Car5b (carbonic anhydrase 5b, mitochondrial)

Gene: Car5b (carbonic anhydrase 5b, mitochondrial) Mus musculus

Analyze

Symbol:

Car5b

Name:

carbonic anhydrase 5b, mitochondrial

RGD ID:

1623247

MGI Page

MGI

Description:

Enables carbonate dehydratase activity. Acts upstream of or within response to bacterium. Located in mitochondrion. Is expressed in brain; inner ear; liver; metanephros; and trunk. Orthologous to human CA5B (carbonic anhydrase 5B).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

7330410H16Rik; CA; CA-VB; Ca5b; carbonate dehydratase VB; carbonic anhydrase VB; CarVb; CAVB; D730005F19Rik

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CA5B (carbonic anhydrase 5B)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Car5b (carbonic anhydrase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ca5b (carbonic anhydrase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CA5B (carbonic anhydrase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CA5B (carbonic anhydrase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ca5b (carbonic anhydrase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CA5B (carbonic anhydrase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CA5B (carbonic anhydrase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ca5b (carbonic anhydrase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CA5A (carbonic anhydrase 5A)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	CA5B (carbonic anhydrase 5B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Car5b (carbonic anhydrase 5B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ca5a (carbonic anhydrase Va)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CAH1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cah-4	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	cah-3	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ca5b	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	162,759,818 - 162,811,006 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	162,759,818 - 162,810,993 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	163,976,822 - 164,028,010 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	163,976,822 - 164,027,997 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	160,414,754 - 160,465,942 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	159,323,196 - 159,372,102 (-)	NCBI		MGSCv36	mm8
Celera	X	147,196,469 - 147,247,766 (-)	NCBI		Celera
Cytogenetic Map	X	F5	NCBI
cM Map	X	76.03	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Fanconi anemia (ISO)

multiple congenital anomalies-hypotonia-seizures syndrome 2 (ISO)

Neurodevelopmental Disorders (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',4,4',5-pentachlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (EXP)

acetamide (ISO)

acetazolamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

butanal (ISO)

cisplatin (EXP)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

diuron (ISO)

endosulfan (ISO)

ethanol (EXP)

folic acid (ISO)

furan (ISO)

genistein (EXP)

glyphosate (ISO)

manganese(II) chloride (ISO)

methamphetamine (ISO)

methylmercury chloride (ISO)

monosodium L-glutamate (EXP)

oryzalin (ISO)

ozone (ISO)

perfluorooctanoic acid (ISO)

phenformin (ISO)

rotenone (ISO)

senecionine (EXP)

silicon dioxide (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

thapsigargin (ISO)

thioacetamide (ISO)

titanium dioxide (EXP)

triclosan (ISO)

trimellitic anhydride (EXP)

triphenyl phosphate (ISO)

tunicamycin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

one-carbon metabolic process (IBA)

response to bacterium (IEP)

Cellular Component

cytoplasm (IBA)

mitochondrion (HDA,IBA,IDA,ISO)

Molecular Function

carbonate dehydratase activity (IBA,IDA,ISO)

lyase activity (IEA)

metal ion binding (IEA)

zinc ion binding (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased body size (IAGP)

decreased circulating glucose level (IAGP)

increased circulating ammonia level (IAGP)

oxidative stress (IAGP)

premature death (IAGP)

preweaning lethality, incomplete penetrance (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10677517	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:14681479	PMID:15489334	PMID:16141072
PMID:16141073	PMID:17362527	PMID:17626619	PMID:18614015	PMID:20820888	PMID:21267068	PMID:21677750	PMID:21873635	PMID:22109883	PMID:22967998	PMID:23012479	PMID:23233153
PMID:23589845	PMID:32325033	PMID:32371981	PMID:35449600	PMID:36464834

Genomics

Comparative Map Data

Car5b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	162,759,818 - 162,811,006 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	162,759,818 - 162,810,993 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	163,976,822 - 164,028,010 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	163,976,822 - 164,027,997 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	160,414,754 - 160,465,942 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	159,323,196 - 159,372,102 (-)	NCBI		MGSCv36	mm8
Celera	X	147,196,469 - 147,247,766 (-)	NCBI		Celera
Cytogenetic Map	X	F5	NCBI
cM Map	X	76.03	NCBI

CA5B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	15,738,270 - 15,788,411 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	15,688,830 - 15,788,411 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	15,756,393 - 15,806,534 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	15,666,333 - 15,715,669 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	15,516,081 - 15,562,315	NCBI
Celera	X	19,872,853 - 19,923,232 (+)	NCBI		Celera
Cytogenetic Map	X	p22.2	NCBI
HuRef	X	13,510,606 - 13,559,489 (+)	NCBI		HuRef
CHM1_1	X	15,787,366 - 15,836,721 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	15,321,214 - 15,371,343 (+)	NCBI		T2T-CHM13v2.0

Car5b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	34,106,553 - 34,166,651 (+)	NCBI		GRCr8
mRatBN7.2	X	30,474,697 - 30,534,797 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	30,474,784 - 30,533,837 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	31,520,092 - 31,566,687 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	34,957,057 - 35,003,669 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	31,144,294 - 31,190,893 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	32,232,106 - 32,291,124 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	32,232,142 - 32,292,072 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	32,597,409 - 32,652,981 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	51,241,437 - 51,290,433 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	30,830,281 - 30,876,988 (+)	NCBI		Celera
Cytogenetic Map	X	q14	NCBI

Ca5b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955519	2,412,289 - 2,455,280 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955519	2,415,722 - 2,455,052 (-)	NCBI	ChiLan1.0	ChiLan1.0

CA5B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	17,527,320 - 17,581,111 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	17,525,852 - 17,584,497 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	8,325,881 - 8,410,506 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	15,629,967 - 15,678,112 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	15,658,816 - 15,764,323 (+)	Ensembl	panpan1.1		panPan2
PanPan1.1 Ensembl	X	15,658,816 - 15,764,323 (+)	NCBI	panpan1.1		panPan2

CA5B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	11,908,426 - 12,042,327 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	11,930,884 - 12,040,221 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	11,809,477 - 11,892,620 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	11,869,327 - 12,003,333 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	X	11,932,374 - 12,072,571 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	11,926,678 - 12,059,951 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	11,951,875 - 12,085,347 (+)	NCBI		UU_Cfam_GSD_1.0

Ca5b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	5,184,444 - 5,230,212 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	5,184,483 - 5,230,214 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	5,184,489 - 5,227,855 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CA5B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	12,224,159 - 12,365,025 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	12,295,393 - 12,332,283 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	13,188,075 - 13,222,663 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CA5B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	14,197,561 - 14,240,294 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	14,197,651 - 14,243,626 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666056	15,985,256 - 16,095,069 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ca5b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624829	457,244 - 571,168 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624829	455,731 - 572,603 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Car5b
1085 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1320
Count of miRNA genes:	687
Interacting mature miRNAs:	852
Transcripts:	ENSMUST00000033739, ENSMUST00000126650
Prediction methods:	Miranda, Pita, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558900	Bw3_m	body weight QTL 3 (mouse)			Not determined		X	133540040	165298595	Mouse
10401118	Pgia39_m	proteoglycan induced arthritis 39 (mouse)			Not determined		X	144474380	169476592	Mouse
1302000	Pgia25_m	proteoglycan induced arthritis 2 (mouse)			Not determined		X	144474380	169476592	Mouse
12738421	Lfibq17_m	liver fibrosis QTL 17 (mouse)					X	148148453	164945064	Mouse
1357619	Obsty5_m	obesity 5 (mouse)			Not determined		X	160212893	164149284	Mouse

