Symbol: |
C1H9orf85 (Ensembl: C9orf85) |
Name: |
chromosome 1 C9orf85 homolog (Ensembl:chromosome 9 open reading frame 85) |
RGD ID: |
12263154 |
Description: |
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Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
chromosome 1 open reading frame, human C9orf85; uncharacterized protein C9orf85 homolog |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
CanFam3.1 - Dog CanFam3.1 Assembly |
Position: |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 1 | 85,745,782 - 85,806,531 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 1 | 85,746,347 - 85,807,014 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 1 | 86,211,407 - 86,271,561 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 1 | 86,196,874 - 86,256,989 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 1 | 86,196,854 - 86,257,503 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 1 | 85,958,138 - 86,018,294 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 1 | 85,662,864 - 85,722,807 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 1 | 86,421,732 - 86,482,033 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
C1H9orf85 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 1 | 85,745,782 - 85,806,531 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 1 | 85,746,347 - 85,807,014 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 1 | 86,211,407 - 86,271,561 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 1 | 86,196,874 - 86,256,989 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 1 | 86,196,854 - 86,257,503 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 1 | 85,958,138 - 86,018,294 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 1 | 85,662,864 - 85,722,807 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 1 | 86,421,732 - 86,482,033 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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C9orf85 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 9 | 71,911,639 - 71,986,058 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 9 | 71,911,510 - 71,986,054 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 9 | 74,526,555 - 74,600,974 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 9 | 73,716,243 - 73,778,193 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 9 | 45,099,152 - 45,161,076 (+) | NCBI | | Celera | | | Cytogenetic Map | 9 | q21.13 | NCBI | | | | | HuRef | 9 | 44,349,378 - 44,410,973 (+) | NCBI | | HuRef | | | CHM1_1 | 9 | 74,672,988 - 74,734,924 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 9 | 84,061,989 - 84,136,715 (+) | NCBI | | T2T-CHM13v2.0 | | |
|
1110059E24Rik (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 19 | 21,574,677 - 21,630,155 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 19 | 21,558,566 - 21,630,340 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 19 | 21,597,313 - 21,652,791 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 19 | 21,581,202 - 21,652,976 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 19 | 21,671,803 - 21,727,281 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 19 | 21,664,410 - 21,719,888 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 19 | 22,333,265 - 22,388,929 (-) | NCBI | | Celera | | | Cytogenetic Map | 19 | B | NCBI | | | | | cM Map | 19 | 15.54 | NCBI | | | | |
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C1h9orf85 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 1 | 228,562,621 - 228,624,472 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 1 | 219,136,085 - 219,197,723 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 1 | 219,138,201 - 219,198,435 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 1 | 227,592,713 - 227,652,015 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 1 | 234,522,821 - 234,582,134 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 1 | 227,340,856 - 227,400,157 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 1 | 239,207,869 - 239,265,997 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 1 | 239,207,869 - 239,265,997 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 1 | 246,496,970 - 246,553,306 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 1 | 224,820,924 - 224,887,275 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 1 | 224,984,946 - 225,051,298 (-) | NCBI | | | | | Celera | 1 | 216,376,808 - 216,435,093 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | q51 | NCBI | | | | |
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CUNH9orf85 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955434 | 1,208,242 - 1,261,794 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955434 | 1,208,236 - 1,261,788 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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C11H9orf85 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 11 | 71,101,963 - 71,176,205 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 9 | 71,107,663 - 71,180,039 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 9 | 52,829,338 - 52,900,688 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 9 | 70,654,637 - 70,726,035 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 9 | 70,654,632 - 70,726,379 (+) | Ensembl | panpan1.1 | | panPan2 | |
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CUNH9orf85 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024404947 | 133,167,253 - 133,229,542 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936503 | 7,943,502 - 8,006,266 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936503 | 7,943,340 - 8,005,739 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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C1H9orf85 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 1 | 225,193,689 - 225,263,647 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 1 | 225,193,422 - 225,258,927 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 1 | 251,759,323 - 251,825,201 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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CUNH9orf85 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 12 | 82,985,379 - 83,053,037 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 12 | 82,985,584 - 83,053,743 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666038 | 71,405,343 - 71,476,226 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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CUNH9orf85 (Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
reproductive system |
respiratory system |
adipose tissue |
High |
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|
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|
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|
|
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Medium |
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7
|
1
|
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1
|
1
|
|
6
|
|
1
|
2
|
Low |
5
|
5
|
15
|
5
|
6
|
5
|
5
|
6
|
6
|
8
|
9
|
4
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Below cutoff |
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|
|
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Sequence
RefSeq Acc Id: |
ENSCAFT00000002861 ⟹ ENSCAFP00000002653 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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CanFam3.1 Ensembl | 1 | 85,746,347 - 85,807,014 (-) | Ensembl |
|
RefSeq Acc Id: |
ENSCAFT00845000166 ⟹ ENSCAFP00845000128 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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ROS_Cfam_1.0 Ensembl | 1 | 86,196,854 - 86,257,503 (-) | Ensembl |
|
RefSeq Acc Id: |
XM_038466392 ⟹ XP_038322320 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
---|
UMICH_Zoey_3.1 | 1 | 85,958,138 - 86,018,294 (-) | NCBI |
|
RefSeq Acc Id: |
XM_038466393 ⟹ XP_038322321 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
---|
UMICH_Zoey_3.1 | 1 | 85,958,138 - 85,990,845 (-) | NCBI |
|
RefSeq Acc Id: |
XM_038527087 ⟹ XP_038383015 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UU_Cfam_GSD_1.0 | 1 | 86,421,732 - 86,482,033 (-) | NCBI |
|
RefSeq Acc Id: |
XM_038527088 ⟹ XP_038383016 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
---|
UU_Cfam_GSD_1.0 | 1 | 86,421,732 - 86,454,590 (-) | NCBI |
|
RefSeq Acc Id: |
