C1H9orf85 (chromosome 1 C9orf85 homolog) - Rat Genome Database

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Gene: C1H9orf85 (chromosome 1 C9orf85 homolog) Canis lupus familiaris
Analyze
Symbol: C1H9orf85 (Ensembl: C9orf85)
Name: chromosome 1 C9orf85 homolog (Ensembl:chromosome 9 open reading frame 85)
RGD ID: 12263154
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome 1 open reading frame, human C9orf85; uncharacterized protein C9orf85 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1185,745,782 - 85,806,531 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl185,746,347 - 85,807,014 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha186,211,407 - 86,271,561 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0186,196,874 - 86,256,989 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl186,196,854 - 86,257,503 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1185,958,138 - 86,018,294 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0185,662,864 - 85,722,807 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0186,421,732 - 86,482,033 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
C1H9orf85
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1185,745,782 - 85,806,531 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl185,746,347 - 85,807,014 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha186,211,407 - 86,271,561 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0186,196,874 - 86,256,989 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl186,196,854 - 86,257,503 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1185,958,138 - 86,018,294 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0185,662,864 - 85,722,807 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0186,421,732 - 86,482,033 (-)NCBIUU_Cfam_GSD_1.0
C9orf85
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38971,911,639 - 71,986,058 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl971,911,510 - 71,986,054 (+)EnsemblGRCh38hg38GRCh38
GRCh37974,526,555 - 74,600,974 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36973,716,243 - 73,778,193 (+)NCBINCBI36Build 36hg18NCBI36
Celera945,099,152 - 45,161,076 (+)NCBICelera
Cytogenetic Map9q21.13NCBI
HuRef944,349,378 - 44,410,973 (+)NCBIHuRef
CHM1_1974,672,988 - 74,734,924 (+)NCBICHM1_1
T2T-CHM13v2.0984,061,989 - 84,136,715 (+)NCBIT2T-CHM13v2.0
1110059E24Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391921,574,677 - 21,630,155 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1921,558,566 - 21,630,340 (-)EnsemblGRCm39 Ensembl
GRCm381921,597,313 - 21,652,791 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1921,581,202 - 21,652,976 (-)EnsemblGRCm38mm10GRCm38
MGSCv371921,671,803 - 21,727,281 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361921,664,410 - 21,719,888 (-)NCBIMGSCv36mm8
Celera1922,333,265 - 22,388,929 (-)NCBICelera
Cytogenetic Map19BNCBI
cM Map1915.54NCBI
C1h9orf85
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81228,562,621 - 228,624,472 (-)NCBIGRCr8
mRatBN7.21219,136,085 - 219,197,723 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1219,138,201 - 219,198,435 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1227,592,713 - 227,652,015 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,522,821 - 234,582,134 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,340,856 - 227,400,157 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01239,207,869 - 239,265,997 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1239,207,869 - 239,265,997 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01246,496,970 - 246,553,306 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41224,820,924 - 224,887,275 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11224,984,946 - 225,051,298 (-)NCBI
Celera1216,376,808 - 216,435,093 (-)NCBICelera
Cytogenetic Map1q51NCBI
CUNH9orf85
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554341,208,242 - 1,261,794 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554341,208,236 - 1,261,788 (-)NCBIChiLan1.0ChiLan1.0
C11H9orf85
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21171,101,963 - 71,176,205 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1971,107,663 - 71,180,039 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0952,829,338 - 52,900,688 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1970,654,637 - 70,726,035 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl970,654,632 - 70,726,379 (+)Ensemblpanpan1.1panPan2
CUNH9orf85
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947133,167,253 - 133,229,542 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365037,943,502 - 8,006,266 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365037,943,340 - 8,005,739 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1H9orf85
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1225,193,689 - 225,263,647 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11225,193,422 - 225,258,927 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21251,759,323 - 251,825,201 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH9orf85
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11282,985,379 - 83,053,037 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1282,985,584 - 83,053,743 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603871,405,343 - 71,476,226 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH9orf85
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247361,108,987 - 1,174,763 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C1H9orf85
853 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 7 1 1 1 6 1 2
Low 5 5 15 5 6 5 5 6 6 8 9 4
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000002861   ⟹   ENSCAFP00000002653
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl185,746,347 - 85,807,014 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845000166   ⟹   ENSCAFP00845000128
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl186,196,854 - 86,257,503 (-)Ensembl
RefSeq Acc Id: XM_038466392   ⟹   XP_038322320
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1185,958,138 - 86,018,294 (-)NCBI
RefSeq Acc Id: XM_038466393   ⟹   XP_038322321
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1185,958,138 - 85,990,845 (-)NCBI
RefSeq Acc Id: XM_038527087   ⟹   XP_038383015
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0186,421,732 - 86,482,033 (-)NCBI
RefSeq Acc Id: XM_038527088   ⟹   XP_038383016
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0186,421,732 - 86,454,590 (-)NCBI
RefSeq Acc Id: XM_038585305   ⟹   XP_038441233
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha186,211,407 - 86,244,115 (-)NCBI
RefSeq Acc Id: XM_038591391   ⟹   XP_038447319
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0185,662,864 - 85,722,807 (-)NCBI
RefSeq Acc Id: XM_038591392   ⟹   XP_038447320
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0185,662,864 - 85,695,380 (-)NCBI
RefSeq Acc Id: XM_038655203   ⟹   XP_038511131
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0186,196,874 - 86,256,989 (-)NCBI
RefSeq Acc Id: XM_038655204   ⟹   XP_038511132
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0186,196,874 - 86,229,551 (-)NCBI
RefSeq Acc Id: XM_845851   ⟹   XP_850944
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1185,745,782 - 85,806,531 (-)NCBI
Dog10K_Boxer_Tasha186,211,407 - 86,271,561 (-)NCBI
Sequence:
RefSeq Acc Id: XP_850944   ⟸   XM_845851
- Peptide Label: isoform X1
- UniProtKB: A0A8I3M9V1 (UniProtKB/TrEMBL),   A0A8P0S806 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000002653   ⟸   ENSCAFT00000002861
RefSeq Acc Id: XP_038322320   ⟸   XM_038466392
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038322321   ⟸   XM_038466393
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038447319   ⟸   XM_038591391
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038447320   ⟸   XM_038591392
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038511131   ⟸   XM_038655203
- Peptide Label: isoform X1
- UniProtKB: A0A8I3M9V1 (UniProtKB/TrEMBL),   A0A8P0S806 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038511132   ⟸   XM_038655204
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038441233   ⟸   XM_038585305
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038383015   ⟸   XM_038527087
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P5U5 (UniProtKB/TrEMBL),   A0A8C0R801 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038383016   ⟸   XM_038527088
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCAFP00845000128   ⟸   ENSCAFT00845000166


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001820 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030022508 UniProtKB/TrEMBL
  ENSCAFG00040000463 UniProtKB/TrEMBL
  ENSCAFG00845000099 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000002861.5 UniProtKB/TrEMBL
  ENSCAFT00030041350.1 UniProtKB/TrEMBL
  ENSCAFT00040000799.1 UniProtKB/TrEMBL
  ENSCAFT00845000166 ENTREZGENE
  ENSCAFT00845000166.1 UniProtKB/TrEMBL
InterPro DUF2039 UniProtKB/TrEMBL
NCBI Gene C1H9orf85 ENTREZGENE
PANTHER PTHR22876 UniProtKB/TrEMBL
  ZGC:101016 UniProtKB/TrEMBL
Pfam DUF2039 UniProtKB/TrEMBL
UniProt A0A8C0P5U5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R801 ENTREZGENE
  A0A8I3M9V1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0S806 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:52513 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-12 C1H9orf85  chromosome 1 C9orf85 homolog    chromosome 1 open reading frame, human C9orf85  Symbol and/or name change 5135510 APPROVED