Pomgnt1 (protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase) - Rat Genome Database

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Gene: Pomgnt1 (protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase) Mus musculus
Analyze
Symbol: Pomgnt1
Name: protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase
RGD ID: 1553166
MGI Page MGI
Description: Predicted to enable beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity and manganese ion binding activity. Acts upstream of or within several processes, including nervous system development; protein O-linked mannosylation; and reactive gliosis. Predicted to be located in Golgi membrane. Is expressed in several structures, including alimentary system; genitourinary system; liver; nervous system; and respiratory system. Used to study Walker-Warburg syndrome and muscular dystrophy-dystroglycanopathy type B1. Human ortholog(s) of this gene implicated in lissencephaly; muscular dystrophy (multiple); and retinitis pigmentosa. Orthologous to human POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0610016I07Rik; 4930467B06Rik; O-mannosyl N-acetylglucosaminyltransferase; protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase; protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1; RP23-319H15.3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394116,007,700 - 116,017,041 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4115,981,037 - 116,017,046 (+)EnsemblGRCm39 Ensembl
GRCm384116,150,498 - 116,159,844 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,123,840 - 116,159,849 (+)EnsemblGRCm38mm10GRCm38
MGSCv374115,823,123 - 115,832,449 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364115,648,457 - 115,657,776 (+)NCBIMGSCv36mm8
Celera4114,888,693 - 114,898,002 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Golgi apparatus  (IEA)
Golgi membrane  (IBA,ISO)
membrane  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal basement membrane morphology  (IAGP)
abnormal brain development  (IEA)
abnormal brain pia mater morphology  (IAGP)
abnormal Cajal-Retzius cell morphology  (IAGP)
abnormal cerebellar foliation  (IAGP)
abnormal cerebellar hemisphere morphology  (IAGP)
abnormal cerebellum external granule cell layer morphology  (IAGP)
abnormal cerebellum morphology  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal dentate gyrus morphology  (IAGP)
abnormal enzyme/coenzyme activity  (IAGP)
abnormal eye electrophysiology  (IAGP)
abnormal hippocampus morphology  (IAGP)
abnormal inferior colliculus morphology  (IAGP)
abnormal meninges morphology  (IAGP)
abnormal muscle physiology  (IAGP)
abnormal muscle regeneration  (IAGP)
abnormal neocortex morphology  (IAGP)
abnormal optic nerve morphology  (IAGP)
abnormal radial glial cell morphology  (IAGP)
abnormal retina blood vessel pattern  (IEA)
abnormal retina inner limiting membrane morphology  (IAGP)
abnormal retina layer morphology  (IAGP)
abnormal skeletal muscle fiber morphology  (IAGP)
abnormal skeletal muscle satellite cell proliferation  (IAGP)
abnormal stratification in cerebral cortex  (IAGP)
abnormal superior colliculus morphology  (IAGP)
abnormal tongue muscle morphology  (IAGP)
centrally nucleated skeletal muscle fibers  (IAGP)
decreased body size  (IAGP)
decreased circulating glucose level  (IEA)
decreased litter size  (IAGP)
decreased retina ganglion cell number  (IAGP)
decreased skeletal muscle fiber number  (IAGP)
decreased skeletal muscle fiber size  (IAGP)
dilated lateral ventricle  (IAGP)
dystrophic muscle  (IAGP)
hydrocephaly  (IAGP)
impaired basement membrane formation  (IAGP)
increased variability of skeletal muscle fiber size  (IAGP)
limb grasping  (IAGP)
male infertility  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IAGP)
reduced female fertility  (IAGP)
retina degeneration  (IEA)
retina microaneurysm  (IEA)
small cerebellum  (IAGP)
thin cerebral cortex  (IAGP)
thin retina inner nuclear layer  (IAGP)
thin retina outer nuclear layer  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. POMGnT1 mutations in congenital muscular dystrophy: genotype-phenotype correlation and expanded clinical spectrum. Biancheri R, etal., Arch Neurol. 2006 Oct;63(10):1491-5.
2. Molecular heterogeneity in fetal forms of type II lissencephaly. Bouchet C, etal., Hum Mutat. 2007 Oct;28(10):1020-7.
3. Novel POMGnT1 mutations cause muscle-eye-brain disease in Chinese patients. Jiao H, etal., Mol Genet Genomics. 2013 Aug;288(7-8):297-308. doi: 10.1007/s00438-013-0749-5. Epub 2013 May 21.
4. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
5. Breaches of the pial basement membrane are associated with defective dentate gyrus development in mouse models of congenital muscular dystrophies. Li J, etal., Neurosci Lett. 2011 Nov 7;505(1):19-24. doi: 10.1016/j.neulet.2011.09.040. Epub 2011 Sep 29.
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Novel POMGNT1 point mutations and intragenic rearrangements associated with muscle-eye-brain disease. Saredi S, etal., J Neurol Sci. 2012 Jul 15;318(1-2):45-50. doi: 10.1016/j.jns.2012.04.008. Epub 2012 May 2.
14. POMGnT1 gene alterations in a family with neurological abnormalities. Vervoort VS, etal., Ann Neurol. 2004 Jul;56(1):143-8.
15. Muscular dystrophy and neuronal migration disorder caused by mutations in a glycosyltransferase, POMGnT1. Yoshida A, etal., Dev Cell 2001 Nov;1(5):717-24.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12670716   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16458488   PMID:17034757   PMID:17967808   PMID:18295407   PMID:18490429   PMID:18799693   PMID:19017726   PMID:19114101   PMID:20562862   PMID:20680099   PMID:20816176  
PMID:21129441   PMID:21267068   PMID:21447391   PMID:21460210   PMID:21873635   PMID:22270369   PMID:22728091   PMID:23118208   PMID:23454088   PMID:24256719   PMID:24952961   PMID:25085363  
PMID:25737452   PMID:26306834   PMID:30550785   PMID:32290105   PMID:32325033   PMID:32453729   PMID:32554809   PMID:35320023  


Genomics

Comparative Map Data
Pomgnt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394116,007,700 - 116,017,041 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4115,981,037 - 116,017,046 (+)EnsemblGRCm39 Ensembl
GRCm384116,150,498 - 116,159,844 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,123,840 - 116,159,849 (+)EnsemblGRCm38mm10GRCm38
MGSCv374115,823,123 - 115,832,449 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364115,648,457 - 115,657,776 (+)NCBIMGSCv36mm8
Celera4114,888,693 - 114,898,002 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.1NCBI
POMGNT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38146,188,683 - 46,220,305 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl146,188,683 - 46,220,305 (-)EnsemblGRCh38hg38GRCh38
GRCh37146,654,355 - 46,685,977 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36146,426,940 - 46,436,708 (-)NCBINCBI36Build 36hg18NCBI36
Celera144,941,643 - 44,973,721 (-)NCBICelera
Cytogenetic Map1p34.1NCBI
HuRef144,769,330 - 44,801,277 (-)NCBIHuRef
CHM1_1146,771,477 - 46,803,118 (-)NCBICHM1_1
T2T-CHM13v2.0146,065,903 - 46,097,522 (-)NCBIT2T-CHM13v2.0
Pomgnt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85134,870,971 - 134,880,864 (+)NCBIGRCr8
mRatBN7.25129,634,274 - 129,644,150 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5129,634,294 - 129,644,149 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5132,250,551 - 132,260,368 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05134,005,138 - 134,014,956 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05134,027,575 - 134,037,392 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05135,007,343 - 135,017,220 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5135,007,343 - 135,017,218 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05138,791,235 - 138,801,112 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45136,429,379 - 136,439,254 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15136,434,604 - 136,444,480 (+)NCBI
Celera5128,162,654 - 128,172,461 (+)NCBICelera
Cytogenetic Map5q35NCBI
Pomgnt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546412,077,406 - 12,086,700 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546412,076,815 - 12,086,961 (+)NCBIChiLan1.0ChiLan1.0
POMGNT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21180,584,412 - 180,616,625 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11179,726,026 - 179,758,221 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,494,834 - 45,525,804 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1146,849,528 - 46,859,137 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl146,849,528 - 46,859,137 (-)Ensemblpanpan1.1panPan2
POMGNT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11514,176,932 - 14,187,181 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1514,178,357 - 14,187,161 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1514,299,079 - 14,309,089 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01514,329,378 - 14,339,540 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1514,329,801 - 14,339,540 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11514,130,602 - 14,140,611 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01514,199,089 - 14,209,095 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01514,268,643 - 14,278,728 (+)NCBIUU_Cfam_GSD_1.0
Pomgnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505861,404,486 - 61,417,843 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647427,229,113 - 27,239,123 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647427,229,262 - 27,239,034 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POMGNT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6165,212,833 - 165,222,409 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16165,212,828 - 165,222,412 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26152,692,300 - 152,701,877 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POMGNT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12086,588,049 - 86,597,576 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2086,588,550 - 86,599,107 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603330,389,152 - 30,398,705 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pomgnt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249062,119,684 - 2,135,656 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249062,120,759 - 2,131,024 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pomgnt1
293 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3932
Count of miRNA genes:748
Interacting mature miRNAs:963
Transcripts:ENSMUST00000106494, ENSMUST00000106496, ENSMUST00000106498, ENSMUST00000120083, ENSMUST00000121052, ENSMUST00000127426, ENSMUST00000133838, ENSMUST00000136855, ENSMUST00000144311, ENSMUST00000147612, ENSMUST00000151325, ENSMUST00000155718
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482244395116244582Mouse
1301867Idd11_minsulin dependent diabetes susceptibility 11 (mouse)Not determined483604870117605006Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488118237118557197Mouse
11532738Abd1_mautoimmune biliary disease 1 (mouse)488982069116271120Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined489969627123969747Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490590668124590781Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)490882780124882780Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4100857197124893793Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
1300689Dob1_mDietary obesity 1 (mouse)Body weight4101574601123127211Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109658132133154782Mouse
13208565Bmiq6_mbody mass index QTL 6 (mouse)4110857197125893793Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115030777129465915Mouse

Markers in Region
36.MMHAP9FRD12.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384116,141,892 - 116,142,057UniSTSGRCm38
MGSCv374115,814,497 - 115,814,662UniSTSGRCm37
Celera4114,880,040 - 114,880,205UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map4D1UniSTS
Whitehead_YAC4 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_029786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_376348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB053220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB053221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI848361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL611947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY732188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000106494   ⟹   ENSMUSP00000102103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,008,628 - 116,016,634 (+)Ensembl
GRCm38.p6 Ensembl4116,151,431 - 116,159,437 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106496   ⟹   ENSMUSP00000102105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,007,722 - 116,017,041 (+)Ensembl
GRCm38.p6 Ensembl4116,150,525 - 116,159,844 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106498   ⟹   ENSMUSP00000102107
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,007,715 - 116,017,041 (+)Ensembl
GRCm38.p6 Ensembl4116,150,518 - 116,159,844 (+)Ensembl
RefSeq Acc Id: ENSMUST00000120083   ⟹   ENSMUSP00000112751
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4115,994,434 - 116,017,045 (+)Ensembl
GRCm38.p6 Ensembl4116,137,237 - 116,159,848 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121052   ⟹   ENSMUSP00000112911
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4115,994,952 - 116,017,041 (+)Ensembl
GRCm38.p6 Ensembl4116,137,755 - 116,159,844 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127426
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,013,134 - 116,013,850 (+)Ensembl
GRCm38.p6 Ensembl4116,155,937 - 116,156,653 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133838
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,012,516 - 116,016,191 (+)Ensembl
GRCm38.p6 Ensembl4116,155,319 - 116,158,994 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136855
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4115,994,449 - 116,017,046 (+)Ensembl
GRCm38.p6 Ensembl4116,137,252 - 116,159,849 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4115,981,037 - 115,996,047 (+)Ensembl
GRCm38.p6 Ensembl4116,123,840 - 116,138,850 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147612
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,011,792 - 116,012,989 (+)Ensembl
GRCm38.p6 Ensembl4116,154,595 - 116,155,792 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151325
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,014,589 - 116,016,222 (+)Ensembl
GRCm38.p6 Ensembl4116,157,392 - 116,159,025 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155718
