TMEM229A (transmembrane protein 229A) - Rat Genome Database

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Gene: TMEM229A (transmembrane protein 229A) Homo sapiens
Analyze
Symbol: TMEM229A
Name: transmembrane protein 229A
RGD ID: 3102903
HGNC Page HGNC:37279
Description: Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC189723
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387124,030,921 - 124,033,067 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7124,030,921 - 124,033,067 (-)EnsemblGRCh38hg38GRCh38
GRCh377123,670,975 - 123,673,121 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367123,459,151 - 123,460,349 (-)NCBINCBI36Build 36hg18NCBI36
Celera7118,474,746 - 118,477,299 (-)NCBICelera
Cytogenetic Map7q31.32NCBI
HuRef7118,035,496 - 118,038,042 (-)NCBIHuRef
CHM1_17123,604,295 - 123,606,848 (-)NCBICHM1_1
T2T-CHM13v2.07125,347,640 - 125,349,786 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27123,059,589 - 123,062,142 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:12690205   PMID:34184076  


Genomics

Comparative Map Data
TMEM229A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387124,030,921 - 124,033,067 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7124,030,921 - 124,033,067 (-)EnsemblGRCh38hg38GRCh38
GRCh377123,670,975 - 123,673,121 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367123,459,151 - 123,460,349 (-)NCBINCBI36Build 36hg18NCBI36
Celera7118,474,746 - 118,477,299 (-)NCBICelera
Cytogenetic Map7q31.32NCBI
HuRef7118,035,496 - 118,038,042 (-)NCBIHuRef
CHM1_17123,604,295 - 123,606,848 (-)NCBICHM1_1
T2T-CHM13v2.07125,347,640 - 125,349,786 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27123,059,589 - 123,062,142 (-)NCBI
Tmem229a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39624,951,140 - 24,956,124 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl624,951,140 - 24,956,296 (-)EnsemblGRCm39 Ensembl
GRCm38624,951,141 - 24,956,125 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl624,951,141 - 24,956,297 (-)EnsemblGRCm38mm10GRCm38
MGSCv37624,901,141 - 24,906,125 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36624,903,789 - 24,906,101 (-)NCBIMGSCv36mm8
Celera624,961,659 - 24,966,763 (-)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map611.29NCBI
Tmem229a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8454,405,822 - 54,410,802 (-)NCBIGRCr8
mRatBN7.2453,440,287 - 53,445,286 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl453,443,831 - 53,444,940 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx458,427,104 - 58,432,084 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0454,347,060 - 54,352,041 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0452,765,663 - 52,770,644 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0452,345,605 - 52,350,624 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl452,345,605 - 52,350,624 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0452,115,167 - 52,120,186 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4451,417,197 - 51,422,216 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera448,602,511 - 48,607,530 (-)NCBICelera
Cytogenetic Map4q22NCBI
Tmem229a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554795,488,960 - 5,490,309 (-)NCBIChiLan1.0ChiLan1.0
TMEM229A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26160,881,093 - 160,885,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1712,891,343 - 12,895,953 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07116,021,378 - 116,023,524 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17128,703,586 - 128,705,727 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7128,704,539 - 128,705,678 (-)Ensemblpanpan1.1panPan2
TMEM229A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1872,110 - 84,725 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1411,646,915 - 11,648,024 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1411,646,915 - 11,648,024 (+)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1411,337,937 - 11,340,582 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01411,431,371 - 11,436,599 (+)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.01411,358,653 - 11,363,856 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01411,599,493 - 11,601,046 (+)NCBIUU_Cfam_GSD_1.0
Tmem229a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511850,659,987 - 50,665,291 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366051,538,938 - 1,540,044 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366051,538,483 - 1,542,397 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM229A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1823,531,536 - 23,532,648 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11823,531,498 - 23,533,619 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21825,128,586 - 25,130,784 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM229A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12192,822,707 - 92,825,451 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2192,823,855 - 92,824,991 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604210,640,578 - 10,642,747 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem229a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478311,996,531 - 11,997,655 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478311,996,169 - 12,000,881 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM229A
11 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q31.1-31.33(chr7:113799835-124899218)x1 copy number loss See cases [RCV000054160] Chr7:113799835..124899218 [GRCh38]
Chr7:113439890..124539272 [GRCh37]
Chr7:113227126..124326508 [NCBI36]
Chr7:7q31.1-31.33		 pathogenic
GRCh38/hg38 7q31.32-31.33(chr7:123319393-124170657)x3 copy number gain See cases [RCV000134327] Chr7:123319393..124170657 [GRCh38]
Chr7:122959447..123810711 [GRCh37]
Chr7:122746683..123597947 [NCBI36]
Chr7:7q31.32-31.33		 uncertain significance
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q31.1-31.33(chr7:114142477-125840381)x1 copy number loss See cases [RCV000135311] Chr7:114142477..125840381 [GRCh38]
Chr7:113782532..125480435 [GRCh37]
Chr7:113569768..125267671 [NCBI36]
Chr7:7q31.1-31.33		 pathogenic
GRCh38/hg38 7q21.3-36.3(chr7:97419852-158923762)x3 copy number gain See cases [RCV000136717] Chr7:97419852..158923762 [GRCh38]
Chr7:97049164..158716453 [GRCh37]
Chr7:96887100..158409214 [NCBI36]
Chr7:7q21.3-36.3		 pathogenic
GRCh38/hg38 7q31.32-32.1(chr7:123829366-127947731)x1 copy number loss See cases [RCV000137416] Chr7:123829366..127947731 [GRCh38]
Chr7:123469420..127587784 [GRCh37]
Chr7:123256656..127375020 [NCBI36]
Chr7:7q31.32-32.1		 likely pathogenic
GRCh38/hg38 7q31.2-33(chr7:117326805-134790689)x1 copy number loss See cases [RCV000138226] Chr7:117326805..134790689 [GRCh38]
Chr7:116966859..134475440 [GRCh37]
Chr7:116754095..134125980 [NCBI36]
Chr7:7q31.2-33		 pathogenic
GRCh38/hg38 7q31.32-36.3(chr7:121863759-159335865)x3 copy number gain See cases [RCV000138847] Chr7:121863759..159335865 [GRCh38]
Chr7:121503813..159128555 [GRCh37]
Chr7:121291049..158821316 [NCBI36]
Chr7:7q31.32-36.3		 pathogenic
GRCh38/hg38 7q31.2-36.3(chr7:115459015-159325817)x3 copy number gain See cases [RCV000141413] Chr7:115459015..159325817 [GRCh38]
Chr7:115099069..159118507 [GRCh37]
Chr7:114886305..158811268 [NCBI36]
Chr7:7q31.2-36.3		 pathogenic
GRCh38/hg38 7q31.32-32.1(chr7:122018122-128907727)x1 copy number loss See cases [RCV000142521] Chr7:122018122..128907727 [GRCh38]
Chr7:121658176..128547780 [GRCh37]
Chr7:121445412..128335016 [NCBI36]
Chr7:7q31.32-32.1		 pathogenic
GRCh38/hg38 7q31.32-31.33(chr7:123303689-124164709)x3 copy number gain See cases [RCV000143276] Chr7:123303689..124164709 [GRCh38]
Chr7:122943743..123804763 [GRCh37]
Chr7:122730979..123591999 [NCBI36]
Chr7:7q31.32-31.33		 uncertain significance
GRCh38/hg38 7q31.32-31.33(chr7:123303689-124171626)x3 copy number gain See cases [RCV000143482] Chr7:123303689..124171626 [GRCh38]
Chr7:122943743..123811680 [GRCh37]
Chr7:122730979..123598916 [NCBI36]
Chr7:7q31.32-31.33		 uncertain significance
GRCh37/hg19 7q31.1-32.1(chr7:111613396-127897316)x1 copy number loss See cases [RCV000240177] Chr7:111613396..127897316 [GRCh37]
Chr7:7q31.1-32.1		 pathogenic
TMEM106B-BRAF fusion deletion Pleomorphic xanthoastrocytoma [RCV000454357] Chr7:12258147..140494267 [GRCh37]
Chr7:7p21.3-q34		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43360-159119707)x1 copy number loss See cases [RCV000446044] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q22.1-36.3(chr7:98969247-159119707)x3 copy number gain See cases [RCV000447709] Chr7:98969247..159119707 [GRCh37]
Chr7:7q22.1-36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707) copy number gain See cases [RCV000510686] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)x3 copy number gain See cases [RCV000511549] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q31.32-31.33(chr7:122943743-123804763)x3 copy number gain not provided [RCV000682868] Chr7:122943743..123804763 [GRCh37]
Chr7:7q31.32-31.33		 likely benign
GRCh37/hg19 7q22.1-36.3(chr7:98693388-159119707)x3 copy number gain not provided [RCV000682911] Chr7:98693388..159119707 [GRCh37]
Chr7:7q22.1-36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10704-159122532)x3 copy number gain not provided [RCV000746278] Chr7:10704..159122532 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:44935-159126310)x3 copy number gain not provided [RCV000746280] Chr7:44935..159126310 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10365-159119707)x3 copy number gain not provided [RCV000848126] Chr7:10365..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q31.32-32.2(chr7:121480906-129389003)x1 copy number loss not provided [RCV000847911] Chr7:121480906..129389003 [GRCh37]
Chr7:7q31.32-32.2		 pathogenic
GRCh37/hg19 7q31.1-36.3(chr7:109251060-159119707)x3 copy number gain not provided [RCV001005994] Chr7:109251060..159119707 [GRCh37]
Chr7:7q31.1-36.3		 pathogenic
Single allele deletion Delayed speech and language development [RCV002251690] Chr7:114888786..124720929 [GRCh37]
Chr7:7q31.2-31.33		 likely pathogenic
GRCh37/hg19 7q31.2-31.33(chr7:116297277-126370694) copy number loss Global developmental delay [RCV001352642] Chr7:116297277..126370694 [GRCh37]
Chr7:7q31.2-31.33		 pathogenic
GRCh37/hg19 7q22.3-32.1(chr7:106984287-128949489) copy number gain not specified [RCV002053715] Chr7:106984287..128949489 [GRCh37]
Chr7:7q22.3-32.1		 pathogenic
Single allele complex Ring chromosome 7 [RCV002280646] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:56604613-96692931)x1 copy number loss See cases [RCV002287832] Chr7:56604613..96692931 [GRCh37]
Chr7:7p22.3-q36.3		 uncertain significance
NM_001136002.2(TMEM229A):c.576G>C (p.Gln192His) single nucleotide variant not specified [RCV004095048] Chr7:124032428 [GRCh38]
Chr7:123672482 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.392G>C (p.Gly131Ala) single nucleotide variant not specified [RCV004091953] Chr7:124032612 [GRCh38]
Chr7:123672666 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.22A>C (p.Ser8Arg) single nucleotide variant not specified [RCV004109308] Chr7:124032982 [GRCh38]
Chr7:123673036 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.736T>C (p.Phe246Leu) single nucleotide variant not specified [RCV004174680] Chr7:124032268 [GRCh38]
Chr7:123672322 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.144C>G (p.Ser48Arg) single nucleotide variant not specified [RCV004079998] Chr7:124032860 [GRCh38]
Chr7:123672914 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.629G>A (p.Gly210Asp) single nucleotide variant not specified [RCV004178849] Chr7:124032375 [GRCh38]
Chr7:123672429 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.578A>C (p.Gln193Pro) single nucleotide variant not specified [RCV004135124] Chr7:124032426 [GRCh38]
Chr7:123672480 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.100G>A (p.Gly34Ser) single nucleotide variant not specified [RCV004274126] Chr7:124032904 [GRCh38]
Chr7:123672958 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.847A>G (p.Met283Val) single nucleotide variant not specified [RCV004258719] Chr7:124032157 [GRCh38]
Chr7:123672211 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.547G>A (p.Gly183Arg) single nucleotide variant not specified [RCV004272309] Chr7:124032457 [GRCh38]
Chr7:123672511 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.1132C>G (p.Pro378Ala) single nucleotide variant not specified [RCV004361521] Chr7:124031872 [GRCh38]
Chr7:123671926 [GRCh37]
Chr7:7q31.32		 uncertain significance
GRCh37/hg19 7q31.31-33(chr7:120582003-137699953)x1 copy number loss not specified [RCV003986721] Chr7:120582003..137699953 [GRCh37]
Chr7:7q31.31-33		 pathogenic
