Or8g53 (olfactory receptor family 8 subfamily G member 53) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Or8g53 (olfactory receptor family 8 subfamily G member 53) Mus musculus
Analyze
No known orthologs.
Symbol: Or8g53
Name: olfactory receptor family 8 subfamily G member 53
RGD ID: 1614118
MGI Page MGI
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GA_x6K02T2PVTD-33470347-33469403; MOR171-; MOR171-15; olfactory receptor 968; olfactory receptor MOR171-15; Olfr968
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39939,683,068 - 39,684,094 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl939,680,072 - 39,694,549 (-)EnsemblGRCm39 Ensembl
GRCm38939,771,772 - 39,772,798 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl939,768,776 - 39,783,253 (-)EnsemblGRCm38mm10GRCm38
MGSCv37939,579,357 - 39,580,383 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36939,522,425 - 39,523,369 (-)NCBIMGSCv36mm8
Celera937,010,203 - 37,011,229 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map921.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (ISA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:14611657   PMID:21873635   PMID:32295537  


Genomics

Variants

.
Variants in Or8g53
29 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:97
Interacting mature miRNAs:98
Transcripts:ENSMUST00000075928
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
1301000Obq5_mobesity QTL 5 (mouse)Not determined92850333341799326Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1558949Igan3_mIgA nephropathy 3 (mouse)Not determined93041469440565914Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1357682Phdlc1_mplasma HDL cholesterol 1 (mouse)Not determined93410461942764866Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
10045613Rapop7_mradiation-induced apoptosis 6 (mouse)Not determined93673624349420511Mouse
1301501Lmr2_mleishmaniasis resistance 2 (mouse)Not determined93694340650111140Mouse
1301007Pid2_mprion incubation determinant 2 (mouse)Not determined93715336244251323Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse

Markers in Region
UniSTS:485127  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38939,873,277 - 39,874,221UniSTSGRCm38
GRCm38939,771,854 - 39,772,798UniSTSGRCm38
MGSCv37939,680,862 - 39,681,806UniSTSGRCm37
MGSCv37939,579,439 - 39,580,383UniSTSGRCm37
Celera937,113,685 - 37,114,629UniSTS
Celera937,010,285 - 37,011,229UniSTS
Cytogenetic Map9A5-BUniSTS
UniSTS:489392  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38939,771,854 - 39,772,798UniSTSGRCm38
GRCm38939,873,277 - 39,874,221UniSTSGRCm38
MGSCv37939,579,439 - 39,580,383UniSTSGRCm37
MGSCv37939,680,862 - 39,681,806UniSTSGRCm37
Celera937,113,685 - 37,114,629UniSTS
Celera937,010,285 - 37,011,229UniSTS
Cytogenetic Map9A5-BUniSTS
UniSTS:494328  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38939,771,786 - 39,772,842UniSTSGRCm38
MGSCv37939,579,371 - 39,580,427UniSTSGRCm37
Celera937,010,217 - 37,011,273UniSTS
Cytogenetic Map9A5-BUniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000075928   ⟹   ENSMUSP00000096472
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl939,683,068 - 39,684,094 (-)Ensembl
GRCm38.p6 Ensembl939,771,772 - 39,772,798 (-)Ensembl
RefSeq Acc Id: ENSMUST00000216458   ⟹   ENSMUSP00000148969
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl939,680,072 - 39,694,549 (-)Ensembl
GRCm38.p6 Ensembl939,768,776 - 39,783,253 (-)Ensembl
RefSeq Acc Id: NM_146612   ⟹   NP_666823
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39939,683,068 - 39,684,094 (-)NCBI
GRCm38939,771,772 - 39,772,798 (-)ENTREZGENE
MGSCv37939,579,357 - 39,580,383 (-)RGD
Celera937,010,203 - 37,011,229 (-)RGD
cM Map9 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_666823 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL61148 (Get FASTA)   NCBI Sequence Viewer  
  AAP71431 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000096472
  ENSMUSP00000096472.3
  ENSMUSP00000148969.2
Reference Protein Sequences
RefSeq Acc Id: NP_666823   ⟸   NM_146612
- UniProtKB: Q8VFN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000148969   ⟸   ENSMUST00000216458
RefSeq Acc Id: ENSMUSP00000096472   ⟸   ENSMUST00000075928
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VFN4-F1-model_v2 AlphaFold Q8VFN4 1-314 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3030802 AgrOrtholog
Ensembl Genes ENSMUSG00000095903 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000075928 ENTREZGENE
  ENSMUST00000075928.6 UniProtKB/TrEMBL
  ENSMUST00000216458.3 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:258605 UniProtKB/TrEMBL
MGD MGI:3030802 ENTREZGENE
NCBI Gene 258605 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or8g53 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt Q8VFN4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or8g53  olfactory receptor family 8 subfamily G member 53  Olfr968  olfactory receptor 968  Symbol and/or name change 5135510 APPROVED