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,013,146 - 116,016,255 (+)Ensembl
GRCm38.p6 Ensembl4116,155,949 - 116,159,058 (+)Ensembl
RefSeq Acc Id: NM_001290658   ⟹   NP_001277587
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394116,008,628 - 116,017,041 (+)NCBI
GRCm384116,151,431 - 116,159,844 (+)NCBI
Celera4114,888,693 - 114,898,002 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026651   ⟹   NP_080927
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394116,007,715 - 116,017,041 (+)NCBI
GRCm384116,150,518 - 116,159,844 (+)NCBI
MGSCv374115,823,123 - 115,832,449 (+)RGD
Celera4114,888,693 - 114,898,002 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_029786   ⟹   NP_084062
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394116,007,715 - 116,017,041 (+)NCBI
GRCm384116,150,518 - 116,159,844 (+)NCBI
MGSCv374115,823,123 - 115,832,449 (+)RGD
Celera4114,888,693 - 114,898,002 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_004941951
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394116,007,700 - 116,017,041 (+)NCBI
Sequence:
RefSeq Acc Id: XR_376348
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394116,007,700 - 116,017,041 (+)NCBI
GRCm384116,150,498 - 116,159,844 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_084062   ⟸   NM_029786
- Peptide Label: isoform 2
- UniProtKB: Q91X88 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_080927   ⟸   NM_026651
- Peptide Label: isoform 1
- UniProtKB: Q9D5D3 (UniProtKB/Swiss-Prot),   Q9D2H7 (UniProtKB/Swiss-Prot),   A2A8F8 (UniProtKB/Swiss-Prot),   Q9DCN3 (UniProtKB/Swiss-Prot),   Q91X88 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001277587   ⟸   NM_001290658
- Peptide Label: isoform 3
- UniProtKB: Q91X88 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000102103   ⟸   ENSMUST00000106494
RefSeq Acc Id: ENSMUSP00000102105   ⟸   ENSMUST00000106496
RefSeq Acc Id: ENSMUSP00000102107   ⟸   ENSMUST00000106498
RefSeq Acc Id: ENSMUSP00000112911   ⟸   ENSMUST00000121052
RefSeq Acc Id: ENSMUSP00000112751   ⟸   ENSMUST00000120083
Protein Domains
GG-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91X88-F1-model_v2 AlphaFold Q91X88 1-660 view protein structure

Promoters
RGD ID:6835893
Promoter ID:MM_KWN:39134
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000079267,   ENSMUST00000079561,   NM_026651,   NM_029786,   OTTMUST00000021134
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364115,822,816 - 115,824,217 (+)MPROMDB
RGD ID:6835894
Promoter ID:MM_KWN:39137
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung,   Spleen
Transcripts:OTTMUST00000021136,   OTTMUST00000021137,   OTTMUST00000021138
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364115,827,646 - 115,828,617 (+)MPROMDB
RGD ID:6835896
Promoter ID:MM_KWN:39138
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000071172
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364115,830,276 - 115,830,776 (+)MPROMDB
RGD ID:6884290
Promoter ID:EPDNEW_M5596
Type:initiation region
Name:Pomgnt1_1
Description:Mus musculus protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase, transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5597  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384116,150,516 - 116,150,576EPDNEW
RGD ID:6884292
Promoter ID:EPDNEW_M5597
Type:initiation region
Name:Pomgnt1_2
Description:Mus musculus protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase, transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5596  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384116,151,461 - 116,151,521EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915523 AgrOrtholog
Ensembl Genes ENSMUSG00000028700 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000106494 ENTREZGENE
  ENSMUST00000106494.3 UniProtKB/Swiss-Prot
  ENSMUST00000106496 ENTREZGENE
  ENSMUST00000106496.8 UniProtKB/Swiss-Prot
  ENSMUST00000106498 ENTREZGENE
  ENSMUST00000106498.8 UniProtKB/Swiss-Prot
  ENSMUST00000120083.8 UniProtKB/Swiss-Prot
  ENSMUST00000121052.8 UniProtKB/Swiss-Prot
InterPro Glyco_trans_13 UniProtKB/Swiss-Prot
  ILEI/PANDER_dom UniProtKB/Swiss-Prot
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot
  POMGNT1_PANDER-like UniProtKB/Swiss-Prot
KEGG Report mmu:68273 UniProtKB/Swiss-Prot
MGD MGI:1915523 ENTREZGENE
NCBI Gene 68273 ENTREZGENE
PANTHER PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1 UniProtKB/Swiss-Prot
  PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1 UniProtKB/Swiss-Prot
Pfam GNT-I UniProtKB/Swiss-Prot
  ILEI UniProtKB/Swiss-Prot
PhenoGen Pomgnt1 PhenoGen
PROSITE GG_LECTIN UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot
UniProt A2A8F8 ENTREZGENE
  PMGT1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9D2H7 ENTREZGENE
  Q9D5D3 ENTREZGENE
  Q9DCN3 ENTREZGENE
UniProt Secondary A2A8F8 UniProtKB/Swiss-Prot
  Q9D2H7 UniProtKB/Swiss-Prot
  Q9D5D3 UniProtKB/Swiss-Prot
  Q9DCN3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-09-17 Pomgnt1  protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase    protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase  Symbol and/or name change 5135510 APPROVED