Spata31 (spermatogenesis associated 31) - Rat Genome Database

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Gene: Spata31 (spermatogenesis associated 31) Mus musculus
Analyze
Symbol: Spata31
Name: spermatogenesis associated 31
RGD ID: 1623102
MGI Page MGI
Description: Predicted to enable actin binding activity. Predicted to act upstream of or within cell differentiation and spermatogenesis. Predicted to be located in acrosomal vesicle. Orthologous to several human genes including SPATA31A5 (SPATA31 subfamily A member 5); SPATA31A6 (SPATA31 subfamily A member 6); and SPATA31A7 (SPATA31 subfamily A member 7).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930458L03Rik; acrosome expressed protein 1; acrosome-expressed protein 1; acrosome-specific protein VAD1.3; Aep1; Fam7; Fam75a; family with sequence similarity 75, member A; RIKEN cDNA 4930458L03; Spa; Spata31a; spermatogenesis-associated protein 31; Vad1.3
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391365,065,220 - 65,071,009 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1365,065,220 - 65,071,008 (+)EnsemblGRCm39 Ensembl
GRCm381364,917,406 - 64,923,195 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1364,917,406 - 64,923,194 (+)EnsemblGRCm38mm10GRCm38
MGSCv371365,018,714 - 65,024,503 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361364,932,256 - 64,937,975 (+)NCBIMGSCv36mm8
Celera1366,562,718 - 66,568,601 (+)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1334.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:20850414   PMID:21267068   PMID:25930072   PMID:32212159  


Genomics

Comparative Map Data
Spata31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391365,065,220 - 65,071,009 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1365,065,220 - 65,071,008 (+)EnsemblGRCm39 Ensembl
GRCm381364,917,406 - 64,923,195 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1364,917,406 - 64,923,194 (+)EnsemblGRCm38mm10GRCm38
MGSCv371365,018,714 - 65,024,503 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361364,932,256 - 64,937,975 (+)NCBIMGSCv36mm8
Celera1366,562,718 - 66,568,601 (+)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1334.21NCBI
SPATA31A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38942,183,659 - 42,189,887 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl942,183,659 - 42,189,887 (+)EnsemblGRCh38hg38GRCh38
GRCh37943,624,502 - 43,630,730 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36943,564,496 - 43,570,753 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map9p11.2NCBI
HuRef939,190,178 - 39,193,579 (-)NCBIHuRef
CHM1_1943,563,812 - 43,570,041 (-)NCBICHM1_1
T2T-CHM13v2.0943,734,207 - 43,740,441 (+)NCBIT2T-CHM13v2.0
Spata31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr817249,433 - 255,219 (-)NCBIGRCr8
mRatBN7.217243,648 - 249,434 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl17243,654 - 249,434 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx17277,168 - 282,993 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0171,819,738 - 1,825,563 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.017274,583 - 280,408 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0172,417,700 - 2,423,486 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,417,635 - 2,423,572 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0172,400,210 - 2,405,996 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4175,716,545 - 5,722,331 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1175,716,551 - 5,717,470 (+)NCBI
Celera172,259,605 - 2,265,391 (+)NCBICelera
Cytogenetic Map17p14NCBI
LOC606788
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1169,725,958 - 69,733,216 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha170,503,611 - 70,510,854 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0169,956,795 - 69,970,784 (+)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.0169,602,645 - 69,613,140 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0170,312,079 - 70,322,573 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Spata31
131 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:67
Count of miRNA genes:64
Interacting mature miRNAs:66
Transcripts:ENSMUST00000070216
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134785347673148119Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000070216   ⟹   ENSMUSP00000097025
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1365,065,220 - 65,071,008 (+)Ensembl
GRCm38.p6 Ensembl1364,917,406 - 64,923,194 (+)Ensembl
RefSeq Acc Id: ENSMUST00000221202   ⟹   ENSMUSP00000152205
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1365,065,268 - 65,068,711 (+)Ensembl
GRCm38.p6 Ensembl1364,917,454 - 64,920,897 (+)Ensembl
RefSeq Acc Id: NM_030047   ⟹   NP_084323
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391365,065,220 - 65,071,009 (+)NCBI
GRCm381364,917,406 - 64,923,195 (+)ENTREZGENE
MGSCv371365,018,714 - 65,024,503 (+)RGD
Celera1366,562,718 - 66,568,601 (+)RGD
cM Map13 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_084323   ⟸   NM_030047
- UniProtKB: Q5MAT5 (UniProtKB/Swiss-Prot),   E9QAF0 (UniProtKB/Swiss-Prot),   Q3V0C6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000097025   ⟸   ENSMUST00000070216
RefSeq Acc Id: ENSMUSP00000152205   ⟸   ENSMUST00000221202
Protein Domains
SPATA31

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9QAF0-F1-model_v2 AlphaFold E9QAF0 1-1014 view protein structure

Promoters
RGD ID:8680656
Promoter ID:EPDNEW_M18358
Type:initiation region
Name:Spata31_1
Description:Mus musculus spermatogenesis associated 31 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381364,917,454 - 64,917,514EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1925374 AgrOrtholog
Ensembl Genes ENSMUSG00000056223 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000070216 ENTREZGENE
  ENSMUST00000070216.9 UniProtKB/Swiss-Prot
  ENSMUST00000221202.2 UniProtKB/TrEMBL
InterPro SPATA31/FAM205 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:78124 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1925374 ENTREZGENE
NCBI Gene 78124 ENTREZGENE
PANTHER ACROSOME-SPECIFIC PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED PROTEIN 31A1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FAM75 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Spata31 PhenoGen
UniProt A0A1Y7VIY5_MOUSE UniProtKB/TrEMBL
  E9QAF0 ENTREZGENE
  Q3V0C6 ENTREZGENE, UniProtKB/TrEMBL
  Q5MAT5 ENTREZGENE
  Q9CTX2_MOUSE UniProtKB/TrEMBL
  SPT31_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q5MAT5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-23 Spata31  spermatogenesis associated 31  Fam75a  family with sequence similarity 75, member A  Symbol and/or name change 5135510 APPROVED
2012-07-31 Fam75a  family with sequence similarity 75, member A  4930458L03Rik  RIKEN cDNA 4930458L03 gene  Symbol and/or name change 5135510 APPROVED