI35 (UniProtKB/Swiss-Prot),   P60469 (UniProtKB/Swiss-Prot),   C7G3P1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011249217   ⟸   XM_011250915
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSMUSP00000148200   ⟸   ENSMUST00000211067
RefSeq Acc Id: ENSMUSP00000147584   ⟸   ENSMUST00000210248
RefSeq Acc Id: ENSMUSP00000003961   ⟸   ENSMUST00000003961
RefSeq Acc Id: XP_036009445   ⟸   XM_036153552
- Peptide Label: isoform X2
- UniProtKB: C7G3P1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036009444   ⟸   XM_036153551
- Peptide Label: isoform X1
- UniProtKB: P60469 (UniProtKB/Swiss-Prot),   B8QI35 (UniProtKB/Swiss-Prot),   C7G3P1 (UniProtKB/TrEMBL)
Protein Domains
SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P60469-F1-model_v2 AlphaFold P60469 1-1194 view protein structure

Promoters
RGD ID:8664007
Promoter ID:EPDNEW_M10034
Type:initiation region
Name:Ppfia3_1
Description:Mus musculus protein tyrosine phosphatase, receptor type, f polypeptide, interacting protein , alpha 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10036  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38745,340,728 - 45,340,788EPDNEW
RGD ID:8664011
Promoter ID:EPDNEW_M10036
Type:initiation region
Name:Ppfia3_2
Description:Mus musculus protein tyrosine phosphatase, receptor type, f polypeptide, interacting protein , alpha 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10034  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38745,367,049 - 45,367,109EPDNEW
RGD ID:6841807
Promoter ID:MM_KWN:50386
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   Lung
Transcripts:ENSMUST00000094439,   OTTMUST00000058212,   OTTMUST00000058213,   OTTMUST00000058214
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,596,181 - 52,597,477 (-)MPROMDB
RGD ID:6841804
Promoter ID:MM_KWN:50387
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000058211
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,615,626 - 52,616,126 (-)MPROMDB
RGD ID:6841586
Promoter ID:MM_KWN:50389
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B6,   Spleen
Transcripts:ENSMUST00000003961,   ENSMUST00000107779,   NM_029741,   NR_027802,   OTTMUST00000058157,   OTTMUST00000058158,   UC009GUT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,622,636 - 52,623,136 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924037 AgrOrtholog
Ensembl Genes ENSMUSG00000003863 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000003961 ENTREZGENE
  ENSMUST00000003961.16 UniProtKB/Swiss-Prot
  ENSMUST00000210248 ENTREZGENE
  ENSMUST00000210248.2 UniProtKB/TrEMBL
  ENSMUST00000210479 ENTREZGENE
  ENSMUST00000210586 ENTREZGENE
  ENSMUST00000211067 ENTREZGENE
  ENSMUST00000211067.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.10.287.1490 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Liprin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Liprin-alpha_SAM_rpt_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Liprin-alpha_SAM_rpt_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Liprin-alpha_SAM_rpt_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:76787 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1924037 ENTREZGENE
NCBI Gene 76787 ENTREZGENE
PANTHER PTHR12587 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12587:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SAM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ppfia3 PhenoGen
PROSITE SAM_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GRM4_MOUSE UniProtKB/TrEMBL
  B8QI35 ENTREZGENE
  C7G3P1 ENTREZGENE, UniProtKB/TrEMBL
  LIPA3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9CWF5_MOUSE UniProtKB/TrEMBL
UniProt Secondary B8QI35 UniProtKB/Swiss-Prot