Bysl (bystin-like) - Rat Genome Database

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Gene: Bysl (bystin-like) Mus musculus
Analyze
Symbol: Bysl
Name: bystin-like
RGD ID: 1623252
MGI Page MGI
Description: Predicted to enable snoRNA binding activity. Acts upstream of or within maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); stem cell proliferation; and trophectodermal cell differentiation. Located in apical part of cell; cytoplasm; and nucleolus. Is expressed in several structures, including bone marrow; early conceptus; intestine; liver; and reproductive system. Orthologous to human BYSL (bystin like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Bys; bystin; En; Enp1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm17796  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391747,910,256 - 47,922,417 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1747,910,256 - 47,922,417 (-)EnsemblGRCm39 Ensembl
GRCm381747,599,331 - 47,611,492 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1747,599,331 - 47,611,492 (-)EnsemblGRCm38mm10GRCm38
MGSCv371747,736,280 - 47,748,441 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361747,063,271 - 47,074,675 (-)NCBIMGSCv36mm8
Celera1751,036,357 - 51,048,455 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1723.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. An overview of pre-ribosomal RNA processing in eukaryotes. Henras AK, etal., Wiley Interdiscip Rev RNA. 2015 Mar-Apr;6(2):225-42. doi: 10.1002/wrna.1269. Epub 2014 Oct 27.
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Bystin as a novel marker for reactive astrocytes in the adult rat brain following injury. Sheng J, etal., Eur J Neurosci. 2004 Aug;20(4):873-84.
5. Both endonucleolytic and exonucleolytic cleavage mediate ITS1 removal during human ribosomal RNA processing. Sloan KE, etal., J Cell Biol. 2013 Mar 4;200(5):577-88. doi: 10.1083/jcb.201207131. Epub 2013 Feb 25.
6. CK1delta and CK1epsilon are components of human 40S subunit precursors required for cytoplasmic 40S maturation. Zemp I, etal., J Cell Sci. 2014 Mar 15;127(Pt 6):1242-53. doi: 10.1242/jcs.138719. Epub 2014 Jan 14.
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11252172   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12527778   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17055491   PMID:17242206   PMID:18799693   PMID:21267068   PMID:21589869   PMID:21677750   PMID:21873635   PMID:26336360   PMID:26919559   PMID:30196744  
PMID:36704911  


Genomics

Comparative Map Data
Bysl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391747,910,256 - 47,922,417 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1747,910,256 - 47,922,417 (-)EnsemblGRCm39 Ensembl
GRCm381747,599,331 - 47,611,492 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1747,599,331 - 47,611,492 (-)EnsemblGRCm38mm10GRCm38
MGSCv371747,736,280 - 47,748,441 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361747,063,271 - 47,074,675 (-)NCBIMGSCv36mm8
Celera1751,036,357 - 51,048,455 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1723.63NCBI
BYSL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38641,908,759 - 41,933,046 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl641,921,499 - 41,933,046 (+)EnsemblGRCh38hg38GRCh38
GRCh37641,889,237 - 41,900,784 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36641,996,943 - 42,008,762 (+)NCBINCBI36Build 36hg18NCBI36
Build 34641,996,942 - 42,008,760NCBI
Celera643,441,757 - 43,453,576 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef641,607,755 - 41,619,629 (+)NCBIHuRef
CHM1_1641,891,723 - 41,903,544 (+)NCBICHM1_1
T2T-CHM13v2.0641,737,319 - 41,761,606 (+)NCBIT2T-CHM13v2.0
Bysl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,880,341 - 20,890,092 (+)NCBIGRCr8
mRatBN7.2913,382,806 - 13,392,557 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl913,382,557 - 13,394,339 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx921,962,562 - 21,972,307 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0927,026,687 - 27,036,467 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0925,325,963 - 25,335,708 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0915,393,461 - 15,403,212 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl915,393,330 - 15,403,117 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0914,314,823 - 14,324,574 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera911,134,028 - 11,143,788 (+)NCBICelera
Cytogenetic Map9q12NCBI
Bysl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554378,257,081 - 8,266,875 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554378,257,081 - 8,266,627 (+)NCBIChiLan1.0ChiLan1.0
BYSL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2556,412,841 - 56,424,402 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1652,282,749 - 52,294,313 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0641,504,652 - 41,516,541 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1642,806,531 - 42,818,684 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl642,806,531 - 42,821,518 (+)Ensemblpanpan1.1panPan2
BYSL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11210,580,881 - 10,592,313 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1210,581,217 - 10,591,923 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1210,610,184 - 10,621,641 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01211,061,584 - 11,073,073 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1211,061,612 - 11,074,256 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11210,591,612 - 10,603,068 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01210,675,587 - 10,687,032 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01210,769,509 - 10,780,999 (+)NCBIUU_Cfam_GSD_1.0
Bysl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494646,063,609 - 46,073,118 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647617,888,335 - 17,896,268 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647617,887,998 - 17,896,598 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BYSL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl737,074,515 - 37,088,533 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1737,074,517 - 37,086,753 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2742,476,640 - 42,487,309 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BYSL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11730,230,001 - 30,241,684 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1730,230,337 - 30,241,417 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604441,921,109 - 41,933,105 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bysl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475417,195,251 - 17,205,198 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475417,195,248 - 17,204,827 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bysl
453 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1020
Count of miRNA genes:557
Interacting mature miRNAs:679
Transcripts:ENSMUST00000024783
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3098790348039703Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173311897454107028Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173596629469966424Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173678974370789743Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173871288772712970Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173880562672805626Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173880562672805626Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4053444774534623Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174093918774939187Mouse
4141478Hbnr7_mHeligmosomoides bakeri nematode resistance 7 (mouse)Not determined4305118551739122Mouse
26884386Skwq13_mskull length QTL 13, 16 week (mouse)174371089153107028Mouse
26884390Skwq9_mskull length QTL 9, 10 week (mouse)174371089167806995Mouse
12903997Cfq4_mconditioned fear QTL 4 (mouse)174501655249366402Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse
35673315Ari1_mantibody response to influenza 1, day 7, IgG2a+IgG2c (mouse)174731092654707028Mouse

Markers in Region
AW146355  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381747,599,396 - 47,599,541UniSTSGRCm38
MGSCv371747,736,345 - 47,736,490UniSTSGRCm37
Celera1751,036,422 - 51,036,567UniSTS
Cytogenetic Map17CUniSTS
cM Map1728.8UniSTS
cM Map1722.5UniSTS
Whitehead/MRC_RH17588.7UniSTS
RH124354  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381747,599,397 - 47,599,683UniSTSGRCm38
GRCm384139,344,398 - 139,344,672UniSTSGRCm38
MGSCv374138,900,313 - 138,900,587UniSTSGRCm37
MGSCv371747,736,346 - 47,736,632UniSTSGRCm37
Celera1751,036,423 - 51,036,709UniSTS
Celera4141,131,620 - 141,131,894UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map17CUniSTS
cM Map1722.5UniSTS
cM Map1728.8UniSTS
RH125472  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381747,599,108 - 47,599,346UniSTSGRCm38
MGSCv371747,736,057 - 47,736,295UniSTSGRCm37
Celera1751,036,134 - 51,036,372UniSTS
Cytogenetic Map17CUniSTS
cM Map1722.5UniSTS
cM Map1728.8UniSTS
Bysl  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17CUniSTS
cM Map1722.5UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000024783   ⟹   ENSMUSP00000024783
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1747,910,256 - 47,922,417 (-)Ensembl
GRCm38.p6 Ensembl1747,599,331 - 47,611,492 (-)Ensembl
RefSeq Acc Id: NM_016859   ⟹   NP_058555
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391747,910,256 - 47,922,417 (-)NCBI
GRCm381747,599,331 - 47,611,492 (-)ENTREZGENE
MGSCv371747,736,280 - 47,748,441 (-)RGD
Celera1751,036,357 - 51,048,455 (-)RGD
cM Map17 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_058555   ⟸   NM_016859
- UniProtKB: Q3UPY9 (UniProtKB/Swiss-Prot),   Q3THF4 (UniProtKB/Swiss-Prot),   Q8VD68 (UniProtKB/Swiss-Prot),   O54825 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000024783   ⟸   ENSMUST00000024783

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O54825-F1-model_v2 AlphaFold O54825 1-436 view protein structure

Promoters
RGD ID:13676296
Promoter ID:EPDNEW_M22297
Type:multiple initiation site
Name:Bysl_1
Description:Mus musculus bystin-like , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22298  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381747,611,238 - 47,611,298EPDNEW
RGD ID:13676298
Promoter ID:EPDNEW_M22298
Type:initiation region
Name:Bysl_2
Description:Mus musculus bystin-like , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22297  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381747,611,481 - 47,611,541EPDNEW
RGD ID:6847360
Promoter ID:MM_ACW:22956
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   Brain
Transcripts:BYSL.BSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361747,736,339 - 47,736,839 (-)MPROMDB
RGD ID:6827905
Promoter ID:MM_KWN:23709
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_016859,   OTTMUST00000044299,   OTTMUST00000044300,   OTTMUST00000044302,   OTTMUST00000044303,   UC008CVR.1,   UC008CVT.1,   UC008CVU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361747,747,696 - 47,750,227 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858419 AgrOrtholog
Ensembl Genes ENSMUSG00000023988 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000024783 ENTREZGENE
  ENSMUST00000024783.9 UniProtKB/Swiss-Prot
InterPro Bystin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:53414 UniProtKB/Swiss-Prot
MGD MGI:1858419 ENTREZGENE
NCBI Gene 53414 ENTREZGENE
PANTHER BYSTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12821 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Bystin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB BYSL RGD
PhenoGen Bysl PhenoGen
UniProt BYST_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3THF4 ENTREZGENE
  Q3UPY9 ENTREZGENE
  Q543N4_MOUSE UniProtKB/TrEMBL
  Q8VD68 ENTREZGENE
UniProt Secondary Q3THF4 UniProtKB/Swiss-Prot
  Q3UPY9 UniProtKB/Swiss-Prot
  Q8VD68 UniProtKB/Swiss-Prot