Ptar1 (protein prenyltransferase alpha subunit repeat containing 1) - Rat Genome Database

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Gene: Ptar1 (protein prenyltransferase alpha subunit repeat containing 1) Mus musculus
Analyze
Symbol: Ptar1
Name: protein prenyltransferase alpha subunit repeat containing 1
RGD ID: 1617498
MGI Page MGI
Description: Predicted to be active in cytoplasm. Orthologous to human PTAR1 (protein prenyltransferase alpha subunit repeat containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700084D09Rik; 2010013L17Rik; 4930428J16Rik; AI449677
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391923,664,728 - 23,710,249 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1923,664,793 - 23,709,032 (+)EnsemblGRCm39 Ensembl
GRCm381923,687,361 - 23,732,885 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1923,687,429 - 23,731,668 (+)EnsemblGRCm38mm10GRCm38
MGSCv371923,761,890 - 23,795,619 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361923,754,503 - 23,787,619 (+)NCBIMGSCv36mm8
Celera1924,447,989 - 24,481,773 (+)NCBICelera
Cytogenetic Map19BNCBI
cM Map1918.45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16751776   PMID:18799693   PMID:21267068   PMID:21677750  
PMID:21873635   PMID:27568557   PMID:30590051   PMID:32968282  


Genomics

Comparative Map Data
Ptar1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391923,664,728 - 23,710,249 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1923,664,793 - 23,709,032 (+)EnsemblGRCm39 Ensembl
GRCm381923,687,361 - 23,732,885 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1923,687,429 - 23,731,668 (+)EnsemblGRCm38mm10GRCm38
MGSCv371923,761,890 - 23,795,619 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361923,754,503 - 23,787,619 (+)NCBIMGSCv36mm8
Celera1924,447,989 - 24,481,773 (+)NCBICelera
Cytogenetic Map19BNCBI
cM Map1918.45NCBI
PTAR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38969,709,525 - 69,760,011 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl969,709,522 - 69,760,011 (-)EnsemblGRCh38hg38GRCh38
GRCh37972,324,441 - 72,374,927 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36971,514,258 - 71,564,696 (-)NCBINCBI36Build 36hg18NCBI36
Celera942,914,816 - 42,965,239 (-)NCBICelera
Cytogenetic Map9q21.12NCBI
HuRef942,163,635 - 42,214,476 (-)NCBIHuRef
CHM1_1972,470,914 - 72,521,340 (-)NCBICHM1_1
T2T-CHM13v2.0981,876,142 - 81,926,623 (-)NCBIT2T-CHM13v2.0
Ptar1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81230,709,731 - 230,753,380 (+)NCBIGRCr8
mRatBN7.21221,283,306 - 221,326,861 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,283,415 - 221,327,073 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1229,717,742 - 229,767,783 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01236,647,804 - 236,697,839 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01229,465,840 - 229,515,871 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01241,501,679 - 241,557,651 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1241,501,679 - 241,557,651 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,783,205 - 248,838,996 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,024,689 - 227,069,914 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1549,387,260 - 49,387,780 (+)NCBI
Celera1218,495,472 - 218,538,509 (+)NCBICelera
Cytogenetic Map1q51NCBI
Ptar1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554343,309,811 - 3,348,226 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554343,309,819 - 3,356,746 (+)NCBIChiLan1.0ChiLan1.0
PTAR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21168,914,342 - 68,964,921 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1968,920,281 - 68,972,696 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0955,037,001 - 55,087,537 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1968,471,672 - 68,522,085 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl968,480,499 - 68,522,064 (-)Ensemblpanpan1.1panPan2
PTAR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1187,661,829 - 87,759,728 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl187,706,760 - 87,752,012 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha188,129,364 - 88,228,101 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0188,209,461 - 88,308,042 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl188,254,903 - 88,304,455 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1187,864,953 - 87,963,471 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0187,571,131 - 87,669,843 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0188,334,593 - 88,433,384 (+)NCBIUU_Cfam_GSD_1.0
Ptar1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947135,191,520 - 135,236,895 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365035,944,098 - 5,990,077 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365035,943,767 - 5,981,427 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTAR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,032,879 - 223,089,663 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,028,530 - 223,089,679 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21249,446,953 - 249,501,816 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTAR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11280,765,535 - 80,821,819 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1280,774,417 - 80,821,717 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603869,182,052 - 69,231,387 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptar1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247363,293,697 - 3,334,014 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247363,293,695 - 3,342,492 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ptar1
1568 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:201
Count of miRNA genes:164
Interacting mature miRNAs:184
Transcripts:ENSMUST00000099560
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
12801464Rta2_mretinal aging 2 (mouse)141230287425302874Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191829516252295381Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191829516252295381Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192023431454234461Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
1301197Tlyr1_mthymic lymphoma resistance 1 (mouse)Not determined192053952825313796Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
1357596Tgct3_mtesticular germ cell tumor 3 (mouse)Not determined192198409132912719Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192231332653911504Mouse

