C11H9orf85 (chromosome 11 C9orf85 homolog)

Gene: C11H9orf85 (chromosome 11 C9orf85 homolog) Pan paniscus

Analyze

Symbol:

C11H9orf85 (Ensembl: C9orf85)

Name:

chromosome 11 C9orf85 homolog (Ensembl:chromosome 9 C9orf85 homolog)

RGD ID:

11669080

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C9H9orf85; chromosome 9 C9orf85 homolog; chromosome 9 open reading frame, human C9orf85; uncharacterized protein C9orf85 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	71,101,963 - 71,176,205 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	71,107,663 - 71,180,039 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	52,829,338 - 52,900,688 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	70,654,637 - 70,726,035 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	70,654,632 - 70,726,379 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Comparative Map Data

C11H9orf85
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	71,101,963 - 71,176,205 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	71,107,663 - 71,180,039 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	52,829,338 - 52,900,688 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	70,654,637 - 70,726,035 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	70,654,632 - 70,726,379 (+)	Ensembl	panpan1.1		panPan2

C9orf85
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	71,911,639 - 71,986,058 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	71,911,510 - 71,986,054 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	74,526,555 - 74,600,974 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	73,716,243 - 73,778,193 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	45,099,152 - 45,161,076 (+)	NCBI		Celera
Cytogenetic Map	9	q21.13	NCBI
HuRef	9	44,349,378 - 44,410,973 (+)	NCBI		HuRef
CHM1_1	9	74,672,988 - 74,734,924 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	84,061,989 - 84,136,715 (+)	NCBI		T2T-CHM13v2.0

1110059E24Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	21,574,677 - 21,630,155 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	21,558,566 - 21,630,340 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	21,597,313 - 21,652,791 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	21,581,202 - 21,652,976 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	21,671,803 - 21,727,281 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	21,664,410 - 21,719,888 (-)	NCBI		MGSCv36	mm8
Celera	19	22,333,265 - 22,388,929 (-)	NCBI		Celera
Cytogenetic Map	19	B	NCBI
cM Map	19	15.54	NCBI

C1h9orf85
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	228,562,621 - 228,624,472 (-)	NCBI		GRCr8
mRatBN7.2	1	219,136,085 - 219,197,723 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	219,138,201 - 219,198,435 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	227,592,713 - 227,652,015 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	234,522,821 - 234,582,134 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	227,340,856 - 227,400,157 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	239,207,869 - 239,265,997 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	239,207,869 - 239,265,997 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	246,496,970 - 246,553,306 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	224,820,924 - 224,887,275 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	224,984,946 - 225,051,298 (-)	NCBI
Celera	1	216,376,808 - 216,435,093 (-)	NCBI		Celera
Cytogenetic Map	1	q51	NCBI

CUNH9orf85
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955434	1,208,242 - 1,261,794 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955434	1,208,236 - 1,261,788 (-)	NCBI	ChiLan1.0	ChiLan1.0

C1H9orf85
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	85,745,782 - 85,806,531 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	85,746,347 - 85,807,014 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	86,211,407 - 86,271,561 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	86,196,874 - 86,256,989 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	86,196,854 - 86,257,503 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	85,958,138 - 86,018,294 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	85,662,864 - 85,722,807 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	86,421,732 - 86,482,033 (-)	NCBI		UU_Cfam_GSD_1.0

CUNH9orf85
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	133,167,253 - 133,229,542 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936503	7,943,502 - 8,006,266 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936503	7,943,340 - 8,005,739 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C1H9orf85
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	225,193,689 - 225,263,647 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	225,193,422 - 225,258,927 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	251,759,323 - 251,825,201 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CUNH9orf85
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	82,985,379 - 83,053,037 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	82,985,584 - 83,053,743 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	71,405,343 - 71,476,226 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH9orf85
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624736	1,108,987 - 1,174,763 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003806370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034967566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034967567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055091897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055091899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063593979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063593980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063593981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004673331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004673332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010109052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010109053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_608686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_608688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000057096 ⟹ ENSPPAP00000034215

