Ccdc106 (coiled-coil domain containing 106) - Rat Genome Database

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Gene: Ccdc106 (coiled-coil domain containing 106) Mus musculus
Analyze
Symbol: Ccdc106
Name: coiled-coil domain containing 106
RGD ID: 1622952
MGI Page MGI
Description: Predicted to be located in cytosol. Predicted to be active in nucleoplasm. Orthologous to human CCDC106 (coiled-coil domain containing 106).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BC018462; coiled-coil domain-containing protein 106; MGC27915
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3975,056,870 - 5,063,784 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl75,023,552 - 5,063,784 (+)EnsemblGRCm39 Ensembl
GRCm3875,053,842 - 5,060,785 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl75,020,553 - 5,060,785 (+)EnsemblGRCm38mm10GRCm38
MGSCv3775,008,328 - 5,012,387 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3674,660,284 - 4,663,872 (+)NCBIMGSCv36mm8
Celera74,798,816 - 4,802,876 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
nucleoplasm  (IBA,ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:20798045  
PMID:21677750   PMID:21873635   PMID:30973865  


Genomics

Comparative Map Data
Ccdc106
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3975,056,870 - 5,063,784 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl75,023,552 - 5,063,784 (+)EnsemblGRCm39 Ensembl
GRCm3875,053,842 - 5,060,785 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl75,020,553 - 5,060,785 (+)EnsemblGRCm38mm10GRCm38
MGSCv3775,008,328 - 5,012,387 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3674,660,284 - 4,663,872 (+)NCBIMGSCv36mm8
Celera74,798,816 - 4,802,876 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.92NCBI
CCDC106
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381955,647,400 - 55,653,161 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1955,641,062 - 55,653,161 (+)EnsemblGRCh38hg38GRCh38
GRCh371956,158,766 - 56,164,527 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361960,850,766 - 60,856,339 (+)NCBINCBI36Build 36hg18NCBI36
Celera1953,201,244 - 53,206,819 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1952,469,438 - 52,475,013 (+)NCBIHuRef
CHM1_11956,152,612 - 56,158,187 (+)NCBICHM1_1
T2T-CHM13v2.01958,743,329 - 58,749,089 (+)NCBIT2T-CHM13v2.0
Ccdc106
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8177,808,723 - 77,812,816 (-)NCBIGRCr8
mRatBN7.2168,779,882 - 68,783,975 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl168,779,882 - 68,786,846 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx174,124,963 - 74,129,056 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0182,689,268 - 82,693,361 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0175,837,942 - 75,842,035 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0172,331,232 - 72,338,373 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,331,491 - 72,335,855 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0176,197,686 - 76,204,845 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4167,518,530 - 67,521,713 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera168,332,195 - 68,340,446 (+)NCBICelera
Cytogenetic Map1q12NCBI
Ccdc106
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955567699,742 - 703,745 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955567699,551 - 703,745 (-)NCBIChiLan1.0ChiLan1.0
CCDC106
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22061,789,139 - 61,794,912 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11963,518,980 - 63,524,340 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01952,694,599 - 52,700,366 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11961,380,616 - 61,385,175 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1961,379,490 - 61,385,169 (+)Ensemblpanpan1.1panPan2
CCDC106
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,092,927 - 102,097,644 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,091,834 - 102,095,708 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1102,150,013 - 102,154,194 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01102,746,424 - 102,750,605 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1102,745,318 - 102,749,837 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11102,383,989 - 102,388,170 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01102,095,840 - 102,100,021 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01102,858,944 - 102,863,125 (-)NCBIUU_Cfam_GSD_1.0
Ccdc106
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093491,722,572 - 1,726,583 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936981171,119 - 176,393 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936981171,054 - 175,120 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC106
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl659,767,390 - 59,772,588 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1659,767,390 - 59,772,594 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CCDC106
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1648,238,043 - 48,243,379 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl648,239,453 - 48,242,940 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045894,613 - 900,579 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc106
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248321,762,837 - 1,766,438 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248321,762,639 - 1,766,773 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc106
134 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1190
Count of miRNA genes:463
Interacting mature miRNAs:554
Transcripts:ENSMUST00000045543, ENSMUST00000108571, ENSMUST00000123956, ENSMUST00000131368, ENSMUST00000144802, ENSMUST00000149912
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25394570Skmw58_mskeletal muscle weight 58, TA (mouse)735524286281481Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB041804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC162893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI846455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY088177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY233695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY267627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX732283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000045543   ⟹   ENSMUSP00000041033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,060,196 - 5,063,784 (+)Ensembl
GRCm38.p6 Ensembl75,057,197 - 5,060,785 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108571   ⟹   ENSMUSP00000104211
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,059,151 - 5,063,781 (+)Ensembl
GRCm38.p6 Ensembl75,056,152 - 5,060,782 (+)Ensembl
RefSeq Acc Id: ENSMUST00000207215   ⟹   ENSMUSP00000147063
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,059,915 - 5,060,823 (+)Ensembl
GRCm38.p6 Ensembl75,056,916 - 5,057,824 (+)Ensembl
RefSeq Acc Id: ENSMUST00000207974   ⟹   ENSMUSP00000146775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,059,739 - 5,063,784 (+)Ensembl
GRCm38.p6 Ensembl75,056,740 - 5,060,785 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208042   ⟹   ENSMUSP00000146998
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,059,724 - 5,062,510 (+)Ensembl
GRCm38.p6 Ensembl75,056,725 - 5,059,511 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208161   ⟹   ENSMUSP00000146642
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,059,855 - 5,061,084 (+)Ensembl
GRCm38.p6 Ensembl75,056,856 - 5,058,085 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208728   ⟹   ENSMUSP00000146978
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,023,552 - 5,062,703 (+)Ensembl
GRCm38.p6 Ensembl75,020,553 - 5,059,704 (+)Ensembl
RefSeq Acc Id: NM_001290429   ⟹   NP_001277358
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,056,870 - 5,063,784 (+)NCBI
GRCm3875,056,152 - 5,060,785 (+)NCBI
Celera74,798,242 - 4,802,876 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001290432   ⟹   NP_001277361
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,059,713 - 5,063,784 (+)NCBI
GRCm3875,056,726 - 5,060,785 (+)NCBI
Celera74,798,242 - 4,802,876 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001420706   ⟹   NP_001407635
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,056,870 - 5,063,784 (+)NCBI
RefSeq Acc Id: NM_001420707   ⟹   NP_001407636
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,056,870 - 5,063,784 (+)NCBI
RefSeq Acc Id: NM_001420708   ⟹   NP_001407637
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,059,713 - 5,063,784 (+)NCBI
RefSeq Acc Id: NM_001420709   ⟹   NP_001407638
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,056,870 - 5,063,784 (+)NCBI
RefSeq Acc Id: NM_001420710   ⟹   NP_001407639
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,059,713 - 5,063,784 (+)NCBI
RefSeq Acc Id: NM_001420711   ⟹   NP_001407640
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,059,713 - 5,063,784 (+)NCBI
RefSeq Acc Id: NM_001420712   ⟹   NP_001407641
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,059,713 - 5,063,784 (+)NCBI
RefSeq Acc Id: NM_001420713   ⟹   NP_001407642
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,059,713 - 5,063,784 (+)NCBI
RefSeq Acc Id: NM_001420714   ⟹   NP_001407643
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,059,713 - 5,063,784 (+)NCBI
RefSeq Acc Id: NM_001420715   ⟹   NP_001407644
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,059,713 - 5,063,784 (+)NCBI
RefSeq Acc Id: NM_001420716   ⟹   NP_001407645
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,059,713 - 5,063,784 (+)NCBI
RefSeq Acc Id: NM_001420717   ⟹   NP_001407646
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,059,713 - 5,063,784 (+)NCBI
RefSeq Acc Id: NM_001420718   ⟹   NP_001407647
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,059,713 - 5,063,784 (+)NCBI
RefSeq Acc Id: NM_146178   ⟹   NP_666290
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,059,713 - 5,063,784 (+)NCBI
GRCm3875,056,726 - 5,060,785 (+)NCBI
MGSCv3775,008,328 - 5,012,387 (+)RGD
Celera74,798,242 - 4,802,876 (+)NCBI
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001277358 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277361 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407635 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407636 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407637 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407638 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407639 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407640 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407641 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407642 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407643 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407644 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407645 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407646 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407647 (Get FASTA)   NCBI Sequence Viewer  
