Gene: C9orf85 (chromosome 9 open reading frame 85) Homo sapiens
Analyze
Symbol:
C9orf85
Name:
chromosome 9 open reading frame 85
RGD ID:
1605873
HGNC Page
HGNC:28784
Description:
INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-isobutyl-1-methyl-7H-xanthine; aflatoxin B1
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
hypothetical protein LOC138241; MGC61599; RP11-346E17.2; uncharacterized protein C9orf85
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Mus musculus (house mouse):
1110059E24Rik (RIKEN cDNA 1110059E24 gene)
HGNC
EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):
C1h9orf85 (similar to human chromosome 9 open reading frame 85)
HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Chinchilla lanigera (long-tailed chinchilla):
CUNH9orf85 (chromosome unknown C9orf85 homolog)
NCBI
Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):
C11H9orf85 (chromosome 11 C9orf85 homolog)
NCBI
Ortholog
Canis lupus familiaris (dog):
C1H9orf85 (chromosome 1 C9orf85 homolog)
HGNC
EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoMCL, Panther, Treefam
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
CUNH9orf85 (chromosome unknown C9orf85 homolog)
NCBI
Ortholog
Sus scrofa (pig):
C1H9orf85 (chromosome 1 C9orf85 homolog)
HGNC
Ensembl, NCBI, OrthoDB
Chlorocebus sabaeus (green monkey):
CUNH9orf85 (chromosome unknown C9orf85 homolog)
NCBI
Ortholog
Heterocephalus glaber (naked mole-rat):
CUNH9orf85 (chromosome unknown C9orf85 homolog)
NCBI
Ortholog
Other homologs 2
Rattus norvegicus (Norway rat):
C5h9orf85 (similar to human chromosome 9 open reading frame 85)
HGNC
Ensembl, HomoloGene
Mus musculus (house mouse):
Zfp11 (zinc finger protein 11)
HGNC
PhylomeDB
Mus musculus (house mouse):
Zfp72 (zinc finger protein 72)
HGNC
PhylomeDB
Mus musculus (house mouse):
Zfp58 (zinc finger protein 58)
HGNC
PhylomeDB
Mus musculus (house mouse):
Zfp85 (zinc finger protein 85)
HGNC
PhylomeDB
Alliance orthologs 3
Rattus norvegicus (Norway rat):
C1h9orf85 (similar to human chromosome 9 open reading frame 85)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
1110059E24Rik (RIKEN cDNA 1110059E24 gene)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
zgc:101016
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid|ZFIN)
Drosophila melanogaster (fruit fly):
CG8675
Alliance
DIOPT (Ensembl Compara|Hieranoid|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus laevis (African clawed frog):
c9orf85.L
Alliance
DIOPT (Xenbase)
Xenopus tropicalis (tropical clawed frog):
c9orf85
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB)
Xenopus laevis (African clawed frog):
c9orf85.S
Alliance
DIOPT (Xenbase)
Related Pseudogenes:
C9orf85P2
Allele / Splice:
See ClinVar data
Latest Assembly:
GRCh38 - Human Genome Assembly GRCh38
Position:
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 9 71,911,639 - 71,986,058 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 9 71,911,510 - 71,986,054 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 9 74,526,555 - 74,600,974 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 9 73,716,243 - 73,778,193 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 9 45,099,152 - 45,161,076 (+) NCBI Celera Cytogenetic Map 9 q21.13 NCBI HuRef 9 44,349,378 - 44,410,973 (+) NCBI HuRef CHM1_1 9 74,672,988 - 74,734,924 (+) NCBI CHM1_1 T2T-CHM13v2.0 9 84,061,989 - 84,136,715 (+) NCBI T2T-CHM13v2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Additional References at PubMed
Genomics
Comparative Map Data
C9orf85 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 9 71,911,639 - 71,986,058 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 9 71,911,510 - 71,986,054 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 9 74,526,555 - 74,600,974 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 9 73,716,243 - 73,778,193 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 9 45,099,152 - 45,161,076 (+) NCBI Celera Cytogenetic Map 9 q21.13 NCBI HuRef 9 44,349,378 - 44,410,973 (+) NCBI HuRef CHM1_1 9 74,672,988 - 74,734,924 (+) NCBI CHM1_1 T2T-CHM13v2.0 9 84,061,989 - 84,136,715 (+) NCBI T2T-CHM13v2.0
1110059E24Rik (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 19 21,574,677 - 21,630,155 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 19 21,558,566 - 21,630,340 (-) Ensembl GRCm39 Ensembl GRCm38 19 21,597,313 - 21,652,791 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 19 21,581,202 - 21,652,976 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 19 21,671,803 - 21,727,281 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 19 21,664,410 - 21,719,888 (-) NCBI MGSCv36 mm8 Celera 19 22,333,265 - 22,388,929 (-) NCBI Celera Cytogenetic Map 19 B NCBI cM Map 19 15.54 NCBI
C1h9orf85 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 1 228,562,621 - 228,624,472 (-) NCBI GRCr8 mRatBN7.2 1 219,136,085 - 219,197,723 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 1 219,138,201 - 219,198,435 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 1 227,592,713 - 227,652,015 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 1 234,522,821 - 234,582,134 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 1 227,340,856 - 227,400,157 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 1 239,207,869 - 239,265,997 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 239,207,869 - 239,265,997 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 1 246,496,970 - 246,553,306 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 1 224,820,924 - 224,887,275 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 1 224,984,946 - 225,051,298 (-) NCBI Celera 1 216,376,808 - 216,435,093 (-) NCBI Celera Cytogenetic Map 1 q51 NCBI
CUNH9orf85 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955434 1,208,242 - 1,261,794 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955434 1,208,236 - 1,261,788 (-) NCBI ChiLan1.0 ChiLan1.0
C11H9orf85 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 11 71,101,963 - 71,176,205 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 9 71,107,663 - 71,180,039 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 9 52,829,338 - 52,900,688 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 9 70,654,637 - 70,726,035 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 9 70,654,632 - 70,726,379 (+) Ensembl panpan1.1 panPan2
C1H9orf85 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 1 85,745,782 - 85,806,531 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 1 85,746,347 - 85,807,014 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 1 86,211,407 - 86,271,561 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 1 86,196,874 - 86,256,989 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 1 86,196,854 - 86,257,503 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 1 85,958,138 - 86,018,294 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 1 85,662,864 - 85,722,807 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 1 86,421,732 - 86,482,033 (-) NCBI UU_Cfam_GSD_1.0
CUNH9orf85 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404947 133,167,253 - 133,229,542 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936503 7,943,502 - 8,006,266 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936503 7,943,340 - 8,005,739 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
C1H9orf85 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 1 225,193,689 - 225,263,647 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 1 225,193,422 - 225,258,927 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 1 251,759,323 - 251,825,201 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
CUNH9orf85 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 12 82,985,379 - 83,053,037 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 12 82,985,584 - 83,053,743 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666038 71,405,343 - 71,476,226 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
CUNH9orf85 (Heterocephalus glaber - naked mole-rat)
miRNA Target Status
Predicted Target Of
Count of predictions: 2255 Count of miRNA genes: 901 Interacting mature miRNAs: 1052 Transcripts: ENST00000334731, ENST00000377027, ENST00000377031, ENST00000473252, ENST00000479413, ENST00000486911 Prediction methods: Microtar, Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction