D8Ertd738e (DNA segment, Chr 8, ERATO Doi 738, expressed) - Rat Genome Database

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Gene: D8Ertd738e (DNA segment, Chr 8, ERATO Doi 738, expressed) Mus musculus
Analyze
Symbol: D8Ertd738e
Name: DNA segment, Chr 8, ERATO Doi 738, expressed
RGD ID: 1619914
MGI Page MGI
Description: Orthologous to human C19orf53 (chromosome 19 open reading frame 53).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA589584; leydig cell tumor 10 kDa protein homolog; MGC18818
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,972,862 - 84,978,340 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl884,972,867 - 84,976,348 (-)EnsemblGRCm39 Ensembl
GRCm38884,246,233 - 84,251,711 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,246,238 - 84,249,719 (-)EnsemblGRCm38mm10GRCm38
MGSCv37886,770,134 - 86,773,660 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36887,136,349 - 87,139,815 (-)NCBIMGSCv36mm8
Celera888,548,477 - 88,551,958 (-)NCBICelera
Cytogenetic Map8C2NCBI
cM Map840.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:21267068   PMID:26919559  


Genomics

Comparative Map Data
D8Ertd738e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,972,862 - 84,978,340 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl884,972,867 - 84,976,348 (-)EnsemblGRCm39 Ensembl
GRCm38884,246,233 - 84,251,711 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,246,238 - 84,249,719 (-)EnsemblGRCm38mm10GRCm38
MGSCv37886,770,134 - 86,773,660 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36887,136,349 - 87,139,815 (-)NCBIMGSCv36mm8
Celera888,548,477 - 88,551,958 (-)NCBICelera
Cytogenetic Map8C2NCBI
cM Map840.72NCBI
C19orf53
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381913,774,456 - 13,778,773 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1913,774,456 - 13,778,773 (+)EnsemblGRCh38hg38GRCh38
GRCh371913,885,270 - 13,889,587 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361913,746,257 - 13,750,587 (+)NCBINCBI36Build 36hg18NCBI36
Celera1913,779,045 - 13,783,371 (+)NCBICelera
Cytogenetic Map19p13.13NCBI
HuRef1913,456,894 - 13,461,220 (+)NCBIHuRef
CHM1_11913,885,760 - 13,890,089 (+)NCBICHM1_1
T2T-CHM13v2.01913,900,656 - 13,904,974 (+)NCBIT2T-CHM13v2.0
C19h19orf53
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,819,830 - 40,822,609 (+)NCBIGRCr8
mRatBN7.21923,914,965 - 23,919,149 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,915,013 - 23,917,821 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1930,736,073 - 30,738,858 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01931,390,482 - 31,393,267 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01933,613,229 - 33,616,022 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01925,355,815 - 25,358,594 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,355,815 - 25,358,594 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,332,003 - 36,334,782 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41925,598,805 - 25,601,584 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11925,603,630 - 25,606,410 (+)NCBI
Celera1923,463,906 - 23,466,685 (+)NCBICelera
Cytogenetic Map19q11NCBI
LOC102005462
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,590,287 - 32,592,465 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541532,590,287 - 32,592,465 (+)NCBIChiLan1.0ChiLan1.0
C20H19orf53
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22018,703,397 - 18,707,435 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11917,704,276 - 17,708,325 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01913,336,420 - 13,340,471 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11914,068,708 - 14,073,406 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1914,068,721 - 14,073,406 (+)Ensemblpanpan1.1panPan2
C20H19orf53
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,648,620 - 48,651,741 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2048,648,623 - 48,651,506 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,522,576 - 48,525,508 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02049,166,750 - 49,169,682 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,164,933 - 49,169,636 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,377,174 - 48,380,122 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02048,804,287 - 48,807,231 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,047,380 - 49,050,324 (-)NCBIUU_Cfam_GSD_1.0
CUNH19orf53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118207,817,505 - 207,820,596 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366592,533,717 - 2,537,457 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366592,534,156 - 2,536,473 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C2H19orf53
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl265,342,498 - 65,346,439 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1265,342,493 - 65,346,460 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,669,732 - 65,673,690 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH19orf53
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1612,432,532 - 12,437,133 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl612,433,130 - 12,437,131 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660747,250,499 - 7,255,524 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH19orf53
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249011,111,360 - 1,116,702 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249011,111,333 - 1,116,703 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in D8Ertd738e
194 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:235
Count of miRNA genes:192
Interacting mature miRNAs:207
Transcripts:ENSMUST00000019506
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85233484386334843Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85474046188740637Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85515925889159407Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85629887290298872Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85913640493136404Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7158942790929226Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88079340489740987Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse

Markers in Region
AA589584  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8C3UniSTS
cM Map839.0UniSTS
Whitehead/MRC_RH8997.01UniSTS
D8Ertd738e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,246,248 - 84,246,457UniSTSGRCm38
MGSCv37886,770,147 - 86,770,356UniSTSGRCm37
Celera888,548,490 - 88,548,699UniSTS
Cytogenetic Map8C3UniSTS
cM Map839.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000019506   ⟹   ENSMUSP00000019506
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl884,972,867 - 84,976,348 (-)Ensembl
GRCm38.p6 Ensembl884,246,238 - 84,249,719 (-)Ensembl
RefSeq Acc Id: NM_001007571   ⟹   NP_001007572
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,972,864 - 84,976,390 (-)NCBI
GRCm38884,246,235 - 84,249,761 (-)NCBI
MGSCv37886,770,134 - 86,773,660 (-)RGD
Celera888,548,477 - 88,551,958 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017312495   ⟹   XP_017167984
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,972,862 - 84,978,340 (-)NCBI
GRCm38884,246,233 - 84,251,711 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001007572 (Get FASTA)   NCBI Sequence Viewer  
  XP_017167984 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH24662 (Get FASTA)   NCBI Sequence Viewer  
  BAE26944 (Get FASTA)   NCBI Sequence Viewer  
  BAE39817 (Get FASTA)   NCBI Sequence Viewer  
  EDL10939 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000019506
  ENSMUSP00000019506.8
GenBank Protein Q8R1F0 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001007572   ⟸   NM_001007571
- UniProtKB: Q8R1F0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017167984   ⟸   XM_017312495
- Peptide Label: isoform X1
- UniProtKB: Q8R1F0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000019506   ⟸   ENSMUST00000019506

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R1F0-F1-model_v2 AlphaFold Q8R1F0 1-94 view protein structure

Promoters
RGD ID:8667659
Promoter ID:EPDNEW_M11861
Type:initiation region
Name:D8Ertd738e_1
Description:Mus musculus DNA segment, Chr 8, ERATO Doi 738, expressed , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38884,249,718 - 84,249,778EPDNEW
RGD ID:6842998
Promoter ID:MM_KWN:55063
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001007571,   NM_001007571_D8ERTD738E
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36886,773,154 - 86,773,654 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1289231 AgrOrtholog
Ensembl Genes ENSMUSG00000019362 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000019506 ENTREZGENE
  ENSMUST00000019506.9 UniProtKB/Swiss-Prot
InterPro UPF0390 UniProtKB/Swiss-Prot
KEGG Report mmu:101966 UniProtKB/Swiss-Prot
MGD MGI:1289231 ENTREZGENE
NCBI Gene 101966 ENTREZGENE
PANTHER LEYDIG CELL TUMOR 10 KDA PROTEIN HOMOLOG UniProtKB/Swiss-Prot
  PTHR16967 UniProtKB/Swiss-Prot
Pfam DUF2462 UniProtKB/Swiss-Prot
PhenoGen D8Ertd738e PhenoGen
UniProt L10K_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE