Defb47 (defensin beta 47) - Rat Genome Database

Name: Defb47
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Defb47 (defensin beta 47) Mus musculus

Analyze

Symbol:

Defb47

Name:

defensin beta 47

RGD ID:

1619471

MGI Page

MGI

Description:

Predicted to enable CCR6 chemokine receptor binding activity and chemoattractant activity. Predicted to be involved in cell chemotaxis and defense response to bacterium. Predicted to be located in cytosol. Predicted to be active in extracellular space. Is expressed in ductus deferens; prostate gland; and testis. Orthologous to human DEFB130A (defensin beta 130A) and DEFB130B (defensin beta 130B).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

beta-defensin 130-like; beta-defensin 130B; beta-defensin 47; Defb41; defensin beta 41; EG654465

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DEFB130B (defensin beta 130B)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, OMA, OrthoDB, OrthoMCL, Panther
Rattus norvegicus (Norway rat):	Defb41 (defensin beta 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Defb130b (defensin beta 130B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LOC110257049 (beta-defensin 130-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Defb130b (defensin beta 130B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	DEFB130A (defensin beta 130A)	HGNC	Ensembl, HGNC, HomoloGene, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB
Alliance orthologs ³
Homo sapiens (human):	DEFB130A (defensin beta 130A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Defb41 (defensin beta 41)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	DEFB130B (defensin beta 130B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	63,229,824 - 63,238,629 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	63,235,526 - 63,238,609 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	62,992,375 - 63,001,180 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	62,998,077 - 63,001,160 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	63,616,914 - 63,619,997 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	61,952,212 - 61,955,176 (+)	NCBI		MGSCv36	mm8
Celera	14	60,757,839 - 60,760,903 (+)	NCBI		Celera
Cytogenetic Map	14	D1	NCBI
cM Map	14	33.23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell chemotaxis (IBA)

defense response to bacterium (IBA)

Cellular Component

cytosol (ISO)

extracellular space (IBA)

Molecular Function

CCR6 chemokine receptor binding (IBA)

chemoattractant activity (IBA)

References

Additional References at PubMed

PMID:12477932	PMID:14610273	PMID:16033865	PMID:20003482	PMID:21677750	PMID:21873635	PMID:24194600	PMID:38355793

Genomics

Comparative Map Data

Defb47
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	63,229,824 - 63,238,629 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	63,235,526 - 63,238,609 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	62,992,375 - 63,001,180 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	62,998,077 - 63,001,160 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	63,616,914 - 63,619,997 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	61,952,212 - 61,955,176 (+)	NCBI		MGSCv36	mm8
Celera	14	60,757,839 - 60,760,903 (+)	NCBI		Celera
Cytogenetic Map	14	D1	NCBI
cM Map	14	33.23	NCBI

DEFB130B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	12,064,389 - 12,071,747 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	12,064,389 - 12,071,747 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	11,921,898 - 11,929,256 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	11,959,307 - 11,966,665 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Cytogenetic Map	8	p23.1	NCBI
CHM1_1	8	11,987,173 - 11,987,354 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	7,662,435 - 7,669,789 (+)	NCBI		T2T-CHM13v2.0

Defb41
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	41,430,982 - 41,435,053 (+)	NCBI		GRCr8
mRatBN7.2	15	37,254,995 - 37,259,066 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	37,255,022 - 37,257,543 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	39,120,104 - 39,122,631 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	40,270,910 - 40,273,437 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	38,715,660 - 38,718,181 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	46,179,787 - 46,182,308 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	46,179,787 - 46,182,308 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	49,945,731 - 49,948,252 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	42,267,937 - 42,270,458 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	15	36,940,730 - 36,943,251 (+)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

Defb130b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	5,079,816 - 5,121,360 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004937117	30,234 - 38,633 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC110257049
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	15	38,189,899 - 38,195,975 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Defb130b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624758	25,503,327 - 25,506,979 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Defb47
253 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	112
Count of miRNA genes:	108
Interacting mature miRNAs:	112
Transcripts:	ENSMUST00000100492
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357589	Kdnw2_m	kidney weight 2 (mouse)			Not determined		14	20887473	121269804	Mouse
1357527	Epfpq1_m	epididymal fat percentage QTL 1 (mouse)			Not determined		14	21062450	71885801	Mouse
10043886	Cia49_m	collagen induced arthritis QTL 49 (mouse)			Not determined		14	29996994	63997133	Mouse
27226774	Tibl15_m	tibia length 15, 10 week (mouse)					14	30321957	87937436	Mouse
1300909	Ath13_m	atherosclerosis 13 (mouse)			Not determined		14	30335250	64335381	Mouse
1300998	Cia17_m	collagen induced arthritis 17 (mouse)			Not determined		14	30335250	64335381	Mouse
1300625	Cosz2_m	cocaine seizure 2 (mouse)			Not determined		14	35045797	68785736	Mouse
10043887	Cia50_m	collagen induced arthritis QTL 50 (mouse)			Not determined		14	37430185	71430320	Mouse
4142419	Tgq26_m	triglyceride QTL 26 (mouse)			Not determined			40337319	74337319	Mouse
1301777	Bglq15_m	body growth late QTL 15 (mouse)			Not determined		14	42962416	76962593	Mouse
1301424	Skull21_m	skull morphology 21 (mouse)			Not determined		14	42962416	76962593	Mouse
1300805	Mors3_m	modifier of obesity related sterility 3 (mouse)			Not determined		14	43037270	77037418	Mouse
1301091	Bbaa21_m	B.burgdorferi-associated arthritis 21 (mouse)			Not determined		14	43065847	77066045	Mouse
4141400	Nilac8_m	nicotine induced locomotor activity 8 (mouse)			Not determined		14	43065847	77066045	Mouse
1300605	El5_m	epilepsy 5 (mouse)			Not determined		14	49455425	83455556	Mouse
4142364	Pbwg18_m	postnatal body weight growth 18 (mouse)			Not determined		14	52281984	86282125	Mouse
1301489	Lbm10_m	lean body mass 10 (mouse)			Not determined		14	53761296	87761529	Mouse
12880432	Fgf23lq3_m	FGF23 serum level QTL 3 (mouse)					14	53937440	87937440	Mouse
10043889	Cia52_m	collagen induced arthritis QTL 52 (mouse)			Not determined		14	56082381	90082509	Mouse
1301562	Hwq1_m	heart weight quantitative locus 1 (mouse)			Not determined		14	56546745	90546941	Mouse
1357565	wrmod1_m	wobbler modifier 1 (mouse)			Not determined		14	58179640	101859473	Mouse
11039527	Ccc2_m	colitis susceptibility in the Collaborative Cross 2 (mouse)					14	59918612	94138217	Mouse
1300666	Fembm2_m	femoral bone morphometry 2 (mouse)			Not determined		14	62397460	96397680	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001039125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017316118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030247915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030247916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC090659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC132604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC132606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ012043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000100492 ⟹ ENSMUSP00000098061

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	63,235,526 - 63,238,609 (+)	Ensembl
GRCm38.p6 Ensembl	14	62,998,077 - 63,001,160 (+)	Ensembl

RefSeq Acc Id:

NM_001039125 ⟹ NP_001034214

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	63,235,526 - 63,238,609 (+)	NCBI
GRCm38	14	62,998,077 - 63,001,160 (+)	NCBI
MGSCv37	14	63,616,914 - 63,619,997 (+)	RGD
Celera	14	60,757,839 - 60,760,903 (+)	RGD
cM Map	14		ENTREZGENE

Sequence:

show sequence

CTTCCACACTGCTGGCCACTCGACCATGCGATCCCGTTCCTTCCTGCCTGTCCTCTTCCTCTTT
GTGATGATGATGCTGAGAGGAAAGGCTGGCCTTGTCCCAGGGGAAAAGCAGTGCATTTCGTTGA
AAGGAATATGCAAAGACCTAGCGTGCACATCCTCAGACGATACTATTGGCGTATGTAACGACGT
GAAGAAGTGTTGTAGGAAGTGGTGGGTGTTTGAACCCTACCCAACACCCGTTCCCAAAGGAAAG
TCTCCTTAGAGGGAAGAACATGATAAGCCCTTCAAACTCCAGAAAACATGGACGAGCTCTGCAG
AGTTCTGCTTACTACACTCACCTTCTCCCTTGCCTGCAA

hide sequence

RefSeq Acc Id:

XM_017316118 ⟹ XP_017171607

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	63,231,996 - 63,238,629 (+)	NCBI
GRCm38	14	62,994,547 - 63,001,180 (+)	NCBI

Sequence:

show sequence

TAGAATCTGTTTGCATCCCAAGGAGATGGAAATGACAGGGCTCCACGCTATGCAATGTCCAAGG
TTTAGTAGCAAAAGAGGCATTTTACACAAGTACCTAATGTTACAGCAATTTTTATGAGTCTGCA
TGACATGTTACAAATGAAGTTCTGCCAATCTAAGGATTTAATATATTCAGCTGCACACCTAAAC
ATAAACAAGGTATGTGAGCTGAGGGGGACAGCGACTATCCACACCCTTGTGCCATAGACTGGAA
CTAACTACAGCTCAAGCGATTGTTCCTCAGCTCGCTCCTGAATTCTCTCAGTATGCCCAGACCC
AAGCCTGGCTCTGAGTGTTCCAAGATCCCTGCACAGCCGTTATGACGCAGCCATGGTAGGAAGC
ATGAGACATTGAGATGGAGAGACACTCGGAGATTCAGCACGGTGGCCATCTCCCTCAGCCTTAC
ATGCTATGACGAACCTTCTTGCTTCCATGGGACAGCCTAATAATCAAAAGGTTAAGCTTCACTG
GTCAGGAGGAACCACGGGCCCCCAGAAGTGAATAAAAACCCCCGAGCCTCACCAGCACCGACCA
CCTTCCACACTGCTGGCCACTCGACCATGCGATCCCGTTCCTTCCTGCCTGTCCTCTTCCTCTT
TGTGATGATGATGCTGAGAGGAAAGGCTGGCCTTGTCCCAGGGGAAAAGCAGTGCATTTCGTTG
AAAGGAATATGCAAAGACCTAGCGTGCACATCCTCAGACGATACTATTGGCGTATGTAACGACG
TGAAGAAGTGTTGTAGGAAGTGGTGGGTGTTTGAACCCTACCCAACACCCGTTCCCAAAGGAAA
GTCTCCTTAGAGGGAAGAACATGATAAGCCCTTCAAACTCCAGAAAACATGGACGAGCTCTGCA
GAGTTCTGCTTACTACACTCACCTTCTCCCTTGCCTGCAAATAAATATCCTGCGTCCGTA

hide sequence

RefSeq Acc Id:

XM_030247915 ⟹ XP_030103775

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	63,229,824 - 63,238,629 (+)	NCBI
GRCm38	14	62,992,375 - 63,001,180 (+)	NCBI

Sequence:

show sequence

GGCATCCCACTGATGCCAGCAAGCCACAGGGTAATCTTCACTGCCTCCTGGATGCAAGGCCAGG
CCTTCTTCCGTGAGCTTTGCCACTTTCTTCTTTATGAATCAAGTTCTCCCAGGCAACGGTAAAC
TCTACAGGTGCTTAGGTGCCTGCAGGACCTCCAGATGGGATAGAGTCGGAAAGTGGCCTTTCGT
CTCAGTTACCTTGGCTGTGGGCTTTATATGCACAAAGAGACACTGATGAAAAGCGTGCAACAGA
AAATGCCATGGGAGGATTTCTTGTAGCCCTTGAACCGGCTGCTTAGCCAGGGATGGTGTTGAAC
TTCTGCTCCTCCTGCCTCCATCTCACAAGTGCTGAGCTGCATTCCCCACCACCGCCACCCAGAT
TCATGTTCTCACTGCCATTGAGGACAGCTCGCTCCTGAATTCTCTCAGTATGCCCAGACCCAAG
CCTGGCTCTGAGTGTTCCAAGATCCCTGCACAGCCGTTATGACGCAGCCATGGTAGGAAGCATG
AGACATTGAGATGGAGAGACACTCGGAGATTCAGCACGGTGGCCATCTCCCTCAGCCTTACATG
CTATGACGAACCTTCTTGCTTCCATGGGACAGCCTAATAATCAAAAGGTTAAGCTTCACTGGTC
AGGAGGAACCACGGGCCCCCAGAAGTGAATAAAAACCCCCGAGCCTCACCAGCACCGACCACCT
TCCACACTGCTGGCCACTCGACCATGCGATCCCGTTCCTTCCTGCCTGTCCTCTTCCTCTTTGT
GATGATGATGCTGAGAGGAAAGGCTGGCCTTGTCCCAGGGGAAAAGCAGTGCATTTCGTTGAAA
GGAATATGCAAAGACCTAGCGTGCACATCCTCAGACGATACTATTGGCGTATGTAACGACGTGA
AGAAGTGTTGTAGGAAGTGGTGGGTGTTTGAACCCTACCCAACACCCGTTCCCAAAGGAAAGTC
TCCTTAGAGGGAAGAACATGATAAGCCCTTCAAACTCCAGAAAACATGGACGAGCTCTGCAGAG
TTCTGCTTACTACACTCACCTTCTCCCTTGCCTGCAAATAAATATCCTGCGTCCGTA

hide sequence

RefSeq Acc Id:

XM_030247916 ⟹ XP_030103776

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	63,229,824 - 63,238,629 (+)	NCBI
GRCm38	14	62,992,375 - 63,001,180 (+)	NCBI

