Msl1 (male specific lethal 1) - Rat Genome Database

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Gene: Msl1 (male specific lethal 1) Mus musculus
Analyze
Symbol: Msl1
Name: male specific lethal 1
RGD ID: 1614302
MGI Page MGI
Description: Predicted to enable chromatin binding activity. Involved in chromatin remodeling and positive regulation of DNA-templated transcription. Located in nuclear speck. Part of MSL complex. Is expressed in embryo. Orthologous to human MSL1 (MSL complex subunit 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810017F12Rik; 4121402D02Rik; 4930463F05Rik; AA682082; hampin; male-specific lethal 1 homolog; male-specific lethal 1 homolog (Drosophila); male-specific lethal 1-like 1; male-specific lethal-1 homolog 1; Msl-1; MSL1-like 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391198,684,214 - 98,698,685 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1198,686,342 - 98,698,685 (+)EnsemblGRCm39 Ensembl
GRCm381198,793,508 - 98,807,862 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1198,795,516 - 98,807,859 (+)EnsemblGRCm38mm10GRCm38
MGSCv371198,657,083 - 98,669,173 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361198,611,606 - 98,622,517 (+)NCBIMGSCv36mm8
Celera11108,450,534 - 108,462,629 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1162.67NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
MSL complex  (IBA,IMP,ISO)
nuclear speck  (IDA)
nucleoplasm  (IDA,ISO)
nucleus  (IDA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12698291   PMID:14610273   PMID:15782199   PMID:16119455  
PMID:16141072   PMID:16141073   PMID:16913411   PMID:17335777   PMID:18799693   PMID:19390865   PMID:21217699   PMID:21779533   PMID:21873635   PMID:22922362   PMID:23210685   PMID:23523075  
PMID:24842875   PMID:24913909   PMID:27824289   PMID:28609438   PMID:37279389  


Genomics

Comparative Map Data
Msl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391198,684,214 - 98,698,685 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1198,686,342 - 98,698,685 (+)EnsemblGRCm39 Ensembl
GRCm381198,793,508 - 98,807,862 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1198,795,516 - 98,807,859 (+)EnsemblGRCm38mm10GRCm38
MGSCv371198,657,083 - 98,669,173 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361198,611,606 - 98,622,517 (+)NCBIMGSCv36mm8
Celera11108,450,534 - 108,462,629 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1162.67NCBI
MSL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381740,121,971 - 40,136,917 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1740,121,971 - 40,136,917 (+)EnsemblGRCh38hg38GRCh38
GRCh371738,278,224 - 38,293,170 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361735,532,316 - 35,546,568 (+)NCBINCBI36Build 36hg18NCBI36
Celera1734,939,245 - 34,953,515 (+)NCBICelera
Cytogenetic Map17q21.1NCBI
HuRef1734,072,418 - 34,086,448 (+)NCBIHuRef
CHM1_11738,514,496 - 38,528,748 (+)NCBICHM1_1
T2T-CHM13v2.01740,985,855 - 41,000,801 (+)NCBIT2T-CHM13v2.0
Msl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81084,251,362 - 84,263,384 (+)NCBIGRCr8
mRatBN7.21083,755,380 - 83,767,147 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1083,755,720 - 83,765,726 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1088,699,593 - 88,709,611 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01088,197,668 - 88,207,686 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01083,590,370 - 83,600,388 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01086,710,925 - 86,722,659 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1086,711,240 - 86,721,246 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01086,507,409 - 86,518,912 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41087,568,556 - 87,578,572 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1082,503,569 - 82,513,585 (+)NCBICelera
Cytogenetic Map10q31NCBI
Msl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545114,772,224 - 14,780,839 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545114,769,893 - 14,783,213 (+)NCBIChiLan1.0ChiLan1.0
MSL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21924,818,118 - 24,833,517 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11726,712,913 - 26,727,748 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01717,152,296 - 17,167,127 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11717,373,780 - 17,387,329 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1717,373,780 - 17,387,351 (-)Ensemblpanpan1.1panPan2
MSL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1922,429,371 - 22,441,686 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl922,429,522 - 22,441,767 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha921,901,643 - 21,913,922 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0923,222,191 - 23,234,472 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl923,222,204 - 23,234,365 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1921,995,939 - 22,008,217 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0922,254,672 - 22,266,943 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0922,379,645 - 22,391,924 (-)NCBIUU_Cfam_GSD_1.0
Msl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560221,825,478 - 21,839,052 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649015,236,081 - 15,249,926 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649015,236,087 - 15,249,661 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MSL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1222,224,615 - 22,237,587 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11222,224,611 - 22,237,557 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21222,502,558 - 22,515,232 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MSL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11666,040,879 - 66,055,975 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1666,040,661 - 66,055,942 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607736,944,141 - 36,960,612 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Msl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247953,068,887 - 3,083,751 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247953,070,233 - 3,083,746 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Msl1
536 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1745
Count of miRNA genes:713
Interacting mature miRNAs:881
Transcripts:ENSMUST00000037915, ENSMUST00000037930, ENSMUST00000107485, ENSMUST00000107487, ENSMUST00000126969, ENSMUST00000141016
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
1301491Abbp4_mA/J and C57BL/6 blood pressure 4 (mouse)Not determined118869958899081597Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301153Estq3_mestradiol regulated response QTL 3 (mouse)Not determined119689769399327028Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse

Markers in Region
RH124358  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381198,806,134 - 98,806,229UniSTSGRCm38
MGSCv371198,667,448 - 98,667,543UniSTSGRCm37
Celera11108,460,901 - 108,460,996UniSTS
Cytogenetic Map11DUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001361931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_388540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK012753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL590963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM946681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ176491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ387855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000037915   ⟹   ENSMUSP00000042792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1198,686,342 - 98,698,685 (+)Ensembl
GRCm38.p6 Ensembl1198,795,516 - 98,807,859 (+)Ensembl
RefSeq Acc Id: ENSMUST00000037930   ⟹   ENSMUSP00000043328
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1198,689,480 - 98,696,433 (+)Ensembl
GRCm38.p6 Ensembl1198,798,654 - 98,805,607 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107485   ⟹   ENSMUSP00000103109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1198,686,617 - 98,691,878 (+)Ensembl
GRCm38.p6 Ensembl1198,795,791 - 98,801,052 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107487   ⟹   ENSMUSP00000103111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1198,686,626 - 98,697,260 (+)Ensembl
GRCm38.p6 Ensembl1198,795,800 - 98,806,434 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126969   ⟹   ENSMUSP00000116598
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1198,690,991 - 98,694,945 (+)Ensembl
GRCm38.p6 Ensembl1198,800,165 - 98,804,119 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1198,695,097 - 98,696,605 (+)Ensembl
GRCm38.p6 Ensembl1198,804,271 - 98,805,779 (+)Ensembl
RefSeq Acc Id: NM_001361931   ⟹   NP_001348860
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391198,686,342 - 98,698,685 (+)NCBI
GRCm381198,795,516 - 98,807,859 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361932   ⟹   NP_001348861
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391198,686,342 - 98,691,864 (+)NCBI
GRCm381198,795,516 - 98,801,038 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361933   ⟹   NP_001348862
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391198,689,480 - 98,698,685 (+)NCBI
GRCm381198,798,654 - 98,807,859 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361934   ⟹   NP_001348863
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391198,689,480 - 98,691,864 (+)NCBI
GRCm381198,798,654 - 98,801,038 (+)NCBI
Sequence:
RefSeq Acc Id: NM_028722   ⟹   NP_082998
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391198,686,342 - 98,698,685 (+)NCBI
GRCm381198,795,516 - 98,807,859 (+)NCBI
MGSCv371198,657,083 - 98,669,173 (+)RGD
Celera11108,450,534 - 108,462,629 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_388540
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391198,684,214 - 98,696,442 (+)NCBI
GRCm381198,793,508 - 98,804,920 (+)NCBI
Sequence:
RefSeq Acc Id: NP_082998   ⟸   NM_028722
- Peptide Label: isoform 1
- UniProtKB: Q9CXF9 (UniProtKB/Swiss-Prot),   Q8BPN3 (UniProtKB/Swiss-Prot),   Q80XS0 (UniProtKB/Swiss-Prot),   Q3TTE5 (UniProtKB/Swiss-Prot),   Q27QB3 (UniProtKB/Swiss-Prot),   A3KFP4 (UniProtKB/Swiss-Prot),   A3KFP2 (UniProtKB/Swiss-Prot),   Q9D5C9 (UniProtKB/Swiss-Prot),   Q6PDM1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001348860   ⟸   NM_001361931
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001348861   ⟸   NM_001361932
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001348862   ⟸   NM_001361933
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001348863   ⟸   NM_001361934
- Peptide Label: isoform 5
RefSeq Acc Id: ENSMUSP00000103109   ⟸   ENSMUST00000107485
RefSeq Acc Id: ENSMUSP00000103111   ⟸   ENSMUST00000107487
RefSeq Acc Id: ENSMUSP00000116598   ⟸   ENSMUST00000126969
RefSeq Acc Id: ENSMUSP00000043328   ⟸   ENSMUST00000037930
RefSeq Acc Id: ENSMUSP00000042792   ⟸   ENSMUST00000037915
Protein Domains
PEHE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PDM1-F1-model_v2 AlphaFold Q6PDM1 1-616 view protein structure