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	9	70,654,632 - 70,716,790 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000057101 ⟹ ENSPPAP00000034220

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	9	70,655,099 - 70,726,379 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000057104 ⟹ ENSPPAP00000034223

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	9	70,655,099 - 70,726,234 (+)	Ensembl

RefSeq Acc Id:

XM_003806370 ⟹ XP_003806418

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	71,101,963 - 71,167,525 (+)	NCBI
NHGRI_mPanPan1	9	71,107,663 - 71,173,459 (+)	NCBI
Mhudiblu_PPA_v0	9	52,838,085 - 52,900,688 (-)	NCBI
PanPan1.1	9	70,654,637 - 70,716,790 (+)	NCBI

Sequence:

show sequence

TTCCACCAATCACAGGCCGCCCGGCAGGGTGGGAGGCGCTCTGAGCTCCAGGAGAGGCTGAGCT
CGCTCAGCAGGAGGCGGGGATTGCGGAAAAGAAGAACCAATAGGAACAAAGGTTCCCCGCCCCT
TTGATTTGATGGACTACACATTCGGGCCAATGGGGGAATTCTCATTTCGAAGAAAGCGGGACTT
GTTCTCCGGGTTTGAGAAAGAGGCTGCGCGGAGCCGGAGGGGTGAGGCTGCGCCGCGTGGAGTG
GCTTGGCTTAACAGCAGGGAGGGCAGAGCGATGCTCTTTGACCTCCCAGAAGAGTCACGTGGGC
TGACCCAGAGCCGGGGCGGAAAGGCTGCGTTAGTTTCTTCCGGGTCATTGACAGAAGCGTCAAT
TCCTGGGAGTAGTTCGTTGGTTTTCTTTCCCCTCATCCTTTTGCCTGCTCCCGGCGAGGGGTGG
CTTTGATTTCGGCGATGAGCTCCCAGAAAGGCAACGTGGCTCGTTCCAGACCTCAGAAGCACCA
GAATACGTTTAGCTTCAAAAATGACAAGTTCGATAAAAGTGTGCAGACCAAGAAAATTAATGCA
AAACTTCATGATGGAGTATGTCAGCGCTGTAAAGAAGTTCTTGAGTGGCGTGTAAAATACAGCA
AATACAAACCATTATCAAAACCTAAAAAATGTGTCAAATGTTTACAAAAGACAGTGAAGGATTC
TTATCACATAATGTGTAGGCCATGTGCCTGTGAACTTGAAGTTTGCGCAAAATGTGGAAAGAAA
GAAGACATTGTTATTCCGTTGAATAAAGAAACAGAAAAAATAGAACATACTGAAAATAATCTAA
GTTCCAACCATAGAAGAAGCTGCAGAAGAAATGAAGAAAGTGATGATGATTTAGATTTTGATAT
TGATTTAGAAGACACAGGAGGAGACCATCAAATGAATTAATATCACTGTGTTAAAAGTCTGCCG
GGCACAGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCAAGGCGGGTGGATCACCTGAG
GTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCGAAACCCCATCTCCACTAAAAGTACAAAAA
ATTAGCTGGGCATGGTGGCTCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGGAT
TGCTTGAACCCTGGAGGCGGAGATTGAAGTGAGCTGAGTTCGTGCCATTACACTCCAGCCTGGG
TGACAGAGTGAGACTCTGTCTCAAAAAAAATAAAATAAAAAGTCAACTTAGAATGTGAAATTCT
GACCACCTTTTGGCTTTGAGTATTTTCCAAAAGATATTTGAAATCCTAATGAGGAAATCAGAAA
AAGGTATGAAAAAGACAAATTTCATACATGAACAATATAAATTGTGTATATTACTTAACATCAA
ACTAAACAAGATTCAGAATTGATGGTTGTATAAGAACTAGCTCATGTAAAAATAAAATAACATT
ATTACATTGCCTCAAAAATTGGTCCTCAGTAAGTGCCTTTTGATAAATGATCTCAAATAAATGA
CTCATAGCAAAA

hide sequence

RefSeq Acc Id:

XM_055091897 ⟹ XP_054947872

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	71,101,963 - 71,176,205 (+)	NCBI
NHGRI_mPanPan1	9	71,107,663 - 71,180,039 (+)	NCBI

RefSeq Acc Id:

XM_055091899 ⟹ XP_054947874

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	71,101,963 - 71,170,677 (+)	NCBI
NHGRI_mPanPan1	9	71,107,663 - 71,177,892 (+)	NCBI

RefSeq Acc Id:

XM_063593979 ⟹ XP_063450049

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	71,101,963 - 71,167,525 (+)	NCBI

RefSeq Acc Id:

XM_063593980 ⟹ XP_063450050

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	71,101,963 - 71,173,071 (+)	NCBI

RefSeq Acc Id:

XM_063593981 ⟹ XP_063450051

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	71,101,963 - 71,142,185 (+)	NCBI

RefSeq Acc Id:

XR_004673332

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	71,101,963 - 71,163,110 (+)	NCBI
NHGRI_mPanPan1	9	71,107,663 - 71,169,049 (+)	NCBI
Mhudiblu_PPA_v0	9	52,839,221 - 52,900,688 (-)	NCBI

RefSeq Acc Id:

XR_010109052

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	71,101,963 - 71,163,110 (+)	NCBI

RefSeq Acc Id:

XR_010109053

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	71,101,963 - 71,173,075 (+)	NCBI

RefSeq Acc Id:

XR_608686

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	71,101,963 - 71,167,525 (+)	NCBI
NHGRI_mPanPan1	9	71,107,663 - 71,173,459 (+)	NCBI
Mhudiblu_PPA_v0	9	52,834,811 - 52,900,688 (-)	NCBI
PanPan1.1	9	70,654,637 - 70,720,593 (+)	NCBI

Sequence:

show sequence

TTCCACCAATCACAGGCCGCCCGGCAGGGTGGGAGGCGCTCTGAGCTCCAGGAGAGGCTGAGCT
CGCTCAGCAGGAGGCGGGGATTGCGGAAAAGAAGAACCAATAGGAACAAAGGTTCCCCGCCCCT
TTGATTTGATGGACTACACATTCGGGCCAATGGGGGAATTCTCATTTCGAAGAAAGCGGGACTT
GTTCTCCGGGTTTGAGAAAGAGGCTGCGCGGAGCCGGAGGGGTGAGGCTGCGCCGCGTGGAGTG
GCTTGGCTTAACAGCAGGGAGGGCAGAGCGATGCTCTTTGACCTCCCAGAAGAGTCACGTGGGC
TGACCCAGAGCCGGGGCGGAAAGGCTGCGTTAGTTTCTTCCGGGTCATTGACAGAAGCGTCAAT
TCCTGGGAGTAGTTCGTTGGTTTTCTTTCCCCTCATCCTTTTGCCTGCTCCCGGCGAGGGGTGG
CTTTGATTTCGGCGATGAGCTCCCAGAAAGGCAACGTGGCTCGTTCCAGACCTCAGAAGCACCA
GAATACGTTTAGCTTCAAAAATGACAAGTTCGATAAAAGTGTGCAGACCAAGAAAATTAATGCA
AAACTTCATGATGGAGTATGTCAGCGCTGTAAAGAAGTTCTTGAGTGGCGTGTAAAATACAGCA
AATACAAACCATTATCAAAACCTAAAAAATGTGTCAAATGTTTACAAAAGACAGTGAAGGATTC
TTATCACATAATGTGTAGGCCATGTGCCTGTGAACTTGAAGTTTGCGCAAAATGTGGAAAGAAA
GAAGACATTGTTATTCCGTTGAATAAAGAAACAGAAAAAATAGAACATACTGAAAATAATCTAA
GTTCCAACCATAGAAGAAGCTGCAGAAGAAATGAAGAAAGTGATGATGATTTAGATTTTGATAT
TGATTTAGAAGACACAGGAGGAGACCATCAAATGAATTAATATCACTGTGTTAAAAGTCTGCCG
GGCACAGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCAAGGCGGGTGGATCACCTGAG
GTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCGAAACCCCATCTCCACTAAAAGTACAAAAA
ATTAGCTGGGCATGGTGGCTCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGGAT
TGCTTGAACCCTGGAGGCGGAGATTGAAGTGAGCTGAGTTCGTGCCATTACACTCCAGCCTGGG
TGACAGAGTGAGACTCTGTCTCAAAAAAAATAAAATAAAAAGTCAACTTAGAATGTGAAATTCT
GACCACCTTTTGGCTTTGAGTATTTTCCAAAAGATATTTGAAATCCTAATGAGGAAATCAGAAA
AAGCCTCTCTTGCAACTAGGAGTATCCAGCATATGAGGGGAATCTGCTGAGACAATCTGGAAAA
GACTTACCTCACTGACAAGAAGAAAGCACTTTTCTAACAGGCTGTTTCTACCTGAATATGATTG
TGAGGAAACATGATGTCTAGAGCTTGCAGCCATGATAGGGATACCAAACGAGCTGCAGAGACAG
TGATCCAGAGCCCTGACATTGTGAAGCTGCTGAACTAACGAGCCCTGGGCTCACCCACCTCTAG
AATTCTTGTAAGATAATTACATGTCCGGAGCTTTTTCAAGCACCCGTATCTGTAAAAAAAAAGT
TTTTAAATAAAGTTTTGTT

hide sequence

RefSeq Acc Id:

XR_608688

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	71,101,963 - 71,173,072 (+)	NCBI
NHGRI_mPanPan1	9	71,107,663 - 71,179,011 (+)	NCBI
Mhudiblu_PPA_v0	9	52,829,338 - 52,900,688 (-)	NCBI
PanPan1.1	9	70,654,637 - 70,726,035 (+)	NCBI

Sequence:

show sequence

TTCCACCAATCACAGGCCGCCCGGCAGGGTGGGAGGCGCTCTGAGCTCCAGGAGAGGCTGAGCT
CGCTCAGCAGGAGGCGGGGATTGCGGAAAAGAAGAACCAATAGGAACAAAGGTTCCCCGCCCCT
TTGATTTGATGGACTACACATTCGGGCCAATGGGGGAATTCTCATTTCGAAGAAAGCGGGACTT
GTTCTCCGGGTTTGAGAAAGAGGCTGCGCGGAGCCGGAGGGGTGAGGCTGCGCCGCGTGGAGTG
GCTTGGCTTAACAGCAGGGAGGGCAGAGCGATGCTCTTTGACCTCCCAGAAGAGTCACGTGGGC
TGACCCAGAGCCGGGGCGGAAAGGCTGCGTTAGTTTCTTCCGGGTCATTGACAGAAGCGTCAAT
TCCTGGGAGTAGTTCGTTGGTTTTCTTTCCCCTCATCCTTTTGCCTGCTCCCGGCGAGGGGTGG
CTTTGATTTCGGCGATGAGCTCCCAGAAAGGCAACGTGGCTCGTTCCAGACCTCAGAAGCACCA
GAATACGTTTAGCTTCAAAAATGACAAGTTCGATAAAAGTGTGCAGACCAAGAAAATTAATGCA
AAACTTCATGATGGAGTATGTCAGCGCTGTAAAGAAGTTCTTGAGTGGCGTGTAAAATACAGCA
AATACAAACCATTATCAAAACCTAAAAAATGTGTCAAATGTTTACAAAAGACAGTGAAGGATTC
TTATCACATAATGTGTAGGCCATGTGCCTGTGAACTTGAAGTTTGCGCAAAATGTGGAAAGAAA
GAAGACATTGTTATTCCGTTGAATAAAGAAACAGAAAAAATAGAACATACTGAAAATAATCTAA
GTTCCAACCATAGAAGAAGCTGCAGAAGAAATGAAGAAAGTGATGATGATTTAGATTTTGATAT
TGATTTAGAAGACACAGGAGGAGACCATCAAATGAATTAATATCACTGTGTTAAAAGTCTGCCG
GGCACAGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCAAGGCGGGTGGATCACCTGAG
GTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCGAAACCCCATCTCCACTAAAAGTACAAAAA
ATTAGCTGGGCATGGTGGCTCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGGAT
TGCTTGAACCCTGGAGGCGGAGATTGAAGTGAGCTGAGTTCGTGCCATTACACTCCAGCCTGGG
TGACAGAGTGAGACTCTGTCTCAAAAAAAATAAAATAAAAAGTCAACTTAGAATGTGAAATTCT
GACCACCTTTTGGCTTTGAGTATTTTCCAAAAGATATTTGAAATCCTAATGAGGAAATCAGAAA
AAGATGGAGTCTCCCTCTGTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_003806418	(Get FASTA)	NCBI Sequence Viewer
	XP_054947872	(Get FASTA)	NCBI Sequence Viewer
	XP_054947874	(Get FASTA)	NCBI Sequence Viewer
	XP_063450049	(Get FASTA)	NCBI Sequence Viewer
	XP_063450050	(Get FASTA)	NCBI Sequence Viewer
	XP_063450051	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000034215.1
	ENSPPAP00000034220.1
	ENSPPAP00000034223.1

