Frmpd2 (FERM and PDZ domain containing 2) - Rat Genome Database

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Gene: Frmpd2 (FERM and PDZ domain containing 2) Mus musculus
Analyze
Symbol: Frmpd2
Name: FERM and PDZ domain containing 2
RGD ID: 1616475
MGI Page MGI
Description: Predicted to enable 1-phosphatidylinositol binding activity. Predicted to be involved in bicellular tight junction assembly. Predicted to be located in basolateral plasma membrane and bicellular tight junction. Is expressed in central nervous system; ganglia; and retina. Orthologous to human FRMPD2 (FERM and PDZ domain containing 2).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ENSMUSG00000071536; FERM and PDZ domain-containing protein 2; Frmp; Gm1582; Gm626; predicted gene 626
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391433,193,475 - 33,297,226 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1433,193,653 - 33,297,226 (+)EnsemblGRCm39 Ensembl
GRCm381433,483,501 - 33,575,269 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1433,471,696 - 33,575,269 (+)EnsemblGRCm38mm10GRCm38
MGSCv371434,284,882 - 34,384,044 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361432,300,788 - 32,404,360 (+)NCBIMGSCv36mm8
Celera1429,752,836 - 29,825,439 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068   PMID:31196628   PMID:38355793  


Genomics

Comparative Map Data
Frmpd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391433,193,475 - 33,297,226 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1433,193,653 - 33,297,226 (+)EnsemblGRCm39 Ensembl
GRCm381433,483,501 - 33,575,269 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1433,471,696 - 33,575,269 (+)EnsemblGRCm38mm10GRCm38
MGSCv371434,284,882 - 34,384,044 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361432,300,788 - 32,404,360 (+)NCBIMGSCv36mm8
Celera1429,752,836 - 29,825,439 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.46NCBI
FRMPD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381048,156,559 - 48,274,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1048,153,088 - 48,274,696 (-)EnsemblGRCh38hg38GRCh38
GRCh371049,364,602 - 49,482,739 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361049,034,611 - 49,152,723 (-)NCBINCBI36Build 36hg18NCBI36
Build 341049,034,607 - 49,129,806NCBI
Celera1042,962,487 - 43,068,811 (-)NCBICelera
Cytogenetic Map10q11.22NCBI
HuRef1043,635,981 - 43,747,566 (-)NCBIHuRef
HuRef1043,629,288 - 43,630,117 (-)NCBIHuRef
CHM1_11049,646,437 - 49,764,818 (-)NCBICHM1_1
T2T-CHM13v2.01048,998,450 - 49,123,638 (-)NCBIT2T-CHM13v2.0
Frmpd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8168,763,889 - 8,883,558 (+)NCBIGRCr8
mRatBN7.2168,757,642 - 8,877,307 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl168,757,705 - 8,877,303 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0169,745,171 - 9,879,490 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl169,772,688 - 9,847,444 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01611,793,571 - 11,832,623 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01611,698,696 - 11,750,655 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4169,068,307 - 9,141,670 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera166,330,578 - 6,450,050 (-)NCBICelera
Cytogenetic Map16p16NCBI
Frmpd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555561,732,134 - 1,837,060 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555561,732,140 - 1,847,956 (+)NCBIChiLan1.0ChiLan1.0
FRMPD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2860,415,130 - 60,542,431 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11060,423,765 - 60,547,732 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01045,968,125 - 46,094,690 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FRMPD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.128196,839 - 309,998 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha28421,044 - 539,662 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.028365,830 - 485,905 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.128172,901 - 285,653 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.028214,130 - 326,655 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.028300,201 - 420,038 (-)NCBIUU_Cfam_GSD_1.0
Frmpd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721380,716,359 - 80,851,521 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367281,919,128 - 2,050,930 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367281,919,161 - 2,053,794 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FRMPD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1488,864,884 - 88,966,188 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11488,847,972 - 88,966,206 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21496,575,803 - 96,625,004 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FRMPD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1943,520,355 - 43,650,045 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl943,544,323 - 43,644,831 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660483,290,194 - 3,421,723 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Frmpd2
4078 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000207581
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1433,271,999 - 33,293,144 (+)Ensembl
GRCm38.p6 Ensembl1433,550,042 - 33,571,187 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208380
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1433,287,255 - 33,297,211 (+)Ensembl
GRCm38.p6 Ensembl1433,565,298 - 33,575,254 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208577   ⟹   ENSMUSP00000146693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1433,193,765 - 33,297,226 (+)Ensembl
GRCm38.p6 Ensembl1433,471,808 - 33,575,269 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208853   ⟹   ENSMUSP00000146522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1433,193,653 - 33,222,977 (+)Ensembl
GRCm38.p6 Ensembl1433,471,696 - 33,501,020 (+)Ensembl
RefSeq Acc Id: XM_017316244   ⟹   XP_017171733
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391433,193,475 - 33,297,226 (+)NCBI
GRCm381433,483,501 - 33,575,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036158980   ⟹   XP_036014873
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391433,193,475 - 33,297,226 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036158982   ⟹   XP_036014875
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391433,193,475 - 33,297,226 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_017171733 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014873 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014875 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000146522.2
  ENSMUSP00000146693
  ENSMUSP00000146693.2
RefSeq Acc Id: XP_017171733   ⟸   XM_017316244
- Peptide Label: isoform X2
- UniProtKB: A0A140LI67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000146693   ⟸   ENSMUST00000208577
RefSeq Acc Id: ENSMUSP00000146522   ⟸   ENSMUST00000208853
RefSeq Acc Id: XP_036014873   ⟸   XM_036158980
- Peptide Label: isoform X1
- UniProtKB: A0A140LI67 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036014875   ⟸   XM_036158982
- Peptide Label: isoform X3
- UniProtKB: A0A140LI67 (UniProtKB/TrEMBL)
Protein Domains
FERM   KIND   PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A140LI67-F1-model_v2 AlphaFold A0A140LI67 1-1392 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2685472 AgrOrtholog
Ensembl Genes ENSMUSG00000108841 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000208577 ENTREZGENE
  ENSMUST00000208577.2 UniProtKB/TrEMBL
  ENSMUST00000208853.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Band_41_domain UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_3-hlx UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_central UniProtKB/TrEMBL
  FERM_domain UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/TrEMBL
  KIND_dom UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  PH_dom-like UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
MGD MGI:2685472 ENTREZGENE
NCBI Gene 268729 ENTREZGENE
PANTHER NON-SPECIFIC PROTEIN-TYROSINE KINASE UniProtKB/TrEMBL
  TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13 UniProtKB/TrEMBL
Pfam FERM_C UniProtKB/TrEMBL
  FERM_M UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
PhenoGen Frmpd2 PhenoGen
PRINTS BAND41 UniProtKB/TrEMBL
PROSITE FERM_3 UniProtKB/TrEMBL
  KIND UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
SMART B41 UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  KIND UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF47031 UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A140LHS0_MOUSE UniProtKB/TrEMBL
  A0A140LI67 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-09-13 Frmpd2  FERM and PDZ domain containing 2  Gm626  predicted gene 626  Symbol and/or name change 5135510 APPROVED