Markers in Region

D5Mit392.1

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	7	A3	UniSTS
Cytogenetic Map	18	A1	UniSTS
Cytogenetic Map	1	G3	UniSTS
Cytogenetic Map	9	A3	UniSTS
Cytogenetic Map	7	F1	UniSTS
Cytogenetic Map	5	C1	UniSTS
Cytogenetic Map	4	D2.2	UniSTS
Cytogenetic Map	16	A3	UniSTS
Cytogenetic Map	11	E2	UniSTS
Cytogenetic Map	16	B2	UniSTS
Cytogenetic Map	6	F1	UniSTS
Cytogenetic Map	4	B1	UniSTS
Cytogenetic Map	17	D	UniSTS
Cytogenetic Map	14	C3	UniSTS
Cytogenetic Map	5	C3.3	UniSTS
Cytogenetic Map	18	A2	UniSTS
Cytogenetic Map	X	F5	UniSTS
Cytogenetic Map	2	G3	UniSTS
Cytogenetic Map	7	A2	UniSTS
Cytogenetic Map	12	A1.1	UniSTS
Cytogenetic Map	1	H6	UniSTS
Cytogenetic Map	7	D3	UniSTS
Cytogenetic Map	1	G2	UniSTS
Cytogenetic Map	X	F3	UniSTS
Cytogenetic Map	4	D3	UniSTS
Cytogenetic Map	2	F3	UniSTS
Cytogenetic Map	2	A3	UniSTS
Cytogenetic Map	4	D1	UniSTS
Cytogenetic Map	15	A1	UniSTS
Cytogenetic Map	1	A2	UniSTS
Cytogenetic Map	13	A3.1	UniSTS
Cytogenetic Map	11	B4	UniSTS
Cytogenetic Map	1	D2.3	UniSTS
Cytogenetic Map	19	C1	UniSTS
Cytogenetic Map	10	D3	UniSTS
Cytogenetic Map	2	H2	UniSTS
Cytogenetic Map	2	E1	UniSTS
cM Map	5	28.0	UniSTS
Whitehead Genetic	5	18.6	UniSTS

Car5b

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	X	F5	UniSTS
cM Map	X		UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_181315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF192978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK020181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK041253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK046691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK047984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK085670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK163076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL732294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC034413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX469932	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY121187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CD802657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	LXEJ02010713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000033739 ⟹ ENSMUSP00000033739

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	162,759,818 - 162,810,993 (-)	Ensembl
GRCm38.p6 Ensembl	X	163,976,822 - 164,027,997 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000126650

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	162,794,881 - 162,810,977 (-)	Ensembl
GRCm38.p6 Ensembl	X	164,011,885 - 164,027,981 (-)	Ensembl

RefSeq Acc Id:

NM_181315 ⟹ NP_851832

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	162,759,818 - 162,811,006 (-)	NCBI
GRCm38	X	163,976,822 - 164,028,010 (-)	ENTREZGENE
MGSCv37	X	160,414,754 - 160,465,942 (-)	RGD
Celera	X	147,196,469 - 147,247,766 (-)	RGD
cM Map	X		ENTREZGENE

Sequence:

show sequence

AGTAGCTGGTCCTGGGAAGCTAACTTGCCAGTGGCACTTGTTAAGTGCTGTTGGAGAAACGGAG
AAAAACGTCCAGGTCTTAGGTTCCCGAGCTGCTTAGCCATTGCTGGGTATTCCAAGCTAAAGAT
GGCTGTGATGAATCACCTGAGAGTGATTCTACAAGTCTCTTCGAGTACATTGCCATGGAGAAGG
TGCTGGGTTCCGAGGTTGGTGCCACGGAGGTCCTGCAGTCTCTATACCTGCACATACAGAACCA
GGAACCGAGCCTTACCTCCACTCTGGGAGAACTTGGACCTTGTTCCTGCGGGTGATCGACAATC
ACCCATCAACATCCGATGGAGGGACAGTGTTTATGACCCTGGCTTAAAACCACTCACCATTTCT
TATGACCCAGCCACCTGCCTCCACATCTGGAACAATGGGTACTCTTTTCTTGTGGAATTTGAAG
ATTCTACAGATAAATCAGTGGTCGAGGGGGGGCCCCTGGAACACAACTACCGACTGAAGCAGTT
TCATTTTCATTGGGGAGCCATTGATGCTTGGGGCTCTGAGCACACCGTGGACAGTAAATGCTAC
CCAGCAGAGCTGCACTTGGTACATTGGAACGCAGTCAAATTTGAAAGTTTTGAGGATGCAGCAC
TGGAAGAAAATGGCTTGGCTGTGATAGGTGTATTTTTAAAGCTTGGTAAACATCATAAAGAACT
ACAGAAATTGGTGGACACTTTGCCATCAATTAAGCACAAGGACACCCTGGTGGAATTTGGATCA
TTTGACCCTTCTTGTCTGATGCCTACTTGCCCAGATTACTGGACCTACTCTGGGTCTCTCACTA
CGCCGCCCCTCTCAGAGTCTGTCACCTGGATCATTAAGAAGCAGCCAGTTGAGGTTGACCGTGA
CCAGCTTGAGCAGTTTCGGACCCTGCTTTTCACTTCTGAGGGAGAGAAAGAGAAAAGAATGGTG
GACAACTTCCGCCCTCTTCAGCCGCTGATGAATCGCACAGTCCGCTCATCCTTCCGCCATGACT
ATGTGCTCAATATACAAGTGAAGCCCAAGCCAACAGCCAGCGAAGTCACCCCCTAAGACAGCAT
TCTTCAGCAGCATCTTGTTTTAATGACTATTAGCTTAAAATTTTAACTAGATTATTTTAAAACA
CAGCATTTAATAATACTTATATGTATACATTTCTATTTTTTTCTTCCTTTTTTGGGTAACATTT
CAAAATTCCTACTCTTGTAAAGCAAAGACCGGGAGACAAACGAAGAAAAACAAAAACCTGTACC
CAAATAACGTCAATCTGAGGTCACCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTGAG
ACAGGGTTTCTCTGTGTAGTCTTGGCTAGCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGA
ACTCAGAAATCCACCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCTC
AGCAGATTTACTTATTATTATATGTAAGTATGATGTAGCTGTCTTTAGACACACCAGAAGAGGG
TGTCAGGTCTCATTATGGATGGTTGTGAGCCACGGTTGCTGGGAATTGAACTCAGGACTTTCAG
AAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGTCCAGAGGTCACCCTTTCTTATG
ACAGCGTTAAGGCAGAGGAATCTGCCAGGCAGTGGTGGCGCACGGCTTTAATCCCAGCACTTGG
GAGGCAGAGACAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGAC
AGCCAGGGCTACACAGAGAAACCCTATCTCGGGGAAAAAGAAAAAAAAAAGGCAGAGGAATCTT
CATTAACTGTTAAATCTCTCTAATCTATTTCTCAGACAGTCAGAAAGACAATTTAGTTTCCTTT
TGGTTAAATGGGGGCTTAATATGAGTGCCTGATCTTGATTTTTCTGTTTGGGTCTAATTCAGGA
GCTTAGCTCACAACAAGAGGTTCTTGTGAATTTGATTTTAAAATGCCCCCCTTTTGTTCAAACT
GGTGAATTGTCTCACCTTTCATTGTTGGTCAAGTTCTTAGCTACCATCATTTGGAGGTGAATGG
CTCTCAAAGTTTAGGTGTAAACTTCCTGGTTTTAGAGTATTTCATGTCTTTTTTAAAAGAGAAG
GTCTCATCTGTGTAGCCCTGGCTGTCCTGGAAATCACTATGTAAACCAGTCTAGACTTGAACTC
ACAGAAGTCTGTCTGTCTTTGCCTCCCAAGTGCTGGGAATAAAGGCTTGTGCCACCAAGGCCAG
CTTTCATTATATTTGCTCTTTGACTGATAATAATATGTGTCATTGGAATATTAACAGAACATGC
AAGTTGCACTTATAGCAATCTGTTAGTAATTGTGTTTTTATATCTGAAATTGTGTATGTGTGTG
TGTTTTGAGACAGTGTCCCACTCTGTAGTCCAGGCTGGCCTGGAACTCATAGTTAAACTTTTGT
CTCAGTCTCTCAAGTGTACAAGGCACCACACTCAACGATTATATTTGCCTTCCTTGGCTATCCT
TTTTATTTGTGAAACAAGGTATCCTTTAGCTCAGGCTGTATTAGAAGGTGCTGTGTAGCAGGAG
CTGCTTTGAAGCTTCAGGTCCTCCTGCTTCCACATCCCAACTGCTAGCATTGCAAGTGTGCGCC
ACTCCGCTCAGCTTCAGCTCTCTTCCAGTGTTCATAGCTGTGTAGAATCACAAGTAGGGATTAC
AGTCAAACTGTTAAAAACTACCAATGGTGGTGCTACTTACCACACAAAGCCCAGGCTTCTCAGA
AAACGTCTGTGGGAGCCCAGACCAGCAAGTCCGAGCTGAATGCTGGCCATAGTTTTAGGTATAT
TTTGTTTCAAAACTTGGGTGTGAATTTTTGTATTCATACTTCTCAATGAGTATGTTTATACTAA
TCTTTAGTTGCTATTACTAGCATATGATATGTCTACTTATTATCAATTTACTGTATAGAAAATA
CATTTGGTAGTCATGGGCTGGCTCAGTGGGTAAAGACACTTGCCATGTGAACCTAAAGACCTGA
GCTTGATCCCCAGAGCTCACATAACTAACCCCACCAAATTGCTGTCTGACCAAGCATCTTTCAT
CCCATACATACAACCACATACACATTATAAATGCACACAATAATAAATAAAACTTTGGGGGACG
GTTCAAGACAGGGTTTCTCTGGATAGCCCTGGCTGTTCTGGAAACTCACTCTGTAGACCAGGCT
GGCCTAGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGACATTAAAGGTATGCGCCG
CCACTGCCTGATCTAAATAAAACTTTAAAAGAATAAAAAAGAAGCTATATTTTGTAAAAAAAAA
AAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_851832	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF08291	(Get FASTA)	NCBI Sequence Viewer
	AAH34413	(Get FASTA)	NCBI Sequence Viewer
	BAC39501	(Get FASTA)	NCBI Sequence Viewer
	EDL40764	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000033739
	ENSMUSP00000033739.5
GenBank Protein	Q9QZA0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_851832 ⟸ NM_181315
- Peptide Label:	precursor
- UniProtKB:	Q8C3J9 (UniProtKB/Swiss-Prot), Q8K014 (UniProtKB/Swiss-Prot), Q9QZA0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAVMNHLRVILQVSSSTLPWRRCWVPRLVPRRSCSLYTCTYRTRNRALPPLWENLDLVPAGDRQ SPINIRWRDSVYDPGLKPLTISYDPATCLHIWNNGYSFLVEFEDSTDKSVVEGGPLEHNYRLKQ FHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFESFEDAALEENGLAVIGVFLKLGKHHKE LQKLVDTLPSIKHKDTLVEFGSFDPSCLMPTCPDYWTYSGSLTTPPLSESVTWIIKKQPVEVDR DQLEQFRTLLFTSEGEKEKRMVDNFRPLQPLMNRTVRSSFRHDYVLNIQVKPKPTASEVTP hide sequence

