Coro2b (coronin, actin binding protein, 2B) - Rat Genome Database

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Gene: Coro2b (coronin, actin binding protein, 2B) Mus musculus
Analyze
Symbol: Coro2b
Name: coronin, actin binding protein, 2B
RGD ID: 1558236
MGI Page MGI
Description: Predicted to enable actin filament binding activity; talin binding activity; and vinculin binding activity. Acts upstream of or within focal adhesion assembly; negative regulation of stress fiber assembly; and regulation of glomerular filtration. Located in focal adhesion. Is expressed in cerebral cortex; dorsal root ganglion; and hippocampus. Orthologous to human CORO2B (coronin 2B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CLIPINC; coronin-2B; E130012P22; E130012P22Rik; KIAA0925-like
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39962,326,770 - 62,444,326 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl962,326,774 - 62,444,326 (-)EnsemblGRCm39 Ensembl
GRCm38962,419,490 - 62,537,044 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl962,419,492 - 62,537,044 (-)EnsemblGRCm38mm10GRCm38
MGSCv37962,267,299 - 62,384,851 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36962,217,503 - 62,335,050 (-)NCBIMGSCv36mm8
Celera959,643,037 - 59,752,273 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map933.71NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytoskeleton  (IEA)
focal adhesion  (IDA,ISO)
stress fiber  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808  
PMID:18799693   PMID:21677750   PMID:21873635   PMID:23332760   PMID:24270184   PMID:24569637   PMID:29162887   PMID:29518331   PMID:30562941   PMID:30735494   PMID:31221975   PMID:32325033  
PMID:32692409   PMID:36293380   PMID:36639906  


Genomics

Comparative Map Data
Coro2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39962,326,770 - 62,444,326 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl962,326,774 - 62,444,326 (-)EnsemblGRCm39 Ensembl
GRCm38962,419,490 - 62,537,044 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl962,419,492 - 62,537,044 (-)EnsemblGRCm38mm10GRCm38
MGSCv37962,267,299 - 62,384,851 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36962,217,503 - 62,335,050 (-)NCBIMGSCv36mm8
Celera959,643,037 - 59,752,273 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map933.71NCBI
CORO2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381568,518,373 - 68,727,806 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1568,578,993 - 68,727,806 (+)EnsemblGRCh38hg38GRCh38
GRCh371568,810,712 - 69,020,145 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361566,658,627 - 66,807,199 (+)NCBINCBI36Build 36hg18NCBI36
Build 341566,658,645 - 66,807,193NCBI
Celera1545,798,327 - 45,909,300 (+)NCBICelera
Cytogenetic Map15q23NCBI
HuRef1545,705,372 - 45,853,698 (+)NCBIHuRef
CHM1_11568,989,282 - 69,138,119 (+)NCBICHM1_1
T2T-CHM13v2.01566,341,263 - 66,550,386 (+)NCBIT2T-CHM13v2.0
Coro2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8871,802,329 - 71,912,739 (-)NCBIGRCr8
mRatBN7.2862,906,861 - 63,017,295 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl862,906,867 - 63,017,302 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0867,374,617 - 67,492,490 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl867,376,294 - 67,492,037 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0867,107,332 - 67,223,553 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4866,573,135 - 66,651,600 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera862,323,812 - 62,434,442 (-)NCBICelera
Cytogenetic Map8q24NCBI
Coro2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554507,521,188 - 7,573,575 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554507,522,447 - 7,573,043 (-)NCBIChiLan1.0ChiLan1.0
CORO2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21657,780,429 - 57,989,761 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11562,014,725 - 62,163,270 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01547,536,641 - 47,685,357 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11566,370,760 - 66,452,545 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1566,370,374 - 66,452,545 (+)Ensemblpanpan1.1panPan2
CORO2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13032,574,068 - 32,701,494 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3032,627,373 - 32,702,757 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3032,502,452 - 32,635,221 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03032,765,185 - 32,898,489 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3032,765,171 - 32,899,752 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13032,691,878 - 32,824,917 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03032,755,902 - 32,889,573 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03033,000,020 - 33,133,491 (+)NCBIUU_Cfam_GSD_1.0
Coro2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640110,585,976 - 110,704,075 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647128,481,630 - 28,552,160 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647128,481,615 - 28,552,143 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CORO2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1166,465,953 - 166,608,363 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11166,465,870 - 166,608,840 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21184,299,326 - 184,442,301 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CORO2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12614,746,497 - 14,909,483 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2614,746,379 - 14,895,951 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048126,574,113 - 126,724,538 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Coro2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247814,507,601 - 4,601,359 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247814,507,916 - 4,617,274 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Coro2b
4087 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1828
Count of miRNA genes:778
Interacting mature miRNAs:984
Transcripts:ENSMUST00000048043, ENSMUST00000123379, ENSMUST00000131981, ENSMUST00000151604, ENSMUST00000164246, ENSMUST00000173171, ENSMUST00000174439
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
4141572Ntta3_mneurotensin transcript abundance 3 (mouse)Not determined4659767165831177Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse
1301051Eae9_msusceptibility to experimental allergic encephalomyelitis 9 (mouse)Not determined94942029863239852Mouse
1301049El4_mepilepsy 4 (mouse)Not determined94942029867151448Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
13525008Hrtiq1_mheart rate time index, QTL 1 (mouse)95242609868556008Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
1301287Feml2_mfemur length in high growth mice 2 (mouse)Not determined95750728363207282Mouse
1301965Vmbic5_mventral midbrain iron content 5 (mouse)Not determined95759149265831177Mouse
1301549Bbaa9_mB.burgdorferi-associated arthritis 9 (mouse)Not determined95780504771481754Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95780504786121973Mouse
13525007Lfhrvq1_mlow frequency time index heart rate varaiblity, QTL 1 (mouse)95878431868556008Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96214976796149881Mouse

