LOC606788 (spermatogenesis-associated protein 31A6) - Rat Genome Database

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Gene: LOC606788 (spermatogenesis-associated protein 31A6) Canis lupus familiaris
Analyze
Symbol: LOC606788
Name: spermatogenesis-associated protein 31A6
RGD ID: 12079154
Description: ENCODES a protein that exhibits actin binding (ortholog); FOUND IN acrosomal vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SPATA31 subfamily A, member 3; SPATA31A3; spermatogenesis-associated protein 31E1
RGD Orthologs
Human
Mouse
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1169,725,958 - 69,733,216 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha170,503,611 - 70,510,854 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0169,956,795 - 69,970,784 (+)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.0169,602,645 - 69,613,140 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0170,312,079 - 70,322,573 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC606788
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1169,725,958 - 69,733,216 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha170,503,611 - 70,510,854 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0169,956,795 - 69,970,784 (+)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.0169,602,645 - 69,613,140 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0170,312,079 - 70,322,573 (+)NCBIUU_Cfam_GSD_1.0
SPATA31A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38942,183,659 - 42,189,887 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl942,183,659 - 42,189,887 (+)EnsemblGRCh38hg38GRCh38
GRCh37943,624,502 - 43,630,730 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36943,564,496 - 43,570,753 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map9p11.2NCBI
HuRef939,190,178 - 39,193,579 (-)NCBIHuRef
CHM1_1943,563,812 - 43,570,041 (-)NCBICHM1_1
T2T-CHM13v2.0943,734,207 - 43,740,441 (+)NCBIT2T-CHM13v2.0
Spata31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391365,065,220 - 65,071,009 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1365,065,220 - 65,071,008 (+)EnsemblGRCm39 Ensembl
GRCm381364,917,406 - 64,923,195 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1364,917,406 - 64,923,194 (+)EnsemblGRCm38mm10GRCm38
MGSCv371365,018,714 - 65,024,503 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361364,932,256 - 64,937,975 (+)NCBIMGSCv36mm8
Celera1366,562,718 - 66,568,601 (+)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1334.21NCBI
Spata31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr817249,433 - 255,219 (-)NCBIGRCr8
mRatBN7.217243,648 - 249,434 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl17243,654 - 249,434 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx17277,168 - 282,993 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0171,819,738 - 1,825,563 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.017274,583 - 280,408 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0172,417,700 - 2,423,486 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,417,635 - 2,423,572 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0172,400,210 - 2,405,996 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4175,716,545 - 5,722,331 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1175,716,551 - 5,717,470 (+)NCBI
Celera172,259,605 - 2,265,391 (+)NCBICelera
Cytogenetic Map17p14NCBI

Variants

.
Variants in LOC606788
43 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8
Low
Below cutoff 2 2 1 1 3 1 3

Sequence


Reference Sequences
RefSeq Acc Id: XM_005615778   ⟹   XP_005615835
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1169,725,958 - 69,733,216 (+)NCBI
Dog10K_Boxer_Tasha170,503,611 - 70,510,854 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038526801   ⟹   XP_038382729
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0170,312,079 - 70,322,573 (+)NCBI
RefSeq Acc Id: XM_038591100   ⟹   XP_038447028
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0169,602,645 - 69,613,140 (+)NCBI
RefSeq Acc Id: XM_038654902   ⟹   XP_038510830
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0169,956,799 - 69,959,931 (+)NCBI
RefSeq Acc Id: XM_038654903   ⟹   XP_038510831
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0169,956,795 - 69,970,784 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005615835   ⟸   XM_005615778
- Peptide Label: isoform X5
- UniProtKB: A0A8C0PYQ4 (UniProtKB/TrEMBL),   A0A8P0SI61 (UniProtKB/TrEMBL),   A0A8C0R632 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038447028   ⟸   XM_038591100
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038510831   ⟸   XM_038654903
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038510830   ⟸   XM_038654902
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038382729   ⟸   XM_038526801
- Peptide Label: isoform X4
- UniProtKB: A0A8C0R632 (UniProtKB/TrEMBL)
Protein Domains
SPATA31   SPATA31F3-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013574 UniProtKB/TrEMBL
  ENSCAFG00040003480 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000021527.5 UniProtKB/TrEMBL
  ENSCAFT00040006607.1 UniProtKB/TrEMBL
InterPro DUF4599 UniProtKB/TrEMBL
  SPATA31/FAM205 UniProtKB/TrEMBL
KEGG Report cfa:606788 UniProtKB/TrEMBL
NCBI Gene LOC606788 ENTREZGENE
PANTHER ACROSOME-SPECIFIC PROTEIN UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED PROTEIN 31A1-RELATED UniProtKB/TrEMBL
Pfam DUF4599 UniProtKB/TrEMBL
  FAM75 UniProtKB/TrEMBL
UniProt A0A8C0PYQ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R632 ENTREZGENE
  A0A8P0SI61 ENTREZGENE
UniProt Secondary A0A8P0SI61 UniProtKB/TrEMBL