RefSeq Acc Id:	XP_003806418 ⟸ XM_003806370
- Peptide Label:	isoform X2
- Sequence:	show sequence MSSQKGNVARSRPQKHQNTFSFKNDKFDKSVQTKKINAKLHDGVCQRCKEVLEWRVKYSKYKPL SKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEDIVIPLNKETEKIEHTENNLSSNHR RSCRRNEESDDDLDFDIDLEDTGGDHQMN hide sequence

RefSeq Acc Id:

ENSPPAP00000034215 ⟸ ENSPPAT00000057096

RefSeq Acc Id:

ENSPPAP00000034220 ⟸ ENSPPAT00000057101

RefSeq Acc Id:

ENSPPAP00000034223 ⟸ ENSPPAT00000057104

RefSeq Acc Id:	XP_054947872 ⟸ XM_055091897
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9BX11 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054947874 ⟸ XM_055091899
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063450050 ⟸ XM_063593980
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9C0E8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063450049 ⟸ XM_063593979
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063450051 ⟸ XM_063593981
- Peptide Label:	isoform X5
- UniProtKB:	A0A2R9C0E8 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000039954	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000057096.1	UniProtKB/TrEMBL
	ENSPPAT00000057101.1	UniProtKB/TrEMBL
	ENSPPAT00000057104.1	UniProtKB/TrEMBL
InterPro	DUF2039	UniProtKB/TrEMBL
KEGG Report	pps:100993392	UniProtKB/TrEMBL
NCBI Gene	C9H9orf85	ENTREZGENE
PANTHER	PTHR22876	UniProtKB/TrEMBL
	ZGC:101016	UniProtKB/TrEMBL
Pfam	DUF2039	UniProtKB/TrEMBL
PRINTS	F138DOMAIN	UniProtKB/TrEMBL
UniProt	A0A2R9BX11	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9C0E2_PANPA	UniProtKB/TrEMBL
	A0A2R9C0E8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-03-13	C11H9orf85	chromosome 11 C9orf85 homolog	C9H9orf85	chromosome 9 C9orf85 homolog	Symbol and/or name change	5135510	APPROVED
2018-05-08	C9H9orf85	chromosome 9 C9orf85 homolog		chromosome 9 open reading frame, human C9orf85	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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