Defb130b (defensin beta 130B) - Rat Genome Database

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Gene: Defb130b (defensin beta 130B) Ictidomys tridecemlineatus
Analyze
Symbol: Defb130b
Name: defensin beta 130B
RGD ID: 12728955
Description: FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-defensin 109-like; beta-defensin 130B; LOC106145529
RGD Orthologs
Human
Mouse
Rat
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049435,079,816 - 5,121,360 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493711730,234 - 38,633 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Defb130b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049435,079,816 - 5,121,360 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493711730,234 - 38,633 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DEFB130B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38812,064,389 - 12,071,747 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl812,064,389 - 12,071,747 (-)EnsemblGRCh38hg38GRCh38
GRCh37811,921,898 - 11,929,256 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36811,959,307 - 11,966,665 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map8p23.1NCBI
CHM1_1811,987,173 - 11,987,354 (-)NCBICHM1_1
T2T-CHM13v2.087,662,435 - 7,669,789 (+)NCBIT2T-CHM13v2.0
Defb47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391463,229,824 - 63,238,629 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1463,235,526 - 63,238,609 (+)EnsemblGRCm39 Ensembl
GRCm381462,992,375 - 63,001,180 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1462,998,077 - 63,001,160 (+)EnsemblGRCm38mm10GRCm38
MGSCv371463,616,914 - 63,619,997 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361461,952,212 - 61,955,176 (+)NCBIMGSCv36mm8
Celera1460,757,839 - 60,760,903 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.23NCBI
Defb41
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81541,430,982 - 41,435,053 (+)NCBIGRCr8
mRatBN7.21537,254,995 - 37,259,066 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1537,255,022 - 37,257,543 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1539,120,104 - 39,122,631 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01540,270,910 - 40,273,437 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01538,715,660 - 38,718,181 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01546,179,787 - 46,182,308 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1546,179,787 - 46,182,308 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01549,945,731 - 49,948,252 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41542,267,937 - 42,270,458 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1536,940,730 - 36,943,251 (+)NCBICelera
Cytogenetic Map15p12NCBI
LOC110257049
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11538,189,899 - 38,195,975 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Defb130b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475825,503,327 - 25,506,979 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040269437   ⟹   XP_040125371
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049435,079,816 - 5,121,360 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040125371 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3294244 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040125371   ⟸   XM_040269437


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC106145529 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 Defb130b  defensin beta 130B  LOC106145529  beta-defensin 109-like  Symbol and/or name change 5135510 APPROVED