Ccdc88c (coiled-coil domain containing 88C) - Rat Genome Database

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Gene: Ccdc88c (coiled-coil domain containing 88C) Ictidomys tridecemlineatus
Analyze
Symbol: Ccdc88c
Name: coiled-coil domain containing 88C
RGD ID: 12601030
Description: ENCODES a protein that exhibits dynein light intermediate chain binding (inferred); frizzled binding (inferred); G-protein alpha-subunit binding (inferred); INVOLVED IN positive regulation of JNK cascade (ortholog); ASSOCIATED WITH achondrogenesis type IA (ortholog); genetic disease (ortholog); hydrocephalus (ortholog); FOUND IN cell junction (inferred); centrosome (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864013,666,825 - 13,780,464 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648818,289,651 - 18,402,115 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648818,288,504 - 18,402,125 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ccdc88c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864013,666,825 - 13,780,464 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648818,289,651 - 18,402,115 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648818,288,504 - 18,402,125 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC88C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381491,271,323 - 91,417,820 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1491,271,323 - 91,417,844 (-)EnsemblGRCh38hg38GRCh38
GRCh371491,737,667 - 91,884,164 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361490,807,420 - 90,953,886 (-)NCBINCBI36Build 36hg18NCBI36
Celera1471,786,122 - 71,932,885 (-)NCBICelera
Cytogenetic Map14q32.11-q32.12NCBI
HuRef1471,913,832 - 72,060,619 (-)NCBIHuRef
CHM1_11491,675,205 - 91,822,288 (-)NCBICHM1_1
T2T-CHM13v2.01485,496,797 - 85,643,060 (-)NCBIT2T-CHM13v2.0
Ccdc88c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912100,877,778 - 100,995,610 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12100,877,782 - 100,995,315 (-)EnsemblGRCm39 Ensembl
GRCm3812100,911,519 - 101,029,351 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12100,911,523 - 101,029,056 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712102,150,910 - 102,267,193 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612101,313,750 - 101,430,033 (-)NCBIMGSCv36mm8
Celera12102,139,914 - 102,256,241 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1251.11NCBI
Ccdc88c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86125,899,337 - 126,019,162 (-)NCBIGRCr8
mRatBN7.26120,169,752 - 120,289,459 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6120,169,738 - 120,289,555 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.06124,905,811 - 125,028,011 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6124,905,808 - 125,027,553 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06134,125,645 - 134,247,201 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46125,178,886 - 125,298,359 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16125,182,632 - 125,302,112 (-)NCBI
Celera6117,696,139 - 117,817,662 (-)NCBICelera
Cytogenetic Map6q32NCBI
Ccdc88c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543813,585,469 - 13,708,170 (-)NCBIChiLan1.0ChiLan1.0
CCDC88C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21592,421,170 - 92,567,790 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11491,637,679 - 91,784,296 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01471,897,602 - 72,044,242 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11491,244,434 - 91,389,646 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1491,244,434 - 91,393,715 (-)Ensemblpanpan1.1panPan2
CCDC88C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1862,123,934 - 62,245,485 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl862,143,029 - 62,245,491 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha861,701,555 - 61,822,949 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0862,395,697 - 62,517,160 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl862,396,575 - 62,517,106 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1862,076,207 - 62,197,551 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0862,125,945 - 62,247,414 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0862,455,092 - 62,576,740 (-)NCBIUU_Cfam_GSD_1.0
CCDC88C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7112,917,534 - 113,045,682 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17112,917,436 - 113,030,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27119,489,813 - 119,618,584 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC88C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12469,035,317 - 69,185,353 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2469,034,992 - 69,184,800 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605356,288,470 - 56,435,028 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc88c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473411,215,357 - 11,336,413 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473411,215,274 - 11,336,535 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000001060   ⟹   ENSSTOP00000000947
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648818,289,651 - 18,402,115 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000036804   ⟹   ENSSTOP00000026938
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648818,289,651 - 18,402,115 (-)Ensembl
RefSeq Acc Id: XM_040274360   ⟹   XP_040130294
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864013,666,825 - 13,780,464 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040130294 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000947.3
  ENSSTOP00000026938.1
Reference Protein Sequences
RefSeq Acc Id: XP_040130294   ⟸   XM_040274360
- UniProtKB: I3LXW3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000026938   ⟸   ENSSTOT00000036804
RefSeq Acc Id: ENSSTOP00000000947   ⟸   ENSSTOT00000001060
Protein Domains
Calponin-homology (CH)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001044 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001060.3 UniProtKB/TrEMBL
  ENSSTOT00000036804.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
InterPro CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  HOOK_N UniProtKB/TrEMBL
NCBI Gene Ccdc88c ENTREZGENE
PANTHER HOOK PROTEINS UniProtKB/TrEMBL
  PTHR18947:SF31 UniProtKB/TrEMBL
Pfam HOOK_N UniProtKB/TrEMBL
PROSITE PS50021 UniProtKB/TrEMBL
Superfamily-SCOP Hook domain UniProtKB/TrEMBL
UniProt A0A287D084_ICTTR UniProtKB/TrEMBL
  I3LXW3 ENTREZGENE, UniProtKB/TrEMBL