Ccdc88c (coiled-coil domain containing 88C) - Rat Genome Database

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Gene: Ccdc88c (coiled-coil domain containing 88C) Mus musculus
Analyze
Symbol: Ccdc88c
Name: coiled-coil domain containing 88C
RGD ID: 1618358
MGI Page MGI
Description: Enables PDZ domain binding activity and identical protein binding activity. Involved in protein destabilization and regulation of protein phosphorylation. Predicted to be located in cell junction. Predicted to be active in centrosome and cytoplasm. Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system gland; and long bone. Human ortholog(s) of this gene implicated in hydrocephalus and spinocerebellar ataxia type 40. Orthologous to human CCDC88C (coiled-coil domain containing 88C).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0610010D24Rik; AV000935; AW324073; coiled-coil domain-containing protein 88C; Da; Daple; dvl-associating protein with a high frequency of leucine residues; DVL-binding protein DAPLE; mKIAA1509
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912100,877,778 - 100,995,610 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12100,877,782 - 100,995,315 (-)EnsemblGRCm39 Ensembl
GRCm3812100,911,519 - 101,029,351 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12100,911,523 - 101,029,056 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712102,150,910 - 102,267,193 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612101,313,750 - 101,430,033 (-)NCBIMGSCv36mm8
Celera12102,139,914 - 102,256,241 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1251.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14750955   PMID:15368895   PMID:16141072  
PMID:16141073   PMID:17967808   PMID:18799693   PMID:21267068   PMID:21873635   PMID:22643886   PMID:24194600   PMID:27626380   PMID:28671696   PMID:28746879   PMID:29229865   PMID:32325033  
PMID:32535020   PMID:32805026   PMID:33230847   PMID:33929515   PMID:34001891   PMID:34642354   PMID:34815492   PMID:36260679  


Genomics

Comparative Map Data
Ccdc88c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912100,877,778 - 100,995,610 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12100,877,782 - 100,995,315 (-)EnsemblGRCm39 Ensembl
GRCm3812100,911,519 - 101,029,351 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12100,911,523 - 101,029,056 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712102,150,910 - 102,267,193 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612101,313,750 - 101,430,033 (-)NCBIMGSCv36mm8
Celera12102,139,914 - 102,256,241 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1251.11NCBI
CCDC88C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381491,271,323 - 91,417,820 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1491,271,323 - 91,417,844 (-)EnsemblGRCh38hg38GRCh38
GRCh371491,737,667 - 91,884,164 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361490,807,420 - 90,953,886 (-)NCBINCBI36Build 36hg18NCBI36
Celera1471,786,122 - 71,932,885 (-)NCBICelera
Cytogenetic Map14q32.11-q32.12NCBI
HuRef1471,913,832 - 72,060,619 (-)NCBIHuRef
CHM1_11491,675,205 - 91,822,288 (-)NCBICHM1_1
T2T-CHM13v2.01485,496,797 - 85,643,060 (-)NCBIT2T-CHM13v2.0
Ccdc88c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86125,899,337 - 126,019,162 (-)NCBIGRCr8
mRatBN7.26120,169,752 - 120,289,459 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6120,169,738 - 120,289,555 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.06124,905,811 - 125,028,011 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6124,905,808 - 125,027,553 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06134,125,645 - 134,247,201 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46125,178,886 - 125,298,359 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16125,182,632 - 125,302,112 (-)NCBI
Celera6117,696,139 - 117,817,662 (-)NCBICelera
Cytogenetic Map6q32NCBI
Ccdc88c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543813,585,469 - 13,708,170 (-)NCBIChiLan1.0ChiLan1.0
CCDC88C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21592,421,170 - 92,567,790 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11491,637,679 - 91,784,296 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01471,897,602 - 72,044,242 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11491,244,434 - 91,389,646 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1491,244,434 - 91,393,715 (-)Ensemblpanpan1.1panPan2
CCDC88C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1862,123,934 - 62,245,485 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl862,143,029 - 62,245,491 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha861,701,555 - 61,822,949 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0862,395,697 - 62,517,160 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl862,396,575 - 62,517,106 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1862,076,207 - 62,197,551 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0862,125,945 - 62,247,414 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0862,455,092 - 62,576,740 (-)NCBIUU_Cfam_GSD_1.0
Ccdc88c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864013,666,825 - 13,780,464 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648818,289,651 - 18,402,115 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648818,288,504 - 18,402,125 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC88C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7112,917,534 - 113,045,682 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17112,917,436 - 113,030,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27119,489,813 - 119,618,584 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC88C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12469,035,317 - 69,185,353 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2469,034,992 - 69,184,800 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605356,288,470 - 56,435,028 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc88c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473411,215,357 - 11,336,413 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473411,215,274 - 11,336,535 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc88c
4336 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:284
Count of miRNA genes:136
Interacting mature miRNAs:142
Transcripts:ENSMUST00000068411, ENSMUST00000085096
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288308354120092757Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289664071120092757Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289939031120092757Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290308268120092757Mouse
12910790Pwgrq7_mpre-weaning growth rate QTL 7 (mouse)1290937367108645308Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291222515120092757Mouse
10412192Bbaa27_mB.burgdorferi-associated arthritis 27 (mouse)Not determined1291254220107308393Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292750025120092757Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292750025120092757Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292936097120092757Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293264461120092757Mouse
11039526Ccc1_mcolitis susceptibility in the Collaborative Cross 1 (mouse)1293528334111028223Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294146064120092757Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296860337120092757Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296860337120092757Mouse
4141586Ssrq6_mstress response QTL 6 (mouse)Not determined100532075102461265Mouse

Markers in Region
AW324073  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812100,911,542 - 100,911,638UniSTSGRCm38
GRCm38410,836,626 - 10,836,722UniSTSGRCm38
MGSCv3712102,149,752 - 102,149,848UniSTSGRCm37
MGSCv37410,763,773 - 10,763,869UniSTSGRCm37
Celera12102,138,756 - 102,138,852UniSTS
Celera410,651,362 - 10,651,458UniSTS
Cytogenetic Map12EUniSTS
Whitehead/MRC_RH12933.78UniSTS
AV000935  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812100,969,506 - 100,969,633UniSTSGRCm38
MGSCv3712102,207,716 - 102,207,843UniSTSGRCm37
Celera12102,196,799 - 102,196,926UniSTS
Cytogenetic Map12EUniSTS
Whitehead/MRC_RH12926.82UniSTS
UniSTS:236924  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812100,912,313 - 100,912,572UniSTSGRCm38
MGSCv3712102,150,523 - 102,150,782UniSTSGRCm37
Celera12102,139,527 - 102,139,786UniSTS
Cytogenetic Map12EUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001362342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_381542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY339881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC063255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000068411   ⟹   ENSMUSP00000068629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12100,877,782 - 100,995,315 (-)Ensembl
GRCm38.p6 Ensembl12100,911,523 - 101,029,056 (-)Ensembl
RefSeq Acc Id: ENSMUST00000085096   ⟹   ENSMUSP00000082177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12100,878,959 - 100,995,242 (-)Ensembl
GRCm38.p6 Ensembl12100,912,700 - 101,028,983 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222204
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12100,886,514 - 100,889,146 (-)Ensembl
GRCm38.p6 Ensembl12100,920,255 - 100,922,887 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223097   ⟹   ENSMUSP00000152163
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12100,935,603 - 100,995,168 (-)Ensembl
GRCm38.p6 Ensembl12100,969,344 - 101,028,909 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223235   ⟹   ENSMUSP00000152316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12100,904,305 - 100,911,432 (-)Ensembl
GRCm38.p6 Ensembl12100,938,046 - 100,945,173 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12100,935,600 - 100,948,616 (-)Ensembl
GRCm38.p6 Ensembl12100,969,341 - 100,982,357 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12100,887,786 - 100,888,873 (-)Ensembl
GRCm38.p6 Ensembl12100,921,527 - 100,922,614 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233416   ⟹   ENSMUSP00000156712
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12100,889,439 - 100,895,324 (-)Ensembl
GRCm38.p6 Ensembl12100,923,180 - 100,929,065 (-)Ensembl
RefSeq Acc Id: NM_001362342   ⟹   NP_001349271
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912100,935,600 - 100,995,150 (-)NCBI
GRCm3812100,969,341 - 101,028,891 (-)NCBI
Sequence:
RefSeq Acc Id: NM_026681   ⟹   NP_080957
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912100,877,782 - 100,995,150 (-)NCBI
GRCm3812100,911,523 - 101,028,891 (-)NCBI
MGSCv3712102,150,910 - 102,267,193 (-)RGD
Celera12102,139,914 - 102,256,241 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006516187   ⟹   XP_006516250
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912100,877,778 - 100,950,888 (-)NCBI
GRCm3812100,911,523 - 100,986,625 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516188   ⟹   XP_006516251
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912100,877,778 - 100,955,310 (-)NCBI
GRCm3812100,911,519 - 100,989,051 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244166   ⟹   XP_011242468
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912100,877,778 - 100,941,101 (-)NCBI
GRCm3812100,911,519 - 100,974,851 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157599   ⟹   XP_036013492
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912100,890,678 - 100,995,610 (-)NCBI
Sequence:
RefSeq Acc Id: XR_381542
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912100,877,778 - 100,995,610 (-)NCBI
GRCm3812100,911,519 - 101,029,351 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_080957   ⟸   NM_026681
- Peptide Label: isoform 1
- UniProtKB: Q3UVI2 (UniProtKB/Swiss-Prot),   Q6VGS5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006516251   ⟸   XM_006516188
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006516250   ⟸   XM_006516187
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011242468   ⟸   XM_011244166
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001349271   ⟸   NM_001362342
- Peptide Label: isoform 2
- UniProtKB: Q9DCU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000152316   ⟸   ENSMUST00000223235
RefSeq Acc Id: ENSMUSP00000152163   ⟸   ENSMUST00000223097
RefSeq Acc Id: ENSMUSP00000082177   ⟸   ENSMUST00000085096
RefSeq Acc Id: ENSMUSP00000068629   ⟸   ENSMUST00000068411
RefSeq Acc Id: ENSMUSP00000156712   ⟸   ENSMUST00000233416
RefSeq Acc Id: XP_036013492   ⟸   XM_036157599
- Peptide Label: isoform X4
- UniProtKB: Q80XQ1 (UniProtKB/TrEMBL)
Protein Domains
Calponin-homology (CH)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6VGS5-F1-model_v2 AlphaFold Q6VGS5 1-2009 view protein structure

