Tmem229a (transmembrane protein 229A) - Rat Genome Database

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Gene: Tmem229a (transmembrane protein 229A) Mus musculus
Analyze
Symbol: Tmem229a
Name: transmembrane protein 229A
RGD ID: 1623710
MGI Page MGI
Description: Predicted to be located in membrane. Orthologous to human TMEM229A (transmembrane protein 229A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6332401O19Rik
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39624,951,140 - 24,956,124 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl624,951,140 - 24,956,296 (-)EnsemblGRCm39 Ensembl
GRCm38624,951,141 - 24,956,125 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl624,951,141 - 24,956,297 (-)EnsemblGRCm38mm10GRCm38
MGSCv37624,901,141 - 24,906,125 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36624,903,789 - 24,906,101 (-)NCBIMGSCv36mm8
Celera624,961,659 - 24,966,763 (-)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map611.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
Tmem229a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39624,951,140 - 24,956,124 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl624,951,140 - 24,956,296 (-)EnsemblGRCm39 Ensembl
GRCm38624,951,141 - 24,956,125 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl624,951,141 - 24,956,297 (-)EnsemblGRCm38mm10GRCm38
MGSCv37624,901,141 - 24,906,125 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36624,903,789 - 24,906,101 (-)NCBIMGSCv36mm8
Celera624,961,659 - 24,966,763 (-)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map611.29NCBI
TMEM229A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387124,030,921 - 124,033,067 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7124,030,921 - 124,033,067 (-)EnsemblGRCh38hg38GRCh38
GRCh377123,670,975 - 123,673,121 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367123,459,151 - 123,460,349 (-)NCBINCBI36Build 36hg18NCBI36
Celera7118,474,746 - 118,477,299 (-)NCBICelera
Cytogenetic Map7q31.32NCBI
HuRef7118,035,496 - 118,038,042 (-)NCBIHuRef
CHM1_17123,604,295 - 123,606,848 (-)NCBICHM1_1
T2T-CHM13v2.07125,347,640 - 125,349,786 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27123,059,589 - 123,062,142 (-)NCBI
Tmem229a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8454,405,822 - 54,410,802 (-)NCBIGRCr8
mRatBN7.2453,440,287 - 53,445,286 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl453,443,831 - 53,444,940 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx458,427,104 - 58,432,084 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0454,347,060 - 54,352,041 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0452,765,663 - 52,770,644 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0452,345,605 - 52,350,624 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl452,345,605 - 52,350,624 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0452,115,167 - 52,120,186 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4451,417,197 - 51,422,216 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera448,602,511 - 48,607,530 (-)NCBICelera
Cytogenetic Map4q22NCBI
Tmem229a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554795,488,960 - 5,490,309 (-)NCBIChiLan1.0ChiLan1.0
TMEM229A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26160,881,093 - 160,885,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1712,891,343 - 12,895,953 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07116,021,378 - 116,023,524 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17128,703,586 - 128,705,727 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7128,704,539 - 128,705,678 (-)Ensemblpanpan1.1panPan2
TMEM229A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1872,110 - 84,725 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1411,646,915 - 11,648,024 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1411,646,915 - 11,648,024 (+)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1411,337,937 - 11,340,582 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01411,431,371 - 11,436,599 (+)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.01411,358,653 - 11,363,856 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01411,599,493 - 11,601,046 (+)NCBIUU_Cfam_GSD_1.0
Tmem229a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511850,659,987 - 50,665,291 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366051,538,938 - 1,540,044 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366051,538,483 - 1,542,397 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM229A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1823,531,536 - 23,532,648 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11823,531,498 - 23,533,619 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21825,128,586 - 25,130,784 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM229A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12192,822,707 - 92,825,451 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2192,823,855 - 92,824,991 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604210,640,578 - 10,642,747 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem229a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478311,996,531 - 11,997,655 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478311,996,169 - 12,000,881 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tmem229a
141 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:959
Count of miRNA genes:556
Interacting mature miRNAs:667
Transcripts:ENSMUST00000127247
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144495Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920638249325Mouse
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144495Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144495Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633435476334Mouse
12904942Tammq3_mtibialis anterior muscle mass QTL 3 (mouse)6125514064Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
12904934Edlmmq4_mextensor digitorum longus muscle mass QTL 4 (mouse)6125514064Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
12904955Gmmq3_mgastrocnemius muscle mass QTL 3 (mouse)6125514064Mouse
11353836Bmiq1_mbody mass index QTL 1 (mouse)6450382329751333Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse

Markers in Region
RH66118  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38624,954,766 - 24,954,918UniSTSGRCm38
MGSCv37624,904,766 - 24,904,918UniSTSGRCm37
Celera624,965,284 - 24,965,436UniSTS
Cytogenetic Map6A3.1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000127247   ⟹   ENSMUSP00000116234
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl624,951,140 - 24,956,296 (-)Ensembl
GRCm38.p6 Ensembl624,951,141 - 24,956,297 (-)Ensembl
RefSeq Acc Id: NM_177013   ⟹   NP_795987
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39624,951,140 - 24,956,124 (-)NCBI
GRCm38624,951,141 - 24,956,125 (-)ENTREZGENE
MGSCv37624,901,141 - 24,906,125 (-)RGD
Celera624,961,659 - 24,966,763 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_795987 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI47242 (Get FASTA)   NCBI Sequence Viewer  
  AAI47243 (Get FASTA)   NCBI Sequence Viewer  
  B9EJI9 (Get FASTA)   NCBI Sequence Viewer  
  BAC39885 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000116234
  ENSMUSP00000116234.3
Reference Protein Sequences
RefSeq Acc Id: NP_795987   ⟸   NM_177013
- UniProtKB: B9EJI9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000116234   ⟸   ENSMUST00000127247

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B9EJI9-F1-model_v2 AlphaFold B9EJI9 1-371 view protein structure

Promoters
RGD ID:6840086
Promoter ID:MM_KWN:45315
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney
Transcripts:ENSMUST00000050249,   NM_177013
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36624,905,939 - 24,906,439 (-)MPROMDB
RGD ID:6889128
Promoter ID:EPDNEW_M8015
Type:initiation region
Name:Tmem229a_1
Description:Mus musculus transmembrane protein 229A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38624,956,091 - 24,956,151EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442812 AgrOrtholog
Ensembl Genes ENSMUSG00000048022 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000127247 ENTREZGENE
  ENSMUST00000127247.4 UniProtKB/Swiss-Prot
KEGG Report mmu:319832 UniProtKB/Swiss-Prot
MGD MGI:2442812 ENTREZGENE
NCBI Gene 319832 ENTREZGENE
PANTHER TRANSMEMBRANE PROTEIN 229 FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 229A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tmem229a PhenoGen
UniProt B9EJI9 ENTREZGENE
  Q8BN70_MOUSE UniProtKB/TrEMBL
  T229A_MOUSE UniProtKB/Swiss-Prot