Promoters
RGD ID:6820180
Promoter ID:MM_KWN:9610
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000037915,   OTTMUST00000014590,   UC007LHI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361198,656,036 - 98,657,902 (+)MPROMDB
RGD ID:6820179
Promoter ID:MM_KWN:9611
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   MEF_B6
Transcripts:OTTMUST00000014591,   UC007LHM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361198,659,071 - 98,660,387 (+)MPROMDB
RGD ID:6820538
Promoter ID:MM_KWN:9613
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000014680,   OTTMUST00000014756
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361198,665,101 - 98,665,601 (+)MPROMDB
RGD ID:8676522
Promoter ID:EPDNEW_M16291
Type:initiation region
Name:Msl1_1
Description:Mus musculus male specific lethal 1 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381198,795,829 - 98,795,889EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921276 AgrOrtholog
Ensembl Genes ENSMUSG00000052915 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000037915 ENTREZGENE
  ENSMUST00000037915.9 UniProtKB/Swiss-Prot
  ENSMUST00000037930 ENTREZGENE
  ENSMUST00000037930.13 UniProtKB/Swiss-Prot
  ENSMUST00000107485 ENTREZGENE
  ENSMUST00000107485.8 UniProtKB/Swiss-Prot
  ENSMUST00000107487 ENTREZGENE
  ENSMUST00000107487.10 UniProtKB/Swiss-Prot
  ENSMUST00000126969.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot
  6.10.250.2000 UniProtKB/Swiss-Prot
  6.10.250.3170 UniProtKB/TrEMBL
InterPro Msl-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MSL1_dimer UniProtKB/Swiss-Prot
  PEHE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74026 UniProtKB/Swiss-Prot
MGD MGI:1921276 ENTREZGENE
NCBI Gene 74026 ENTREZGENE
PANTHER MALE-SPECIFIC LETHAL 1 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21656 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MSL1_dimer UniProtKB/Swiss-Prot
  PEHE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Msl1 PhenoGen
SMART PEHE UniProtKB/Swiss-Prot
UniProt A3KFP2 ENTREZGENE
  A3KFP4 ENTREZGENE
  F7CR37_MOUSE UniProtKB/TrEMBL
  MSL1_MOUSE UniProtKB/Swiss-Prot
  Q27QB3 ENTREZGENE
  Q3TTE5 ENTREZGENE
  Q6PDM1 ENTREZGENE
  Q80XS0 ENTREZGENE
  Q8BPN3 ENTREZGENE
  Q9CXF9 ENTREZGENE
  Q9D5C9 ENTREZGENE
UniProt Secondary A3KFP2 UniProtKB/Swiss-Prot
  A3KFP4 UniProtKB/Swiss-Prot
  Q27QB3 UniProtKB/Swiss-Prot
  Q3TTE5 UniProtKB/Swiss-Prot
  Q80XS0 UniProtKB/Swiss-Prot
  Q8BPN3 UniProtKB/Swiss-Prot
  Q9CXF9 UniProtKB/Swiss-Prot
  Q9D5C9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-31 Msl1  male specific lethal 1    male-specific lethal 1 homolog (Drosophila)  Symbol and/or name change 5135510 APPROVED