Gene: C19h19orf53 (similar to human chromosome 19 open reading frame 53) Rattus norvegicus
Analyze
Symbol:
C19h19orf53 (Ensembl: LOC288913)
Name:
similar to human chromosome 19 open reading frame 53 (Ensembl:similar to LEYDIG CELL TUMOR 10 KD PROTEIN)
RGD ID:
735128
Description:
Orthologous to human C19orf53 (chromosome 19 open reading frame 53); INTERACTS WITH bisphenol A; 1,2-dimethylhydrazine (ortholog); aflatoxin B1 (ortholog).
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
leydig cell tumor 10 kDa protein; LOC288913; similar to LEYDIG CELL TUMOR 10 KD PROTEIN
RGD Orthologs
Alliance Genes
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
C19orf53 (chromosome 19 open reading frame 53)
HGNC
Ensembl, HomoloGene, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):
D8Ertd738e (DNA segment, Chr 8, ERATO Doi 738, expressed)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
LOC102005462 (chromosome unknown open reading frame, human C19orf53)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
C20H19orf53 (chromosome 20 C19orf53 homolog)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
C20H19orf53 (chromosome 20 C19orf53 homolog)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
CUNH19orf53 (chromosome unknown C19orf53 homolog)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
C2H19orf53 (chromosome 2 C19orf53 homolog)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
CUNH19orf53 (chromosome unknown C19orf53 homolog)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
CUNH19orf53 (chromosome unknown C19orf53 homolog)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Homo sapiens (human):
C19orf53 (chromosome 19 open reading frame 53)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
D8Ertd738e (DNA segment, Chr 8, ERATO Doi 738, expressed)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
zgc:136864
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Caenorhabditis elegans (roundworm):
K07F5.15
Alliance
DIOPT (Ensembl Compara|PANTHER)
Xenopus tropicalis (tropical clawed frog):
c19orf53
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Latest Assembly:
mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information:
Annotation category: suggests misassembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 19 40,819,830 - 40,822,609 (+) NCBI GRCr8 mRatBN7.2 19 23,914,965 - 23,919,149 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 19 23,915,013 - 23,917,821 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 19 30,736,073 - 30,738,858 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 19 31,390,482 - 31,393,267 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 19 33,613,229 - 33,616,022 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 19 25,355,815 - 25,358,594 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 19 25,355,815 - 25,358,594 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 19 36,332,003 - 36,334,782 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 19 25,598,805 - 25,601,584 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 19 25,603,630 - 25,606,410 (+) NCBI Celera 19 23,463,906 - 23,466,685 (+) NCBI Celera Cytogenetic Map 19 q11 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Additional References at PubMed
Genomics
Comparative Map Data
C19h19orf53 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 19 40,819,830 - 40,822,609 (+) NCBI GRCr8 mRatBN7.2 19 23,914,965 - 23,919,149 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 19 23,915,013 - 23,917,821 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 19 30,736,073 - 30,738,858 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 19 31,390,482 - 31,393,267 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 19 33,613,229 - 33,616,022 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 19 25,355,815 - 25,358,594 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 19 25,355,815 - 25,358,594 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 19 36,332,003 - 36,334,782 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 19 25,598,805 - 25,601,584 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 19 25,603,630 - 25,606,410 (+) NCBI Celera 19 23,463,906 - 23,466,685 (+) NCBI Celera Cytogenetic Map 19 q11 NCBI
C19orf53 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 19 13,774,456 - 13,778,773 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 19 13,774,456 - 13,778,773 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 19 13,885,270 - 13,889,587 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 19 13,746,257 - 13,750,587 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 19 13,779,045 - 13,783,371 (+) NCBI Celera Cytogenetic Map 19 p13.13 NCBI HuRef 19 13,456,894 - 13,461,220 (+) NCBI HuRef CHM1_1 19 13,885,760 - 13,890,089 (+) NCBI CHM1_1 T2T-CHM13v2.0 19 13,900,656 - 13,904,974 (+) NCBI T2T-CHM13v2.0
D8Ertd738e (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 8 84,972,862 - 84,978,340 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 8 84,972,867 - 84,976,348 (-) Ensembl GRCm39 Ensembl GRCm38 8 84,246,233 - 84,251,711 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 8 84,246,238 - 84,249,719 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 8 86,770,134 - 86,773,660 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 8 87,136,349 - 87,139,815 (-) NCBI MGSCv36 mm8 Celera 8 88,548,477 - 88,551,958 (-) NCBI Celera Cytogenetic Map 8 C2 NCBI cM Map 8 40.72 NCBI
LOC102005462 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955415 32,590,287 - 32,592,465 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955415 32,590,287 - 32,592,465 (+) NCBI ChiLan1.0 ChiLan1.0
C20H19orf53 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 20 18,703,397 - 18,707,435 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 19 17,704,276 - 17,708,325 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 19 13,336,420 - 13,340,471 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 19 14,068,708 - 14,073,406 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 19 14,068,721 - 14,073,406 (+) Ensembl panpan1.1 panPan2
C20H19orf53 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 20 48,648,620 - 48,651,741 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 20 48,648,623 - 48,651,506 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 20 48,522,576 - 48,525,508 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 20 49,166,750 - 49,169,682 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 20 49,164,933 - 49,169,636 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 20 48,377,174 - 48,380,122 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 20 48,804,287 - 48,807,231 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 20 49,047,380 - 49,050,324 (-) NCBI UU_Cfam_GSD_1.0
CUNH19orf53 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405118 207,817,505 - 207,820,596 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936659 2,533,717 - 2,537,457 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936659 2,534,156 - 2,536,473 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
C2H19orf53 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 2 65,342,498 - 65,346,439 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 2 65,342,493 - 65,346,460 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 2 65,669,732 - 65,673,690 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
CUNH19orf53 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 6 12,432,532 - 12,437,133 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 6 12,433,130 - 12,437,131 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666074 7,250,499 - 7,255,524 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
CUNH19orf53 (Heterocephalus glaber - naked mole-rat)
miRNA Target Status
Predicted Target Of
Count of predictions: 265 Count of miRNA genes: 168 Interacting mature miRNAs: 209 Transcripts: ENSRNOT00000072494 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction