Pou2af3 (POU class 2 homeobox associating factor 3) - Rat Genome Database

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Gene: Pou2af3 (POU class 2 homeobox associating factor 3) Mus musculus
Analyze
Symbol: Pou2af3
Name: POU class 2 homeobox associating factor 3
RGD ID: 1615584
MGI Page MGI
Description: Predicted to enable DNA binding activity and transcription coactivator activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human POU2AF3 (POU class 2 homeobox associating factor 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Colca2; COLCA2 homolog; colorectal cancer-associated protein 2; Gm684; hypothetical protein LOC270157; OCA-T2; POU Class 2 homeobox-associating factor 3; predicted gene 684; uncharacterized protein C11orf93-like; uncharacterized protein LOC100502940; uncharacterized protein LOC270157
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39951,181,558 - 51,189,865 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl951,181,558 - 51,190,951 (-)EnsemblGRCm39 Ensembl
GRCm38951,270,258 - 51,278,565 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl951,270,258 - 51,278,569 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl951,270,258 - 51,279,651 (-)EnsemblGRCm38mm10GRCm38
MGSCv37951,078,363 - 51,086,470 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36951,078,363 - 51,086,470 (-)NCBIMGSCv36mm8
Celera948,557,383 - 48,565,495 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map928.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:21267068   PMID:21873635   PMID:27626380  


Genomics

Comparative Map Data
Pou2af3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39951,181,558 - 51,189,865 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl951,181,558 - 51,190,951 (-)EnsemblGRCm39 Ensembl
GRCm38951,270,258 - 51,278,565 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl951,270,258 - 51,278,569 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl951,270,258 - 51,279,651 (-)EnsemblGRCm38mm10GRCm38
MGSCv37951,078,363 - 51,086,470 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36951,078,363 - 51,086,470 (-)NCBIMGSCv36mm8
Celera948,557,383 - 48,565,495 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map928.02NCBI
POU2AF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811111,298,546 - 111,308,735 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11111,298,546 - 111,308,735 (+)EnsemblGRCh38hg38GRCh38
GRCh3711111,169,271 - 111,179,460 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611110,673,563 - 110,684,670 (+)NCBINCBI36Build 36hg18NCBI36
Celera11108,323,163 - 108,332,531 (+)NCBICelera
Cytogenetic Map11q23.1NCBI
HuRef11107,094,240 - 107,104,418 (+)NCBIHuRef
CHM1_111111,052,408 - 111,062,597 (+)NCBICHM1_1
T2T-CHM13v2.011111,308,735 - 111,318,916 (+)NCBIT2T-CHM13v2.0
Pou2af3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8860,484,596 - 60,493,475 (-)NCBIGRCr8
mRatBN7.2851,588,237 - 51,597,114 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl851,588,237 - 51,603,855 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx857,135,545 - 57,143,441 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0855,414,493 - 55,422,389 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0853,278,757 - 53,286,653 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0855,674,561 - 55,682,811 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl855,674,840 - 55,681,930 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0854,269,344 - 54,278,320 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4854,601,616 - 54,606,203 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera851,133,639 - 51,141,573 (-)NCBICelera
Cytogenetic Map8q23NCBI
Pou2af3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541213,090,206 - 13,098,826 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541213,090,206 - 13,098,642 (+)NCBIChiLan1.0ChiLan1.0
POU2AF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29112,045,940 - 112,052,522 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111113,135,317 - 113,144,594 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011106,178,653 - 106,188,354 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111110,025,156 - 110,033,358 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11110,023,207 - 110,033,060 (+)Ensemblpanpan1.1panPan2
POU2AF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1521,731,093 - 21,740,770 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha521,652,772 - 21,662,406 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0521,757,132 - 21,766,772 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl521,757,130 - 21,766,649 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1521,817,734 - 21,827,352 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0521,717,849 - 21,727,484 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0521,767,045 - 21,776,691 (-)NCBIUU_Cfam_GSD_1.0
Pou2af3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494793,599,333 - 93,607,217 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366123,098,392 - 3,107,299 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366123,098,426 - 3,106,983 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POU2AF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl939,071,706 - 39,081,486 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1939,071,994 - 39,081,493 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2943,906,134 - 43,915,519 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POU2AF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11102,636,070 - 102,646,059 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604323,326,093 - 23,335,683 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pou2af3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247846,418,838 - 6,429,937 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247846,420,522 - 6,429,875 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pou2af3
302 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:186
Count of miRNA genes:154
Interacting mature miRNAs:167
Transcripts:ENSMUST00000114427
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
1558993Tdmq1_mtype 2 diabetes modifying QTL 1 (mouse)Not determined94041959451808670Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
4141572Ntta3_mneurotensin transcript abundance 3 (mouse)Not determined4659767165831177Mouse
4141754Fecq4_mfecundity QTL 4 (mouse)Not determined94754302457805204Mouse
13515057Adip20b_madiposity 20b (mouse)94870090853791702Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse
1301051Eae9_msusceptibility to experimental allergic encephalomyelitis 9 (mouse)Not determined94942029863239852Mouse
1301049El4_mepilepsy 4 (mouse)Not determined94942029867151448Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
11080993Tglq7_mtriglyceride level QTL 7 (mouse)95011130051511300Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000114427   ⟹   ENSMUSP00000110070
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl951,181,558 - 51,189,854 (-)Ensembl
GRCm38.p6 Ensembl951,270,258 - 51,278,554 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215038   ⟹   ENSMUSP00000150539
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl951,181,558 - 51,189,854 (-)Ensembl
GRCm38.p6 Ensembl951,270,258 - 51,278,554 (-)Ensembl
RefSeq Acc Id: ENSMUST00000239415   ⟹   ENSMUSP00000159303
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl951,181,558 - 51,190,951 (-)Ensembl
GRCm38.p6 Ensembl951,270,258 - 51,279,651 (-)Ensembl
RefSeq Acc Id: NM_001195681   ⟹   NP_001182610
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39951,181,558 - 51,189,865 (-)NCBI
GRCm38951,270,258 - 51,278,554 (-)NCBI
Celera948,557,383 - 48,565,684 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001409957   ⟹   NP_001396886
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39951,181,558 - 51,189,865 (-)NCBI
RefSeq Acc Id: XM_006509896   ⟹   XP_006509959
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39951,181,558 - 51,189,266 (-)NCBI
GRCm38951,270,258 - 51,278,096 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242373   ⟹   XP_011240675
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39951,181,558 - 51,188,190 (-)NCBI
GRCm38951,270,258 - 51,276,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242374   ⟹   XP_011240676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39951,181,558 - 51,186,254 (-)NCBI
GRCm38951,270,258 - 51,274,959 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242375   ⟹   XP_011240677
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39951,181,558 - 51,186,254 (-)NCBI
GRCm38951,270,258 - 51,274,959 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001182610   ⟸   NM_001195681
- UniProtKB: A0A6I8MWX2 (UniProtKB/Swiss-Prot),   F8VPY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006509959   ⟸   XM_006509896
- Peptide Label: isoform X2
- UniProtKB: A0A6I8MWX2 (UniProtKB/Swiss-Prot),   F8VPY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011240675   ⟸   XM_011242373
- Peptide Label: isoform X1
- UniProtKB: F8VPY8 (UniProtKB/Swiss-Prot),   A0A6I8MWX2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011240676   ⟸   XM_011242374
- Peptide Label: isoform X3
- UniProtKB: F8VPY8 (UniProtKB/Swiss-Prot),   A0A6I8MWX2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011240677   ⟸   XM_011242375
- Peptide Label: isoform X3
- UniProtKB: F8VPY8 (UniProtKB/Swiss-Prot),   A0A6I8MWX2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000159303   ⟸   ENSMUST00000239415
RefSeq Acc Id: ENSMUSP00000110070   ⟸   ENSMUST00000114427
RefSeq Acc Id: ENSMUSP00000150539   ⟸   ENSMUST00000215038
RefSeq Acc Id: NP_001396886   ⟸   NM_001409957
Protein Domains
OCA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A6I8MWX2-F1-model_v2 AlphaFold A0A6I8MWX2 1-253 view protein structure

Promoters
RGD ID:6844597
Promoter ID:MM_KWN:57328
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   Brain,   Kidney,   MEF_B4,   MEF_B6
Transcripts:XM_196479_GM684
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36951,086,481 - 51,086,981 (-)MPROMDB
RGD ID:8669590
Promoter ID:EPDNEW_M12825
Type:initiation region
Name:Colca2_1
Description:Mus musculus COLCA2 homolog , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38951,278,554 - 51,278,614EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2685530 AgrOrtholog
Ensembl Genes ENSMUSG00000079559 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000114427 ENTREZGENE
  ENSMUST00000114427.4 UniProtKB/Swiss-Prot
  ENSMUST00000215038 ENTREZGENE
  ENSMUST00000215038.3 UniProtKB/Swiss-Prot
  ENSMUST00000239415 ENTREZGENE
  ENSMUST00000239415.2 UniProtKB/Swiss-Prot
InterPro COLCA2 UniProtKB/Swiss-Prot
  OCA UniProtKB/Swiss-Prot
KEGG Report mmu:100502940 UniProtKB/Swiss-Prot
MGD MGI:2685530 ENTREZGENE
NCBI Gene Gm684 ENTREZGENE
PANTHER COLCA2 HOMOLOG UniProtKB/Swiss-Prot
  PTHR36689 UniProtKB/Swiss-Prot
PhenoGen Pou2af3 PhenoGen
PROSITE OCA UniProtKB/Swiss-Prot
UniProt A0A6I8MWX2 ENTREZGENE
  F8VPY8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A6I8MWX2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-27 Pou2af3  POU class 2 homeobox associating factor 3  Colca2  COLCA2 homolog  Symbol and/or name updated 27372883 PROVISIONAL
2017-05-02 Colca2  COLCA2 homolog  Gm684  predicted gene 684  Symbol and/or name change 5135510 APPROVED