Zswim2 (zinc finger SWIM-type containing 2) - Rat Genome Database

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Gene: Zswim2 (zinc finger SWIM-type containing 2) Mus musculus
Analyze
Symbol: Zswim2
Name: zinc finger SWIM-type containing 2
RGD ID: 1556990
MGI Page MGI
Description: Enables ubiquitin protein ligase activity. Involved in protein polyubiquitination. Acts upstream of or within positive regulation of extrinsic apoptotic signaling pathway via death domain receptors. Orthologous to human ZSWIM2 (zinc finger SWIM-type containing 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700025P14Rik; 4933437F18Rik; E3 ubiquitin-protein ligase Zswim2; MEKK1-related protein X; MEX; RING-type E3 ubiquitin transferase Zswim2; zinc finger SWIM domain-containing protein 2; zinc finger, SWIM domain containing 2; ZZ-type zinc finger-containing protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39283,745,414 - 83,771,596 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl283,745,423 - 83,771,572 (-)EnsemblGRCm39 Ensembl
GRCm38283,915,079 - 83,941,226 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl283,915,079 - 83,941,228 (-)EnsemblGRCm38mm10GRCm38
MGSCv37283,755,236 - 83,781,383 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36283,715,918 - 83,742,065 (-)NCBIMGSCv36mm8
Celera285,573,761 - 85,599,958 (-)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16522193   PMID:21267068   PMID:30783098   PMID:35831855  


Genomics

Comparative Map Data
Zswim2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39283,745,414 - 83,771,596 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl283,745,423 - 83,771,572 (-)EnsemblGRCm39 Ensembl
GRCm38283,915,079 - 83,941,226 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl283,915,079 - 83,941,228 (-)EnsemblGRCm38mm10GRCm38
MGSCv37283,755,236 - 83,781,383 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36283,715,918 - 83,742,065 (-)NCBIMGSCv36mm8
Celera285,573,761 - 85,599,958 (-)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.33NCBI
ZSWIM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382186,827,475 - 186,849,170 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2186,827,475 - 186,849,208 (-)EnsemblGRCh38hg38GRCh38
GRCh372187,692,202 - 187,713,897 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362187,400,452 - 187,422,142 (-)NCBINCBI36Build 36hg18NCBI36
Build 342187,518,067 - 187,539,403NCBI
Celera2181,287,838 - 181,310,094 (-)NCBICelera
Cytogenetic Map2q32.1NCBI
HuRef2179,552,221 - 179,573,906 (-)NCBIHuRef
CHM1_12187,698,209 - 187,719,897 (-)NCBICHM1_1
T2T-CHM13v2.02187,316,754 - 187,338,450 (-)NCBIT2T-CHM13v2.0
Zswim2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8389,401,887 - 89,422,308 (-)NCBIGRCr8
mRatBN7.2368,993,422 - 69,015,441 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl368,995,027 - 69,015,411 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx372,383,774 - 72,404,276 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0380,982,424 - 81,002,926 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0378,723,407 - 78,743,872 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0371,274,341 - 71,295,641 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl371,274,337 - 71,295,629 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0377,799,741 - 77,821,020 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4367,101,242 - 67,121,620 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1366,997,614 - 67,017,992 (-)NCBI
Celera368,365,685 - 68,386,070 (-)NCBICelera
Cytogenetic Map3q24NCBI
Zswim2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540311,479,808 - 11,495,577 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540311,478,682 - 11,494,725 (+)NCBIChiLan1.0ChiLan1.0
ZSWIM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21389,505,429 - 89,533,071 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B89,520,409 - 89,548,051 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B74,120,669 - 74,142,560 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B191,921,210 - 191,942,554 (-)NCBIpanpan1.1PanPan1.1panPan2
ZSWIM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13628,989,780 - 29,023,128 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3628,989,212 - 29,022,057 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3628,888,712 - 28,919,697 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03629,216,604 - 29,246,962 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3629,216,603 - 29,248,654 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13629,273,320 - 29,304,097 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03629,208,762 - 29,239,789 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03629,376,285 - 29,407,166 (-)NCBIUU_Cfam_GSD_1.0
Zswim2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303146,187,316 - 146,203,819 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650610,634,364 - 10,650,469 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650610,634,364 - 10,650,484 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSWIM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1591,840,944 - 91,864,332 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11591,840,694 - 91,865,227 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215101,850,741 - 101,872,225 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZSWIM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11072,368,406 - 72,391,943 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1072,368,927 - 72,390,417 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040127,111,072 - 127,133,399 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zswim2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248993,107,902 - 3,129,520 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248993,107,362 - 3,129,794 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zswim2
501 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:222
Count of miRNA genes:199
Interacting mature miRNAs:210
Transcripts:ENSMUST00000038223, ENSMUST00000152829, ENSMUST00000155127
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25244801986448136Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276678758103095823Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000038223   ⟹   ENSMUSP00000044913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl283,745,423 - 83,771,570 (-)Ensembl
GRCm38.p6 Ensembl283,915,079 - 83,941,226 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152829   ⟹   ENSMUSP00000119439
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl283,747,108 - 83,771,572 (-)Ensembl
GRCm38.p6 Ensembl283,916,764 - 83,941,228 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155127
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl283,753,268 - 83,754,023 (-)Ensembl
GRCm38.p6 Ensembl283,922,924 - 83,923,679 (-)Ensembl
RefSeq Acc Id: NM_001418736   ⟹   NP_001405665
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39283,752,982 - 83,771,572 (-)NCBI
RefSeq Acc Id: NM_027964   ⟹   NP_082240
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39283,745,414 - 83,771,572 (-)NCBI
GRCm38283,915,079 - 83,941,226 (-)NCBI
MGSCv37283,755,236 - 83,781,383 (-)RGD
Celera285,573,761 - 85,599,958 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036162577   ⟹   XP_036018470
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39283,746,260 - 83,771,596 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_082240   ⟸   NM_027964
- Peptide Label: isoform 1
- UniProtKB: Q9D9X6 (UniProtKB/Swiss-Prot),   Q0VB10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000119439   ⟸   ENSMUST00000152829
RefSeq Acc Id: ENSMUSP00000044913   ⟸   ENSMUST00000038223
RefSeq Acc Id: XP_036018470   ⟸   XM_036162577
- Peptide Label: isoform X1
- UniProtKB: B2FDH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001405665   ⟸   NM_001418736
- Peptide Label: isoform 2
Protein Domains
RING-type   SWIM-type   ZZ-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D9X6-F1-model_v2 AlphaFold Q9D9X6 1-631 view protein structure

Promoters
RGD ID:6877776
Promoter ID:EPDNEW_M2339
Type:multiple initiation site
Name:Zswim2_1
Description:Mus musculus zinc finger SWIM-type containing 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38283,941,208 - 83,941,268EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919111 AgrOrtholog
Ensembl Genes ENSMUSG00000034552 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038223 ENTREZGENE
  ENSMUST00000038223.8 UniProtKB/Swiss-Prot
  ENSMUST00000152829 ENTREZGENE
  ENSMUST00000152829.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.60.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_SWIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_ZZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_ZZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zswim2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71861 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1919111 ENTREZGENE
NCBI Gene 71861 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE ZSWIM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SWIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zswim2 PhenoGen
PROSITE ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_SWIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_ZZ_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_ZZ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_ZZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2FDH1 ENTREZGENE, UniProtKB/TrEMBL
  Q0VB10 ENTREZGENE, UniProtKB/TrEMBL
  Q9D9X6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-27 Zswim2  zinc finger SWIM-type containing 2    zinc finger, SWIM domain containing 2  Symbol and/or name change 5135510 APPROVED