Markers in Region
AI449677  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381923,720,823 - 23,720,911UniSTSGRCm38
MGSCv371923,795,313 - 23,795,401UniSTSGRCm37
Celera1924,481,467 - 24,481,555UniSTS
Cytogenetic Map19BUniSTS
Whitehead/MRC_RH19247.37UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000067077   ⟹   ENSMUSP00000069426
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1923,700,643 - 23,702,398 (+)Ensembl
GRCm38.p6 Ensembl1923,723,279 - 23,725,034 (+)Ensembl
RefSeq Acc Id: ENSMUST00000099560   ⟹   ENSMUSP00000097156
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1923,665,108 - 23,698,376 (+)Ensembl
GRCm38.p6 Ensembl1923,687,744 - 23,721,012 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235740   ⟹   ENSMUSP00000157451
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1923,665,083 - 23,698,323 (+)Ensembl
GRCm38.p6 Ensembl1923,687,719 - 23,720,959 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236951   ⟹   ENSMUSP00000158406
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1923,664,828 - 23,697,562 (+)Ensembl
GRCm38.p6 Ensembl1923,687,464 - 23,720,198 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237333   ⟹   ENSMUSP00000157782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1923,664,793 - 23,709,032 (+)Ensembl
GRCm38.p6 Ensembl1923,687,429 - 23,731,668 (+)Ensembl
RefSeq Acc Id: NM_028208   ⟹   NP_082484
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391923,664,764 - 23,698,493 (+)NCBI
GRCm381923,687,400 - 23,721,129 (+)NCBI
MGSCv371923,761,890 - 23,795,619 (+)RGD
Celera1924,447,989 - 24,481,773 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006527361   ⟹   XP_006527424
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391923,664,728 - 23,710,249 (+)NCBI
GRCm381923,687,361 - 23,732,885 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_082484 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527424 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000069426.2
  ENSMUSP00000097156.5
  ENSMUSP00000157451.2
  ENSMUSP00000157782
  ENSMUSP00000157782.2
  ENSMUSP00000158406.2
Reference Protein Sequences
RefSeq Acc Id: NP_082484   ⟸   NM_028208
- UniProtKB: A0A494B9V8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006527424   ⟸   XM_006527361
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000157782   ⟸   ENSMUST00000237333
RefSeq Acc Id: ENSMUSP00000158406   ⟸   ENSMUST00000236951
RefSeq Acc Id: ENSMUSP00000097156   ⟸   ENSMUST00000099560
RefSeq Acc Id: ENSMUSP00000069426   ⟸   ENSMUST00000067077
RefSeq Acc Id: ENSMUSP00000157451   ⟸   ENSMUST00000235740

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A494B9V8-F1-model_v2 AlphaFold A0A494B9V8 1-424 view protein structure

Promoters
RGD ID:13679124
Promoter ID:EPDNEW_M23711
Type:initiation region
Name:Ptar1_1
Description:Mus musculus protein prenyltransferase alpha subunit repeat containing1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381923,687,445 - 23,687,505EPDNEW
RGD ID:6830345
Promoter ID:MM_KWN:26681
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000099560,   NM_028208,   UC008HAE.1,   UC008HAF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361923,761,559 - 23,762,059 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921875 AgrOrtholog
Ensembl Genes ENSMUSG00000074925 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000067077.2 UniProtKB/TrEMBL
  ENSMUST00000099560.5 UniProtKB/TrEMBL
  ENSMUST00000235740.2 UniProtKB/TrEMBL
  ENSMUST00000236951.2 UniProtKB/TrEMBL
  ENSMUST00000237333 ENTREZGENE
  ENSMUST00000237333.2 UniProtKB/TrEMBL
Gene3D-CATH Protein prenylyltransferase UniProtKB/TrEMBL
InterPro Prenyl_trans_a UniProtKB/TrEMBL
KEGG Report mmu:72351 UniProtKB/TrEMBL
MGD MGI:1921875 ENTREZGENE
NCBI Gene 72351 ENTREZGENE
PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT UniProtKB/TrEMBL
  PROTEIN PRENYLTRANSFERASE ALPHA SUBUNIT REPEAT-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam PPTA UniProtKB/TrEMBL
PhenoGen Ptar1 PhenoGen
PROSITE PFTA UniProtKB/TrEMBL
Superfamily-SCOP Protein prenylyltransferase UniProtKB/TrEMBL
UniProt A0A494B9V8 ENTREZGENE, UniProtKB/TrEMBL
  A0A494BBC8_MOUSE UniProtKB/TrEMBL
  E9QAB6_MOUSE UniProtKB/TrEMBL
  Q8C3P5_MOUSE UniProtKB/TrEMBL