STUM (stum, mechanosensory transduction mediator homolog) - Rat Genome Database

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Gene: STUM (stum, mechanosensory transduction mediator homolog) Pan paniscus
Analyze
Symbol: STUM
Name: stum, mechanosensory transduction mediator homolog
RGD ID: 11960200
Description: ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog)
Type: ncrna
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2122,914,076 - 22,991,339 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1122,862,494 - 22,939,773 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01202,007,541 - 202,068,868 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11207,046,405 - 207,061,623 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
STUM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2122,914,076 - 22,991,339 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1122,862,494 - 22,939,773 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01202,007,541 - 202,068,868 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11207,046,405 - 207,061,623 (+)NCBIpanpan1.1PanPan1.1panPan2
STUM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381226,548,764 - 226,609,230 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1226,548,764 - 226,609,230 (+)EnsemblGRCh38hg38GRCh38
GRCh371226,736,465 - 226,796,931 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,803,124 - 224,859,926 (+)NCBINCBI36Build 36hg18NCBI36
Celera1199,927,428 - 199,984,233 (+)NCBICelera
Cytogenetic Map1q42.12NCBI
HuRef1197,253,661 - 197,314,061 (+)NCBIHuRef
CHM1_11228,009,276 - 228,069,685 (+)NCBICHM1_1
T2T-CHM13v2.01225,736,874 - 225,797,353 (+)NCBIT2T-CHM13v2.0
Stum
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,259,938 - 180,311,199 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,259,952 - 180,311,069 (-)EnsemblGRCm39 Ensembl
GRCm381180,432,373 - 180,483,519 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,432,387 - 180,483,504 (-)EnsemblGRCm38mm10GRCm38
MGSCv371182,364,366 - 182,413,635 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,270,910 - 182,320,179 (-)NCBIMGSCv36mm8
Celera1187,499,459 - 187,550,133 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.34NCBI
Stum
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81394,704,074 - 94,759,097 (-)NCBIGRCr8
mRatBN7.21392,172,175 - 92,227,205 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,173,544 - 92,227,213 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01398,722,847 - 98,773,172 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1398,724,295 - 98,772,968 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013103,730,941 - 103,781,135 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,154,655 - 96,204,044 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1391,724,612 - 91,775,121 (-)NCBICelera
Cytogenetic Map13q26NCBI
Stum
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955489665,224 - 703,018 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955489665,550 - 708,553 (+)NCBIChiLan1.0ChiLan1.0
STUM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1738,363,340 - 38,421,341 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl738,364,317 - 38,419,943 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha737,845,304 - 37,901,826 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0738,197,139 - 38,253,682 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl738,198,120 - 38,253,779 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1738,036,374 - 38,092,939 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0738,043,264 - 38,099,784 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0738,314,066 - 38,370,628 (-)NCBIUU_Cfam_GSD_1.0
Stum
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934451,387,251 - 51,458,646 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365263,288,703 - 3,353,234 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365263,288,669 - 3,354,106 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STUM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1014,295,023 - 14,345,724 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11014,294,959 - 14,351,054 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21016,690,052 - 16,741,408 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STUM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,148,091 - 3,206,855 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl253,148,972 - 3,205,407 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660553,147,850 - 3,211,828 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stum
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624807588,350 - 632,510 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624807588,322 - 637,758 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_004668422
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2122,930,032 - 22,991,309 (-)NCBI
NHGRI_mPanPan1122,878,461 - 22,939,743 (-)NCBI
Mhudiblu_PPA_v01202,007,541 - 202,068,867 (+)NCBI
RefSeq Acc Id: XR_008624201
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2122,914,076 - 22,991,339 (-)NCBI
NHGRI_mPanPan1122,862,494 - 22,939,773 (-)NCBI

Additional Information

Database Acc Id Source(s)
NCBI Gene STUM ENTREZGENE