  NP_666290 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH18462 (Get FASTA)   NCBI Sequence Viewer  
  BAB93550 (Get FASTA)   NCBI Sequence Viewer  
  BAE26428 (Get FASTA)   NCBI Sequence Viewer  
  EDL31283 (Get FASTA)   NCBI Sequence Viewer  
  EDL31284 (Get FASTA)   NCBI Sequence Viewer  
  EDL31285 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000041033
  ENSMUSP00000041033.6
  ENSMUSP00000104211
  ENSMUSP00000104211.2
  ENSMUSP00000146642.2
  ENSMUSP00000146775.2
  ENSMUSP00000146978.2
  ENSMUSP00000146998.2
  ENSMUSP00000147063.2
GenBank Protein Q3ULM0 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_666290   ⟸   NM_146178
- Peptide Label: isoform b
- UniProtKB: Q8K5E2 (UniProtKB/Swiss-Prot),   Q8VEI0 (UniProtKB/Swiss-Prot),   Q3ULM0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001277358   ⟸   NM_001290429
- Peptide Label: isoform a
- UniProtKB: E9QPN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277361   ⟸   NM_001290432
- Peptide Label: isoform b
- UniProtKB: Q8K5E2 (UniProtKB/Swiss-Prot),   Q8VEI0 (UniProtKB/Swiss-Prot),   Q3ULM0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000041033   ⟸   ENSMUST00000045543
RefSeq Acc Id: ENSMUSP00000104211   ⟸   ENSMUST00000108571
RefSeq Acc Id: ENSMUSP00000146978   ⟸   ENSMUST00000208728
RefSeq Acc Id: ENSMUSP00000146642   ⟸   ENSMUST00000208161
RefSeq Acc Id: ENSMUSP00000146998   ⟸   ENSMUST00000208042
RefSeq Acc Id: ENSMUSP00000147063   ⟸   ENSMUST00000207215
RefSeq Acc Id: ENSMUSP00000146775   ⟸   ENSMUST00000207974
RefSeq Acc Id: NP_001407635   ⟸   NM_001420706
- Peptide Label: isoform a
- UniProtKB: E9QPN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407638   ⟸   NM_001420709
- Peptide Label: isoform b
- UniProtKB: Q8VEI0 (UniProtKB/Swiss-Prot),   Q8K5E2 (UniProtKB/Swiss-Prot),   Q3ULM0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001407636   ⟸   NM_001420707
- Peptide Label: isoform a
- UniProtKB: E9QPN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407637   ⟸   NM_001420708
- Peptide Label: isoform c
RefSeq Acc Id: NP_001407646   ⟸   NM_001420717
- Peptide Label: isoform d
RefSeq Acc Id: NP_001407644   ⟸   NM_001420715
- Peptide Label: isoform b
- UniProtKB: Q8VEI0 (UniProtKB/Swiss-Prot),   Q8K5E2 (UniProtKB/Swiss-Prot),   Q3ULM0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001407647   ⟸   NM_001420718
- Peptide Label: isoform e
RefSeq Acc Id: NP_001407642   ⟸   NM_001420713
- Peptide Label: isoform b
- UniProtKB: Q8VEI0 (UniProtKB/Swiss-Prot),   Q8K5E2 (UniProtKB/Swiss-Prot),   Q3ULM0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001407643   ⟸   NM_001420714
- Peptide Label: isoform b
- UniProtKB: Q8VEI0 (UniProtKB/Swiss-Prot),   Q8K5E2 (UniProtKB/Swiss-Prot),   Q3ULM0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001407641   ⟸   NM_001420712
- Peptide Label: isoform b
- UniProtKB: Q8VEI0 (UniProtKB/Swiss-Prot),   Q8K5E2 (UniProtKB/Swiss-Prot),   Q3ULM0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001407639   ⟸   NM_001420710
- Peptide Label: isoform b
- UniProtKB: Q8VEI0 (UniProtKB/Swiss-Prot),   Q8K5E2 (UniProtKB/Swiss-Prot),   Q3ULM0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001407640   ⟸   NM_001420711
- Peptide Label: isoform b
- UniProtKB: Q8VEI0 (UniProtKB/Swiss-Prot),   Q8K5E2 (UniProtKB/Swiss-Prot),   Q3ULM0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001407645   ⟸   NM_001420716
- Peptide Label: isoform b
- UniProtKB: Q8VEI0 (UniProtKB/Swiss-Prot),   Q8K5E2 (UniProtKB/Swiss-Prot),   Q3ULM0 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3ULM0-F1-model_v2 AlphaFold Q3ULM0 1-279 view protein structure

Promoters
RGD ID:6840782
Promoter ID:MM_KWN:48503
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000055430,   OTTMUST00000055432,   OTTMUST00000055433,   OTTMUST00000055434,   OTTMUST00000055435,   UC009EZQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3675,008,681 - 5,009,181 (+)MPROMDB
RGD ID:6891756
Promoter ID:EPDNEW_M9329
Type:multiple initiation site
Name:Ccdc106_1
Description:Mus musculus coiled-coil domain containing 106 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3875,056,714 - 5,056,774EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2385900 AgrOrtholog
Ensembl Genes ENSMUSG00000035228 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000045543 ENTREZGENE
  ENSMUST00000045543.8 UniProtKB/Swiss-Prot
  ENSMUST00000108571 ENTREZGENE
  ENSMUST00000108571.9 UniProtKB/TrEMBL
  ENSMUST00000207215.2 UniProtKB/TrEMBL
  ENSMUST00000207974.2 UniProtKB/Swiss-Prot
  ENSMUST00000208042.2 UniProtKB/TrEMBL
  ENSMUST00000208161.2 UniProtKB/TrEMBL
  ENSMUST00000208728.2 UniProtKB/TrEMBL
InterPro CCDC106 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:232821 UniProtKB/Swiss-Prot
MGD MGI:2385900 ENTREZGENE
NCBI Gene 232821 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 106 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16477 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CCDC106 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccdc106 PhenoGen
UniProt A0A140LI23_MOUSE UniProtKB/TrEMBL
  A0A140LIV9_MOUSE UniProtKB/TrEMBL
  A0A140LIX8_MOUSE UniProtKB/TrEMBL
  A0A140LJ38_MOUSE UniProtKB/TrEMBL
  CC106_MOUSE UniProtKB/Swiss-Prot
  E9QPN6 ENTREZGENE, UniProtKB/TrEMBL
  Q3ULM0 ENTREZGENE
  Q8K5E2 ENTREZGENE
  Q8VEI0 ENTREZGENE
UniProt Secondary Q8K5E2 UniProtKB/Swiss-Prot
  Q8VEI0 UniProtKB/Swiss-Prot