Sequence:

show sequence

GGCATCCCACTGATGCCAGCAAGCCACAGGGTAATCTTCACTGCCTCCTGGATGCAAGGCCAGG
CCTTCTTCCGTGAGCTTTGCCACTTTCTTCTTTATGAATCAAGTTCTCCCAGGCAACGGTAAAC
TCTACAGGTGCTTAGGTGCCTGCAGGACCTCCAGATGGGATAGAGTCGGAAAGTGGCCTTTCGT
CTCAGTTACCTTGGCTGTGGGCTTTATATGCACAAAGAGACACTGATGAAAAGCGTGCAACAGA
AAATGCCATGGGAGGATTTCTTGTAGCCCTTGAACCGGCTGCTTAGCCAGGGATGGTGTTGAAC
TTCTGCTCCTCCTGCCTCCATCTCACAAGTGCTGAGCTGCATTCCCCACCACCGCCACCCAGAT
TCATGTTCTCACTGCCATTGAGGACAGTATGCCCAGACCCAAGCCTGGCTCTGAGTGTTCCAAG
ATCCCTGCACAGCCGTTATGACGCAGCCATGGTAGGAAGCATGAGACATTGAGATGGAGAGACA
CTCGGAGATTCAGCACGGTGGCCATCTCCCTCAGCCTTACATGCTATGACGAACCTTCTTGCTT
CCATGGGACAGCCTAATAATCAAAAGGTTAAGCTTCACTGGTCAGGAGGAACCACGGGCCCCCA
GAAGTGAATAAAAACCCCCGAGCCTCACCAGCACCGACCACCTTCCACACTGCTGGCCACTCGA
CCATGCGATCCCGTTCCTTCCTGCCTGTCCTCTTCCTCTTTGTGATGATGATGCTGAGAGGAAA
GGCTGGCCTTGTCCCAGGGGAAAAGCAGTGCATTTCGTTGAAAGGAATATGCAAAGACCTAGCG
TGCACATCCTCAGACGATACTATTGGCGTATGTAACGACGTGAAGAAGTGTTGTAGGAAGTGGT
GGGTGTTTGAACCCTACCCAACACCCGTTCCCAAAGGAAAGTCTCCTTAGAGGGAAGAACATGA
TAAGCCCTTCAAACTCCAGAAAACATGGACGAGCTCTGCAGAGTTCTGCTTACTACACTCACCT
TCTCCCTTGCCTGCAAATAAATATCCTGCGTCCGTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001034214	(Get FASTA)	NCBI Sequence Viewer
	XP_017171607	(Get FASTA)	NCBI Sequence Viewer
	XP_030103775	(Get FASTA)	NCBI Sequence Viewer
	XP_030103776	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI32605	(Get FASTA)	NCBI Sequence Viewer
	AAI32607	(Get FASTA)	NCBI Sequence Viewer
	AAY59779	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000098061
	ENSMUSP00000098061.4

RefSeq Acc Id:	NP_001034214 ⟸ NM_001039125
- Peptide Label:	precursor
- UniProtKB:	Q30KN1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSRSFLPVLFLFVMMMLRGKAGLVPGEKQCISLKGICKDLACTSSDDTIGVCNDVKKCCRKWW VFEPYPTPVPKGKSP hide sequence

RefSeq Acc Id:	XP_017171607 ⟸ XM_017316118
- Peptide Label:	isoform X1
- UniProtKB:	Q30KN1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSRSFLPVLFLFVMMMLRGKAGLVPGEKQCISLKGICKDLACTSSDDTIGVCNDVKKCCRKWW VFEPYPTPVPKGKSP hide sequence

RefSeq Acc Id:	XP_030103775 ⟸ XM_030247915
- Peptide Label:	isoform X1
- UniProtKB:	Q30KN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_030103776 ⟸ XM_030247916
- Peptide Label:	isoform X1
- UniProtKB:	Q30KN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSMUSP00000098061 ⟸ ENSMUST00000100492

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q30KN1-F1-model_v2	AlphaFold	Q30KN1	1-79	view protein structure

Promoters

RGD ID:

8682680

Promoter ID:

EPDNEW_M19370

Type:

single initiation site

Name:

Defb47_1

Description:

Mus musculus defensin beta 47 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	14	62,998,071 - 62,998,131	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:3644478	AgrOrtholog
Ensembl Genes	ENSMUSG00000075573	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000100492	ENTREZGENE
	ENSMUST00000100492.5	UniProtKB/TrEMBL
KEGG Report	mmu:654465	UniProtKB/TrEMBL
MGD	MGI:3644478	ENTREZGENE
NCBI Gene	654465	ENTREZGENE
PANTHER	BETA-DEFENSIN	UniProtKB/TrEMBL
	BETA-DEFENSIN 130A-RELATED	UniProtKB/TrEMBL
PhenoGen	Defb47	PhenoGen
Superfamily-SCOP	Defensin-like	UniProtKB/TrEMBL
UniProt	Q30KN1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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