NM_001136002.2(TMEM229A):c.205G>A (p.Val69Met) single nucleotide variant not specified [RCV004467549] Chr7:124032799 [GRCh38]
Chr7:123672853 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.913G>A (p.Gly305Ser) single nucleotide variant not specified [RCV004467554] Chr7:124032091 [GRCh38]
Chr7:123672145 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.892C>T (p.Leu298Phe) single nucleotide variant not specified [RCV004467553] Chr7:124032112 [GRCh38]
Chr7:123672166 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.662G>T (p.Arg221Leu) single nucleotide variant not specified [RCV004467552] Chr7:124032342 [GRCh38]
Chr7:123672396 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.352T>G (p.Phe118Val) single nucleotide variant not specified [RCV004467550] Chr7:124032652 [GRCh38]
Chr7:123672706 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.1096C>G (p.Leu366Val) single nucleotide variant not specified [RCV004467547] Chr7:124031908 [GRCh38]
Chr7:123671962 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.361A>G (p.Asn121Asp) single nucleotide variant not specified [RCV004467551] Chr7:124032643 [GRCh38]
Chr7:123672697 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.964C>G (p.Leu322Val) single nucleotide variant not specified [RCV004467555] Chr7:124032040 [GRCh38]
Chr7:123672094 [GRCh37]
Chr7:7q31.32		 uncertain significance
NM_001136002.2(TMEM229A):c.1108G>A (p.Val370Met) single nucleotide variant not specified [RCV004467548] Chr7:124031896 [GRCh38]
Chr7:123671950 [GRCh37]
Chr7:7q31.32		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:335
Count of miRNA genes:274
Interacting mature miRNAs:292
Transcripts:ENST00000455783
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH66118  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377123,672,043 - 123,672,195UniSTSGRCh37
Build 367123,459,279 - 123,459,431RGDNCBI36
Celera7118,475,819 - 118,475,971RGD
Cytogenetic Map7q31.32UniSTS
HuRef7118,036,568 - 118,036,720UniSTS
CRA_TCAGchr7v27123,060,662 - 123,060,814UniSTS
GeneMap99-GB4 RH Map7566.08UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 6 2 3 3 16 188 179 2
Low 529 84 471 71 161 5 440 37 3085 19 334 74 68 2 259 1
Below cutoff 1530 1164 641 181 346 100 1718 1241 357 78 549 846 83 347 1219 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000455783   ⟹   ENSP00000395244
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7124,030,921 - 124,033,067 (-)Ensembl
RefSeq Acc Id: NM_001136002   ⟹   NP_001129474
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387124,030,921 - 124,033,067 (-)NCBI
GRCh377123,670,970 - 123,673,523 (-)RGD
Celera7118,474,746 - 118,477,299 (-)RGD
HuRef7118,035,496 - 118,038,042 (-)ENTREZGENE
CHM1_17123,604,295 - 123,606,848 (-)NCBI
T2T-CHM13v2.07125,347,640 - 125,349,786 (-)NCBI
CRA_TCAGchr7v27123,059,589 - 123,062,142 (-)ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001129474 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI57829 (Get FASTA)   NCBI Sequence Viewer  
  AAI71809 (Get FASTA)   NCBI Sequence Viewer  
  B2RXF0 (Get FASTA)   NCBI Sequence Viewer  
  EAL24328 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000395244
  ENSP00000395244.1
Reference Protein Sequences
RefSeq Acc Id: NP_001129474   ⟸   NM_001136002
- UniProtKB: A4D0X6 (UniProtKB/Swiss-Prot),   B2RXF0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000395244   ⟸   ENST00000455783

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RXF0-F1-model_v2 AlphaFold B2RXF0 1-380 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:37279 AgrOrtholog
COSMIC TMEM229A COSMIC
Ensembl Genes ENSG00000234224 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000455783 ENTREZGENE
  ENST00000455783.3 UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.20.10 UniProtKB/Swiss-Prot
GTEx ENSG00000234224 GTEx
HGNC ID HGNC:37279 ENTREZGENE
Human Proteome Map TMEM229A Human Proteome Map
InterPro Tat_dom_sf UniProtKB/Swiss-Prot
KEGG Report hsa:730130 UniProtKB/Swiss-Prot
NCBI Gene 730130 ENTREZGENE
PANTHER TRANSMEMBRANE PROTEIN 229 FAMILY MEMBER UniProtKB/Swiss-Prot
  TRANSMEMBRANE PROTEIN 229A UniProtKB/Swiss-Prot
PharmGKB PA165618420 PharmGKB
UniProt A4D0X6 ENTREZGENE
  B2RXF0 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A4D0X6 UniProtKB/Swiss-Prot