XM_038585305 ⟹ XP_038441233 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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Dog10K_Boxer_Tasha | 1 | 86,211,407 - 86,244,115 (-) | NCBI |
|
RefSeq Acc Id: |
XM_038591391 ⟹ XP_038447319 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UNSW_CanFamBas_1.0 | 1 | 85,662,864 - 85,722,807 (-) | NCBI |
|
RefSeq Acc Id: |
XM_038591392 ⟹ XP_038447320 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UNSW_CanFamBas_1.0 | 1 | 85,662,864 - 85,695,380 (-) | NCBI |
|
RefSeq Acc Id: |
XM_038655203 ⟹ XP_038511131 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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ROS_Cfam_1.0 | 1 | 86,196,874 - 86,256,989 (-) | NCBI |
|
RefSeq Acc Id: |
XM_038655204 ⟹ XP_038511132 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
---|
ROS_Cfam_1.0 | 1 | 86,196,874 - 86,229,551 (-) | NCBI |
|
RefSeq Acc Id: |
XM_845851 ⟹ XP_850944 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
---|
CanFam3.1 | 1 | 85,745,782 - 85,806,531 (-) | NCBI | Dog10K_Boxer_Tasha | 1 | 86,211,407 - 86,271,561 (-) | NCBI |
|
Sequence: |
GGGCGGAAAGGCGGGAGAAGTTCCTTCCGGGTCAGTGGCCGAAGCGTGGACTGCGTGGGGGAGC CCCTGGCGTCTCGGTCTCCCCCGCGTCTTCCCTGTACCGACGCGAGGCGATCGTGGTTTCCACG ATGAGCTCCCAGAAAGGGAACGTGGTTCGTTCCAGGCCTCAGAGGCACCAGAATACGTTTAGCT TCAAAAATGACAAGTTTGATAAGAGTGTTCAGACCAAGAAAATTAATGCAAAGCTTCATGATGG AGTTTGTCAGCGCTGTAAAGAAGTTCTTGAATGGCGTGTAAAATACAGCAAATATAAACCATTG TCAAAGCCTAAAAAATGTGTTAAATGTTTACAAAAATCAGTAAAGGATTCTTATCACATAATAT GTAGACCATGTGCCTGTGAACTTGAAGTTTGTGCAAAATGTGGAAAGAAAGAAGACATTGTTGT TCCGTTTAATAAGGAACCAGAAAAGACAGAAAATCCTGAAATTAATCTACATTCCAACCATAGA AGTTGTAGAAGAAATGAAGAAAGTGATGATGACTTAGATTTTGATATTGATTTAGATGACCCAA AAGATAATCAAGTAGATTAATATTTTAAAAGTCAGTTTGAAAACATGAAATTCTGAAGAACTTC TGGCTTTTGAGAGTTTTACACAAAAATACTGTGAAATCCTAGTGAGATAAATAGCAAAAACCTA TGGAAAACAAGCAAAATTCATACATGGACAATTTAAATTATGCATGATACTTGGATAATTAAAT ACTTTCATCCAAAGTTAATTATAATAAATTTTAAGTAGCAGATACTGGATTATCTGCCAAAATG AGTATCAAGATATCATATTGTGGGCAGCCCTGGTGGCTCAGTGGTTTGGTGCCGCCTTCAGCCC AGGGCCTGATCCTGGAGACCCGGGATCAAGTCCCATGTCGGGCTCCCTGTGTGGAGCCTGCTTC TCCCTCTGCCTGTGTCTCTGCCTCACTCTTTCTCTCTCTCTCTCTCTTATGAGTGAATAAATAA AATTTTAAAAAAATATATCATATTGCATATGGGAATTATTTAGAAGAGTATATTATCTGATACC AAACTAAACAAGATTCAGAATTGTTAGTTGTTACAATACTATAATACTATCTCATTAATACTAT CTCAATAATATAATACTATCTCATGGAAAAATCAGATTATATTACTAGTGCTAGCCTCAAAAAT TCATCCTCATTAAATATCTTTTCATAGATTGACCTCAAATAAATGGTCCACATAACAAAGCCCA CTTACTTATAAGTTTACTTGTTATAAAAATCTCATTTTTTTTTAATAATAATGTTTAACAAGTG TATACAGCTTTTCTTTCAAAGTATTTTTACAGGGACACCTGGGTGGCTCAGCGGTTTGGCATCT GCCTTAAGCC
hide sequence
|
RefSeq Acc Id: |
XP_850944 ⟸ XM_845851 |
- Peptide Label: |
isoform X1 |
- UniProtKB: |
A0A8I3M9V1 (UniProtKB/TrEMBL), A0A8P0S806 (UniProtKB/TrEMBL) |
- Sequence: |
MSSQKGNVVRSRPQRHQNTFSFKNDKFDKSVQTKKINAKLHDGVCQRCKEVLEWRVKYSKYKPL SKPKKCVKCLQKSVKDSYHIICRPCACELEVCAKCGKKEDIVVPFNKEPEKTENPEINLHSNHR SCRRNEESDDDLDFDIDLDDPKDNQVD
hide sequence
|
RefSeq Acc Id: |
ENSCAFP00000002653 ⟸ ENSCAFT00000002861 |
RefSeq Acc Id: |
XP_038322320 ⟸ XM_038466392 |
- Peptide Label: |
isoform X1 |
RefSeq Acc Id: |
XP_038322321 ⟸ XM_038466393 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
XP_038447319 ⟸ XM_038591391 |
- Peptide Label: |
isoform X1 |
RefSeq Acc Id: |
XP_038447320 ⟸ XM_038591392 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
XP_038511131 ⟸ XM_038655203 |
- Peptide Label: |
isoform X1 |
- UniProtKB: |
A0A8I3M9V1 (UniProtKB/TrEMBL), A0A8P0S806 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
XP_038511132 ⟸ XM_038655204 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
XP_038441233 ⟸ XM_038585305 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
XP_038383015 ⟸ XM_038527087 |
- Peptide Label: |
isoform X1 |
- UniProtKB: |
A0A8C0P5U5 (UniProtKB/TrEMBL), A0A8C0R801 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
XP_038383016 ⟸ XM_038527088 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
ENSCAFP00845000128 ⟸ ENSCAFT00845000166 |
Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2017-09-12 |
C1H9orf85 |
chromosome 1 C9orf85 homolog |
|
chromosome 1 open reading frame, human C9orf85 |
Symbol and/or name change |
5135510 |
APPROVED |
|
|