Stum (mechanosensory transduction mediator) - Rat Genome Database

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Gene: Stum (mechanosensory transduction mediator) Mus musculus
Analyze
Symbol: Stum
Name: mechanosensory transduction mediator
RGD ID: 1620442
MGI Page MGI
Description: Predicted to be located in membrane. Orthologous to human STUM (stum, mechanosensory transduction mediator homolog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6330403A02Rik; ENSMUSG00000056615; Gm10001; hypothetical protein LOC381310; predicted gene 10001; R75555; RIKEN cDNA 6330403A02 gene; uncharacterized membrane protein C1orf95 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,259,938 - 180,311,199 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,259,952 - 180,311,069 (-)EnsemblGRCm39 Ensembl
GRCm381180,432,373 - 180,483,519 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,432,387 - 180,483,504 (-)EnsemblGRCm38mm10GRCm38
MGSCv371182,364,366 - 182,413,635 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,270,910 - 182,320,179 (-)NCBIMGSCv36mm8
Celera1187,499,459 - 187,550,133 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12040188   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21267068  
PMID:23055939   PMID:24626929   PMID:34321664  


Genomics

Comparative Map Data
Stum
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,259,938 - 180,311,199 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,259,952 - 180,311,069 (-)EnsemblGRCm39 Ensembl
GRCm381180,432,373 - 180,483,519 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,432,387 - 180,483,504 (-)EnsemblGRCm38mm10GRCm38
MGSCv371182,364,366 - 182,413,635 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,270,910 - 182,320,179 (-)NCBIMGSCv36mm8
Celera1187,499,459 - 187,550,133 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.34NCBI
STUM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381226,548,764 - 226,609,230 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1226,548,764 - 226,609,230 (+)EnsemblGRCh38hg38GRCh38
GRCh371226,736,465 - 226,796,931 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,803,124 - 224,859,926 (+)NCBINCBI36Build 36hg18NCBI36
Celera1199,927,428 - 199,984,233 (+)NCBICelera
Cytogenetic Map1q42.12NCBI
HuRef1197,253,661 - 197,314,061 (+)NCBIHuRef
CHM1_11228,009,276 - 228,069,685 (+)NCBICHM1_1
T2T-CHM13v2.01225,736,874 - 225,797,353 (+)NCBIT2T-CHM13v2.0
Stum
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81394,704,074 - 94,759,097 (-)NCBIGRCr8
mRatBN7.21392,172,175 - 92,227,205 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,173,544 - 92,227,213 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01398,722,847 - 98,773,172 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1398,724,295 - 98,772,968 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013103,730,941 - 103,781,135 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,154,655 - 96,204,044 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1391,724,612 - 91,775,121 (-)NCBICelera
Cytogenetic Map13q26NCBI
Stum
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955489665,224 - 703,018 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955489665,550 - 708,553 (+)NCBIChiLan1.0ChiLan1.0
STUM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2122,914,076 - 22,991,339 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1122,862,494 - 22,939,773 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01202,007,541 - 202,068,868 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11207,046,405 - 207,061,623 (+)NCBIpanpan1.1PanPan1.1panPan2
STUM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1738,363,340 - 38,421,341 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl738,364,317 - 38,419,943 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha737,845,304 - 37,901,826 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0738,197,139 - 38,253,682 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl738,198,120 - 38,253,779 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1738,036,374 - 38,092,939 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0738,043,264 - 38,099,784 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0738,314,066 - 38,370,628 (-)NCBIUU_Cfam_GSD_1.0
Stum
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934451,387,251 - 51,458,646 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365263,288,703 - 3,353,234 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365263,288,669 - 3,354,106 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STUM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1014,295,023 - 14,345,724 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11014,294,959 - 14,351,054 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21016,690,052 - 16,741,408 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STUM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,148,091 - 3,206,855 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl253,148,972 - 3,205,407 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660553,147,850 - 3,211,828 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stum
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624807588,350 - 632,510 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624807588,322 - 637,758 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Stum
1932 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2252
Count of miRNA genes:840
Interacting mature miRNAs:1113
Transcripts:ENSMUST00000136521, ENSMUST00000179826
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
1300960Hpic2_mhaloperidol induced catalepsy 2 (mouse)Not determined1175468817181400659Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175211318195154279Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167756737189303617Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167586086191225397Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
10045887Cplaq13_mcircadian period of locomotor activity 13 (mouse)Not determined1172831765181400659Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
11532690Sluc37_msusceptibility to lung cancer 37 (mouse)1175468817194111528Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse

Markers in Region
25.MMHAP90FRA10.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,475,903 - 180,476,069UniSTSGRCm38
MGSCv371182,406,034 - 182,406,200UniSTSGRCm37
Celera1187,542,544 - 187,542,710UniSTS
Cytogenetic Map1H4UniSTS
Whitehead_YAC1 UniSTS
R75555  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,437,584 - 180,437,775UniSTSGRCm38
MGSCv371182,367,715 - 182,367,906UniSTSGRCm37
Celera1187,502,901 - 187,503,092UniSTS
Cytogenetic Map1H4UniSTS
Whitehead_YAC1 UniSTS
RH125261  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,437,483 - 180,437,680UniSTSGRCm38
MGSCv371182,367,614 - 182,367,811UniSTSGRCm37
Celera1187,502,800 - 187,502,997UniSTS
Cytogenetic Map1H4UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000136521   ⟹   ENSMUSP00000119782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,259,952 - 180,311,032 (-)Ensembl
GRCm38.p6 Ensembl1180,432,387 - 180,483,467 (-)Ensembl
RefSeq Acc Id: ENSMUST00000179826   ⟹   ENSMUSP00000137089
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,265,894 - 180,311,069 (-)Ensembl
GRCm38.p6 Ensembl1180,438,329 - 180,483,504 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210107
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,265,456 - 180,290,177 (-)Ensembl
GRCm38.p6 Ensembl1180,437,891 - 180,462,612 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210737
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,265,447 - 180,290,177 (-)Ensembl
GRCm38.p6 Ensembl1180,437,882 - 180,462,612 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211561   ⟹   ENSMUSP00000147747
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,265,248 - 180,310,894 (-)Ensembl
GRCm38.p6 Ensembl1180,437,683 - 180,483,329 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,270,133 - 180,293,446 (-)Ensembl
GRCm38.p6 Ensembl1180,442,568 - 180,465,881 (-)Ensembl
RefSeq Acc Id: NM_001081227   ⟹   NP_001074696
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,259,938 - 180,311,069 (-)NCBI
GRCm381180,432,373 - 180,483,504 (-)NCBI
MGSCv371182,364,366 - 182,413,635 (-)RGD
Celera1187,497,557 - 187,550,133 (-)ENTREZGENE
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496913   ⟹   XP_006496976
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,259,946 - 180,311,199 (-)NCBI
GRCm381180,432,381 - 180,483,519 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496914   ⟹   XP_006496977
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,259,946 - 180,311,199 (-)NCBI
GRCm381180,432,381 - 180,483,514 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001074696   ⟸   NM_001081227
- UniProtKB: Q0VBF8 (UniProtKB/Swiss-Prot),   J3QP43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496976   ⟸   XM_006496913
- Peptide Label: isoform X1
- UniProtKB: A0A1B0GS08 (UniProtKB/TrEMBL),   J3QP43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496977   ⟸   XM_006496914
- Peptide Label: isoform X2
- UniProtKB: J3QP43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000147747   ⟸   ENSMUST00000211561
RefSeq Acc Id: ENSMUSP00000137089   ⟸   ENSMUST00000179826
RefSeq Acc Id: ENSMUSP00000119782   ⟸   ENSMUST00000136521

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q0VBF8-F1-model_v2 AlphaFold Q0VBF8 1-141 view protein structure

Promoters
RGD ID:6875920
Promoter ID:EPDNEW_M1411
Type:initiation region
Name:Stum_1
Description:Mus musculus mechanosensory transduction mediator , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381180,483,427 - 180,483,487EPDNEW
RGD ID:6817770
Promoter ID:MM_KWN:3122
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain
Transcripts:AK038867_GM10001
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361182,362,831 - 182,364,832 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2138735 AgrOrtholog
Ensembl Genes ENSMUSG00000053963 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000136521 ENTREZGENE
  ENSMUST00000136521.2 UniProtKB/Swiss-Prot
  ENSMUST00000179826.2 UniProtKB/TrEMBL
  ENSMUST00000211561 ENTREZGENE
  ENSMUST00000211561.2 UniProtKB/TrEMBL
InterPro SPEC3/Stum UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:381310 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2138735 ENTREZGENE
NCBI Gene 381310 ENTREZGENE
PANTHER PROTEIN STUM HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21676 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Spec3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Stum PhenoGen
UniProt A0A1B0GS08 ENTREZGENE, UniProtKB/TrEMBL
  J3QP43 ENTREZGENE, UniProtKB/TrEMBL
  Q0VBF8 ENTREZGENE
  Q8CAF6_MOUSE UniProtKB/TrEMBL
  Q8CCZ7_MOUSE UniProtKB/TrEMBL
  STUM_MOUSE UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-21 Stum  mechanosensory transduction mediator  6330403A02Rik  RIKEN cDNA 6330403A02 gene  Symbol and/or name change 5135510 APPROVED
2016-03-09 6330403A02Rik  RIKEN cDNA 6330403A02 gene  Gm10001  predicted gene 10001  Data merged from RGD:1616877 737654 PROVISIONAL