RefSeq Acc Id:

ENSMUSP00000033739 ⟸ ENSMUST00000033739

Protein Domains

Alpha-carbonic anhydrase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9QZA0-F1-model_v2	AlphaFold	Q9QZA0	1-317	view protein structure

Promoters

RGD ID:

6845428

Promoter ID:

MM_KWN:62678

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4

Transcripts:

UC009UVB.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	X	160,415,581 - 160,416,177 (-)	MPROMDB

RGD ID:

6845546

Promoter ID:

MM_KWN:62679

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Kidney, Lung, MEF_B4, MEF_B6

Transcripts:

OTTMUST00000046594, OTTMUST00000046595

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	X	160,465,441 - 160,465,982 (-)	MPROMDB

RGD ID:

13681800

Promoter ID:

EPDNEW_M25049

Type:

initiation region

Name:

Car5b_1

Description:

Mus musculus carbonic anhydrase 5b, mitochondrial , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	X	164,028,010 - 164,028,070	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1926249	AgrOrtholog
Ensembl Genes	ENSMUSG00000031373	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000033739	ENTREZGENE
	ENSMUST00000033739.5	UniProtKB/Swiss-Prot
Gene3D-CATH	3.10.200.10	UniProtKB/Swiss-Prot
InterPro	CA_dom	UniProtKB/Swiss-Prot
	CA_dom_sf	UniProtKB/Swiss-Prot
	Carbonic_anhydrase_a-class	UniProtKB/Swiss-Prot
	Carbonic_anhydrase_a-class_CS	UniProtKB/Swiss-Prot
KEGG Report	mmu:56078	UniProtKB/Swiss-Prot
MGD	MGI:1926249	ENTREZGENE
NCBI Gene	56078	ENTREZGENE
PANTHER	PTHR18952	UniProtKB/Swiss-Prot
	PTHR18952:SF25	UniProtKB/Swiss-Prot
Pfam	Carb_anhydrase	UniProtKB/Swiss-Prot
PhenoGen	Car5b	PhenoGen
PROSITE	ALPHA_CA_1	UniProtKB/Swiss-Prot
	ALPHA_CA_2	UniProtKB/Swiss-Prot
SMART	Carb_anhydrase	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF51069	UniProtKB/Swiss-Prot
UniProt	CAH5B_MOUSE	UniProtKB/Swiss-Prot
	Q8C3J9	ENTREZGENE
	Q8K014	ENTREZGENE
	Q9QZA0	ENTREZGENE
UniProt Secondary	Q8C3J9	UniProtKB/Swiss-Prot
	Q8K014	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Mammalian Phenotype