Promoters
RGD ID:8679016
Promoter ID:EPDNEW_M17539
Type:initiation region
Name:Ccdc88c_1
Description:Mus musculus coiled-coil domain containing 88C , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3812101,028,891 - 101,028,951EPDNEW
RGD ID:6822793
Promoter ID:MM_KWN:12498
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:ENSMUST00000110055,   UC007OTC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612102,150,726 - 102,151,727 (-)MPROMDB
RGD ID:6822795
Promoter ID:MM_KWN:12500
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung,   Spleen
Transcripts:UC007OTD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612102,183,301 - 102,184,652 (-)MPROMDB
RGD ID:6822794
Promoter ID:MM_KWN:12501
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung,   Spleen
Transcripts:UC007OTF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612102,220,236 - 102,221,067 (-)MPROMDB
RGD ID:6822535
Promoter ID:MM_KWN:12504
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Liver,   Lung,   Spleen
Transcripts:ENSMUST00000081610,   ENSMUST00000085096,   NM_026681,   UC007OTG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612102,267,076 - 102,267,592 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915589 AgrOrtholog
Ensembl Genes ENSMUSG00000021182 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000068411 ENTREZGENE
  ENSMUST00000068411.5 UniProtKB/Swiss-Prot
  ENSMUST00000085096.10 UniProtKB/Swiss-Prot
  ENSMUST00000223097 ENTREZGENE
  ENSMUST00000223097.2 UniProtKB/TrEMBL
  ENSMUST00000223235.2 UniProtKB/TrEMBL
  ENSMUST00000233416.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOOK_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:68339 UniProtKB/Swiss-Prot
MGD MGI:1915589 ENTREZGENE
NCBI Gene 68339 ENTREZGENE
PANTHER HOOK PROTEINS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR18947:SF31 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HOOK_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccdc88c PhenoGen
PROSITE PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Hook domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1Y7VLR3_MOUSE UniProtKB/TrEMBL
  A0A3B2W7U9_MOUSE UniProtKB/TrEMBL
  DAPLE_MOUSE UniProtKB/Swiss-Prot
  Q3UVI2 ENTREZGENE
  Q6VGS5 ENTREZGENE
  Q80XQ1 ENTREZGENE, UniProtKB/TrEMBL
  Q99LN5_MOUSE UniProtKB/TrEMBL
  Q9DCU8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q3UVI2 UniProtKB/Swiss-Prot