Markers in Region
UniSTS:236156  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38962,419,643 - 62,419,853UniSTSGRCm38
MGSCv37962,267,450 - 62,267,660UniSTSGRCm37
Celera959,643,188 - 59,643,396UniSTS
Cytogenetic Map9BUniSTS
D8Rat212  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38962,486,244 - 62,486,371UniSTSGRCm38
MGSCv37962,334,051 - 62,334,178UniSTSGRCm37
Celera959,700,236 - 59,700,343UniSTS
Cytogenetic Map9BUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_175484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB647296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000048043   ⟹   ENSMUSP00000041826
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl962,326,774 - 62,444,326 (-)Ensembl
GRCm38.p6 Ensembl962,419,492 - 62,537,044 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123379
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl962,360,565 - 62,444,242 (-)Ensembl
GRCm38.p6 Ensembl962,453,283 - 62,536,960 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131981   ⟹   ENSMUSP00000133481
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl962,332,865 - 62,335,283 (-)Ensembl
GRCm38.p6 Ensembl962,425,583 - 62,428,001 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151604
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl962,335,545 - 62,336,532 (-)Ensembl
GRCm38.p6 Ensembl962,428,263 - 62,429,250 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164246   ⟹   ENSMUSP00000128441
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl962,335,218 - 62,417,780 (-)Ensembl
GRCm38.p6 Ensembl962,427,936 - 62,510,498 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173171   ⟹   ENSMUSP00000134709
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl962,339,776 - 62,427,718 (-)Ensembl
GRCm38.p6 Ensembl962,432,494 - 62,520,436 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174439   ⟹   ENSMUSP00000134079
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl962,336,616 - 62,356,430 (-)Ensembl
GRCm38.p6 Ensembl962,429,334 - 62,449,148 (-)Ensembl
RefSeq Acc Id: NM_175484   ⟹   NP_780693
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39962,326,774 - 62,444,326 (-)NCBI
GRCm38962,419,492 - 62,537,044 (-)NCBI
MGSCv37962,267,299 - 62,384,851 (-)RGD
Celera959,643,037 - 59,752,273 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511094   ⟹   XP_006511157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39962,326,770 - 62,443,362 (-)NCBI
GRCm38962,419,490 - 62,536,080 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511095   ⟹   XP_006511158
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39962,326,770 - 62,405,128 (-)NCBI
GRCm38962,419,492 - 62,497,846 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511097   ⟹   XP_006511160
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39962,326,770 - 62,417,919 (-)NCBI
GRCm38962,419,492 - 62,511,618 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511098   ⟹   XP_006511161
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39962,326,770 - 62,411,725 (-)NCBI
GRCm38962,419,492 - 62,504,443 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511099   ⟹   XP_006511162
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39962,326,770 - 62,427,567 (-)NCBI
GRCm38962,419,492 - 62,520,285 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511100   ⟹   XP_006511163
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39962,326,770 - 62,443,803 (-)NCBI
GRCm38962,419,492 - 62,536,440 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154902   ⟹   XP_036010795
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39962,326,770 - 62,428,775 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_780693   ⟸   NM_175484
- UniProtKB: Q6P5U9 (UniProtKB/Swiss-Prot),   Q8BH44 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511163   ⟸   XM_006511100
- Peptide Label: isoform X3
- UniProtKB: Q8BH44 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511157   ⟸   XM_006511094
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006511162   ⟸   XM_006511099
- Peptide Label: isoform X3
- UniProtKB: Q8BH44 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511160   ⟸   XM_006511097
- Peptide Label: isoform X3
- UniProtKB: Q8BH44 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511161   ⟸   XM_006511098
- Peptide Label: isoform X3
- UniProtKB: Q8BH44 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511158   ⟸   XM_006511095
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000128441   ⟸   ENSMUST00000164246
RefSeq Acc Id: ENSMUSP00000041826   ⟸   ENSMUST00000048043
RefSeq Acc Id: ENSMUSP00000133481   ⟸   ENSMUST00000131981
RefSeq Acc Id: ENSMUSP00000134079   ⟸   ENSMUST00000174439
RefSeq Acc Id: ENSMUSP00000134709   ⟸   ENSMUST00000173171
RefSeq Acc Id: XP_036010795   ⟸   XM_036154902
- Peptide Label: isoform X3
Protein Domains
DUF1899

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BH44-F1-model_v2 AlphaFold Q8BH44 1-480 view protein structure

Promoters
RGD ID:6848492
Promoter ID:MM_ACW:50850
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   Brain,   ES_Cell,   Lung
Transcripts:CORO2B.FSEP07-UNSPLICED,   RETINO.ASEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36962,267,546 - 62,269,242 (-)MPROMDB
RGD ID:6844352
Promoter ID:MM_KWN:57684
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:OTTMUST00000057871
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36962,275,859 - 62,276,359 (-)MPROMDB
RGD ID:6844350
Promoter ID:MM_KWN:57685
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000057870
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36962,276,591 - 62,277,091 (-)MPROMDB
RGD ID:6844351
Promoter ID:MM_KWN:57687
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_175484,   UC009QAK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36962,384,586 - 62,385,086 (-)MPROMDB
RGD ID:8669900
Promoter ID:EPDNEW_M12980
Type:initiation region
Name:Coro2b_2
Description:Mus musculus coronin, actin binding protein, 2B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12981  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38962,536,779 - 62,536,839EPDNEW
RGD ID:8669902
Promoter ID:EPDNEW_M12981
Type:initiation region
Name:Coro2b_1
Description:Mus musculus coronin, actin binding protein, 2B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12980  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38962,537,044 - 62,537,104EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444283 AgrOrtholog
Ensembl Genes ENSMUSG00000041729 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000048043 ENTREZGENE
  ENSMUST00000048043.12 UniProtKB/Swiss-Prot
  ENSMUST00000131981.2 UniProtKB/TrEMBL
  ENSMUST00000164246.9 UniProtKB/TrEMBL
  ENSMUST00000173171.3 UniProtKB/TrEMBL
  ENSMUST00000174439.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Coronin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF1899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:235431 UniProtKB/Swiss-Prot
MGD MGI:2444283 ENTREZGENE
NCBI Gene 235431 ENTREZGENE
PANTHER PTHR10856 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10856:SF17 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Coro2b PhenoGen
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DUF1899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF1900 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt COR2B_MOUSE UniProtKB/Swiss-Prot
  G3UW48_MOUSE UniProtKB/TrEMBL
  G3UWZ2_MOUSE UniProtKB/TrEMBL
  G3UYG8_MOUSE UniProtKB/TrEMBL
  G3V005_MOUSE UniProtKB/TrEMBL
  Q6P5U9 ENTREZGENE
  Q8BH44 ENTREZGENE
UniProt Secondary Q6P5U9 UniProtKB/Swiss-Prot